DN620941

Overview
NameDN620941
Unique NameDN620941
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length515
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN620941 vs. ExPASy Swiss-Prot
Match: ISPE_SOLLC (4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplastic/chromoplastic (Fragment) OS=Solanum lycopersicum GN=ISPE PE=1 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 2.485e-54
Identity = 103/149 (69.13%), Postives = 123/149 (82.55%), Query Frame = 1
Query:   88 SIRPNGFSFFKPKINFRRTQLI-------KCTRKQVEVVYDPDERRNKLADEVDKEAPLSRLTLFSPCKINAFLRITNKREDGFHDLASLFHVISLGDTIKFSLSPLKSRDRLSTNVPGIPVDDSNLIIKALNLYRKKTESDNFFWIHL 513
            S RP+G S+F   I FRR   +       + ++KQVE+ Y+P+E+ NKLADEVD+EA LSRLTLFSPCKIN FLRIT+KR+DG+HDLASLFHVISLGD IKFSLSP KS+DRLSTNV G+P+D+ NLIIKALNLYRKKT +DN+FWIHL
Sbjct:   28 SNRPHGSSYFNKNIQFRRNSFVIVKASGSRTSKKQVEITYNPEEKFNKLADEVDREAGLSRLTLFSPCKINVFLRITSKRDDGYHDLASLFHVISLGDKIKFSLSPSKSKDRLSTNVAGVPLDERNLIIKALNLYRKKTGTDNYFWIHL 176          
BLAST of DN620941 vs. ExPASy Swiss-Prot
Match: ISPE_ARATH (4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplastic OS=Arabidopsis thaliana GN=ISPE PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 1.233e-53
Identity = 105/143 (73.43%), Postives = 117/143 (81.82%), Query Frame = 1
Query:   88 SIRPNGFSFFKPKINFRRTQL-IKCTRKQVEVVYDPDERRNKLADEVDKEAPLSRLTLFSPCKINAFLRITNKREDGFHDLASLFHVISLGDTIKFSLSPLKSRDRLSTNVPGIPVDDSNLIIKALNLYRKKTESDNFFWIHL 513
            S + +  S F PK+        +K +RKQVE+V+DPDER NK+ D+VDKEAPLSRL LFSPCKIN FLRIT KREDGFHDLASLFHVISLGDTIKFSLSP KS+DRLSTNV G+PVD  NLIIKALNLYRKKT S+ FFWIHL
Sbjct:   18 SFKTSSSSSFSPKLLRPLLSFSVKASRKQVEIVFDPDERLNKIGDDVDKEAPLSRLKLFSPCKINVFLRITGKREDGFHDLASLFHVISLGDTIKFSLSPSKSKDRLSTNVQGVPVDGRNLIIKALNLYRKKTGSNRFFWIHL 160          
BLAST of DN620941 vs. ExPASy Swiss-Prot
Match: ISPE_MENPI (4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplastic OS=Mentha piperita GN=ISPE PE=1 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.194e-48
Identity = 97/149 (65.10%), Postives = 112/149 (75.17%), Query Frame = 1
Query:   88 SIRPNGFSFFKPKINFRRTQLIKCT-------RKQVEVVYDPDERRNKLADEVDKEAPLSRLTLFSPCKINAFLRITNKREDGFHDLASLFHVISLGDTIKFSLSPLKSRDRLSTNVPGIPVDDSNLIIKALNLYRKKTESDNFFWIHL 513
            S +PNG S F+ K+   R  +I+         R Q+EVVYD + + NKLADEVD+EA +SRLTLFSPCKIN FLRIT KREDGFHDLASLFHVISLGD IKFSLSP K      TNVPG+P+D+ NLIIKALNL+RKKT +D  FWIHL
Sbjct:   37 SFKPNGSSSFRKKLQSSRIHIIRAAASDPTTGRNQLEVVYDLENKLNKLADEVDREAGISRLTLFSPCKINVFLRITGKREDGFHDLASLFHVISLGDKIKFSLSPSKFNGSFVTNVPGVPLDEKNLIIKALNLFRKKTGTDKHFWIHL 185          
