DN621009
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DN621009 vs. ExPASy Swiss-Prot
Match: YTDC1_RAT (YTH domain-containing protein 1 OS=Rattus norvegicus GN=Ythdc1 PE=1 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 5.620e-13 Identity = 50/153 (32.68%), Postives = 74/153 (48.37%), Query Frame = 2 Query: 284 D*KDMSSDTAKENASVVDSSVTEKHDVGNSDDPESSSYKANE------HRCPSLAKEAKAGHSNGQ----------LENSTDNNKGKLYNTRYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAFHNSGKVILIFSVNMSGFFXGYAQMMS 694 D + +SD+ E+ S D SV SD+ + +A R S A E+ AG ++ T K L + R+F+IKS NH+N+ L+ K +W+T +NE L AF ++ VILIFSV SG F G+A++ S Sbjct: 268 DTRSEASDSGSESVSFTDGSVRSGSGTDGSDEKKKERKRARGISPIVFDRSGSSASESYAGSEKKHEKLSSSVRAVRKDQTSKLKSVLQDARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSARSVILIFSVRESGKFQGFARLSS 420
BLAST of DN621009 vs. ExPASy Swiss-Prot
Match: YTDC1_HUMAN (YTH domain-containing protein 1 OS=Homo sapiens GN=YTHDC1 PE=1 SV=3) HSP 1 Score: 73.559 bits (179), Expect = 1.252e-12 Identity = 50/153 (32.68%), Postives = 74/153 (48.37%), Query Frame = 2 Query: 284 D*KDMSSDTAKENASVVDSSVTEKHDVGNSDDPESSSYKANE------HRCPSLAKEAKAGHSNGQ----------LENSTDNNKGKLYNTRYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAFHNSGKVILIFSVNMSGFFXGYAQMMS 694 D + +SD+ E+ S D SV SD+ + +A R S A E+ AG ++ T K L + R+F+IKS NH+N+ L+ K +W+T +NE L AF ++ VILIFSV SG F G+A++ S Sbjct: 265 DTRSEASDSGSESVSFTDGSVRSGSGTDGSDEKKKERKRARGISPIVFDRSGSSASESYAGSEKKHEKLSSSVRAVRKDQTSKLKYVLQDARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSARSVILIFSVRESGKFQGFARLSS 417
BLAST of DN621009 vs. ExPASy Swiss-Prot
Match: C3H45_ORYSJ (Zinc finger CCCH domain-containing protein 45 OS=Oryza sativa subsp. japonica GN=Os06g0677700 PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.384e-11 Identity = 33/66 (50.00%), Postives = 47/66 (71.21%), Query Frame = 2 Query: 506 TRYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAFHNSGKVILIFSVNMSGFFXGYAQMMSSVG 703 +RYFI+KS N +N+++S+++ IWATQ NE L EAF + VILIFS+N + F G A+M S +G Sbjct: 260 SRYFIVKSCNRENLEISVQQGIWATQRSNEAKLNEAFESIENVILIFSINRTRNFQGCAKMTSRIG 325
BLAST of DN621009 vs. ExPASy Swiss-Prot
Match: CPSF_ARATH (Cleavage and polyadenylation specificity factor CPSF30 OS=Arabidopsis thaliana GN=CPSF30 PE=1 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.084e-11 Identity = 33/65 (50.77%), Postives = 45/65 (69.23%), Query Frame = 2 Query: 509 RYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAFHNSGKVILIFSVNMSGFFXGYAQMMSSVG 703 RYF++KS N +N +LS+++ +WATQ NE L EAF + VILIFSVN + F G A+M S +G Sbjct: 238 RYFVVKSNNRENFELSVQQGVWATQRSNEAKLNEAFDSVENVILIFSVNRTRHFQGCAKMTSRIG 302 The following BLAST results are available for this feature:
BLAST of DN621009 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 4
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >DN621009 ID=DN621009; Name=DN621009; organism=Citrus sinensis; type=EST; length=727bpback to top |