BLAST of DN620941 vs. ExPASy Swiss-Prot
Match: ISPE_PARUW (4-diphosphocytidyl-2-C-methyl-D-erythritol kinase OS=Protochlamydia amoebophila (strain UWE25) GN=ispE PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.686e-16
Identity = 42/88 (47.73%), Postives = 57/88 (64.77%), Query Frame = 1
Query:  250 LTLFSPCKINAFLRITNKREDGFHDLASLFHVISLGDTIKFSLSPLKSRDRLSTNVPGIPVDDSNLIIKALNLYRKKTESDNFFWIHL 513
            + LFSP KIN FL++  KR DG+H+L+SLF  IS GD + F    +   D L+ + P +P DDSNL++KA+ L+R KT  D    IHL
Sbjct:   15 IRLFSPAKINLFLKVIGKRADGYHELSSLFQTISAGDILTFQRQTI---DTLTCSDPYLPTDDSNLVLKAMRLFRSKTGLDLHLRIHL 99          
BLAST of DN620941 vs. ExPASy Swiss-Prot
Match: ISPE_MARAV (4-diphosphocytidyl-2-C-methyl-D-erythritol kinase OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=ispE PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 8.086e-13
Identity = 36/83 (43.37%), Postives = 53/83 (63.86%), Query Frame = 1
Query:  241 LSRLTLFSPCKINAFLRITNKREDGFHDLASLFHVISLGDTIKFSLSPLKSRDRLSTNVPGIPVDDSNLIIKALNLYRKKTES 489
            L+R+TL SP K+N FL I  +R DG+H+L +LF  +  GD + F+L+P +   RL+  VPG+P D  NL+I+A       TE+
Sbjct:    2 LTRITLPSPAKLNLFLHIVGRRPDGYHELQTLFQFLDYGDELTFTLTPEQPGIRLAEPVPGVP-DSDNLVIRAAKALAATTEN 83          
The following BLAST results are available for this feature:
BLAST of DN620941 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
ISPE_SOLLC2.485e-5469.134-diphosphocytidyl-2-C-methyl-D-erythritol kinase,... [more]
ISPE_ARATH1.233e-5373.434-diphosphocytidyl-2-C-methyl-D-erythritol kinase,... [more]
ISPE_MENPI1.194e-4865.104-diphosphocytidyl-2-C-methyl-D-erythritol kinase,... [more]
ISPE_PARUW2.686e-1647.734-diphosphocytidyl-2-C-methyl-D-erythritol kinase ... [more]
ISPE_MARAV8.086e-1343.374-diphosphocytidyl-2-C-methyl-D-erythritol kinase ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_06A10_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN620941 ID=DN620941; Name=DN620941; organism=Citrus sinensis; type=EST; length=515bp
ATTCAATCCTCGTGGAGACAGAGGAGAAGCATGGCGATGGCGTCTTCTTA
TTTGCAGTGCAATCACCAGCACCAACTCCATCTACCTTCGATTAGGCCAA
ATGGGTTTTCTTTTTTTAAACCAAAAATAAATTTTAGAAGGACCCAACTT
ATCAAATGCACCAGAAAGCAAGTCGAGGTAGTGTATGATCCTGATGAAAG
GAGAAACAAGTTGGCAGATGAAGTAGACAAGGAAGCTCCTCTTTCAAGGC
TCACTCTGTTCTCACCTTGCAAGATAAATGCTTTTTTGAGAATTACAAAC
AAGAGAGAAGACGGGTTTCATGATTTAGCATCGCTCTTTCATGTAATTAG
TTTAGGTGATACAATTAAGTTCTCTTTGTCACCCTTGAAGAGTAGGGATC
GTTTGTCAACCAATGTGCCAGGGATACCTGTTGATGATAGTAATTTGATA
ATTAAGGCGCTTAACCTTTATAGGAAGAAGACTGAGAGTGACAATTTCTT
TTGGATTCATCTTGA
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