CX047542

Overview
NameCX047542
Unique NameCX047542
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length879
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047542 vs. ExPASy Swiss-Prot
Match: TCPE_ARATH (T-complex protein 1 subunit epsilon OS=Arabidopsis thaliana GN=At1g24510 PE=2 SV=1)

HSP 1 Score: 416.387 bits (1069), Expect = 1.080e-115
Identity = 209/226 (92.48%), Postives = 221/226 (97.79%), Query Frame = 1
Query:    7 LMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPSEY 684
            LMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAG+VREKSFGTT++RMLYIEHCANS+AVT+FIRGGNKMMIEETKRSIHDALCVARNLIRN SIVYGGGAAEIACS+AVDAAAD+YPGVEQYAIRAFA+ALD++PMALAENSGLQPIETLSAVK+QQI+EN P  GIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVIS SEY
Sbjct:  310 LMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGVVREKSFGTTKERMLYIEHCANSKAVTVFIRGGNKMMIEETKRSIHDALCVARNLIRNKSIVYGGGAAEIACSLAVDAAADKYPGVEQYAIRAFAEALDSVPMALAENSGLQPIETLSAVKSQQIKENIPFYGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISNSEY 535          
BLAST of CX047542 vs. ExPASy Swiss-Prot
Match: TCPE2_AVESA (T-complex protein 1 subunit epsilon OS=Avena sativa PE=2 SV=1)

HSP 1 Score: 401.749 bits (1031), Expect = 2.752e-111
Identity = 201/226 (88.94%), Postives = 216/226 (95.58%), Query Frame = 1
Query:    7 LMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPSEY 684
            LM R LPAVRWVGGVELELIAIATGGRIVPRFQEL+ EKLGKAGLVREKSFGTT+DRMLYIE CANS+AVTIFIRGGNKMMIEETKRSIHDALCVARNLI NNSIVYGGG+AEI+CSIAV+AAADR+PGVEQYAIRAFADALDAIP+ALAENSGL PI+TL+ VK+Q ++ENN  CGIDCNDVGTNDM+EQNVFETLIGKQQQILLATQVVKMILKIDDVI+PSEY
Sbjct:  310 LMQRELPAVRWVGGVELELIAIATGGRIVPRFQELSTEKLGKAGLVREKSFGTTKDRMLYIEKCANSKAVTIFIRGGNKMMIEETKRSIHDALCVARNLIINNSIVYGGGSAEISCSIAVEAAADRHPGVEQYAIRAFADALDAIPLALAENSGLPPIDTLTVVKSQHVKENNSRCGIDCNDVGTNDMKEQNVFETLIGKQQQILLATQVVKMILKIDDVITPSEY 535          
BLAST of CX047542 vs. ExPASy Swiss-Prot
Match: TCPE1_AVESA (T-complex protein 1 subunit epsilon OS=Avena sativa PE=2 SV=1)

HSP 1 Score: 401.749 bits (1031), Expect = 2.752e-111
Identity = 201/226 (88.94%), Postives = 216/226 (95.58%), Query Frame = 1
Query:    7 LMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPSEY 684
            LM R LPAVRWVGGVELELIAIATGGRIVPRFQEL+ EKLGKAGLVREKSFGTT+DRMLYIE CANS+AVTIFIRGGNKMMIEETKRSIHDALCVARNLI NNSIVYGGG+AEI+CSIAV+AAADR+PGVEQYAIRAFADALDAIP+ALAENSGL PI+TL+ VK+Q ++ENN  CGIDCNDVGTNDM+EQNVFETLIGKQQQILLATQVVKMILKIDDVI+PSEY
Sbjct:  310 LMQRELPAVRWVGGVELELIAIATGGRIVPRFQELSTEKLGKAGLVREKSFGTTKDRMLYIEKCANSKAVTIFIRGGNKMMIEETKRSIHDALCVARNLIINNSIVYGGGSAEISCSIAVEAAADRHPGVEQYAIRAFADALDAIPLALAENSGLPPIDTLTVVKSQHVKENNSRCGIDCNDVGTNDMKEQNVFETLIGKQQQILLATQVVKMILKIDDVITPSEY 535          
BLAST of CX047542 vs. ExPASy Swiss-Prot
Match: TCPE_MACFA (T-complex protein 1 subunit epsilon OS=Macaca fascicularis GN=CCT5 PE=2 SV=1)

HSP 1 Score: 325.479 bits (833), Expect = 2.506e-88
Identity = 160/225 (71.11%), Postives = 192/225 (85.33%), Query Frame = 1
Query:    7 LMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPSE 681
            L+  NLPAVRWVGG E+ELIAIATGGRIVPRF ELT EKLG AGLV+E SFGTT+D+ML IE C NSRAVTIFIRGGNKM+IEE KRS+HDALCV RNLIR+N +VYGGGAAEI+C++AV   AD+ P +EQYA+RAFADAL+ IPMAL+ENSG+ PI+T++ V+ +Q++E NP  GIDC   GTNDM++Q+V ETLIGK+QQI LATQ+V+MILKIDD+  P E
Sbjct:  314 LLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVQEISFGTTKDKMLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKCPTLEQYAMRAFADALEVIPMALSENSGMNPIQTMTEVRARQVKEMNPALGIDCLHKGTNDMKQQHVIETLIGKKQQISLATQMVRMILKIDDIRKPGE 538          
BLAST of CX047542 vs. ExPASy Swiss-Prot
Match: TCPE_HUMAN (T-complex protein 1 subunit epsilon OS=Homo sapiens GN=CCT5 PE=1 SV=1)

HSP 1 Score: 325.479 bits (833), Expect = 2.506e-88
Identity = 160/225 (71.11%), Postives = 192/225 (85.33%), Query Frame = 1
Query:    7 LMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPSE 681
            L+  NLPAVRWVGG E+ELIAIATGGRIVPRF ELT EKLG AGLV+E SFGTT+D+ML IE C NSRAVTIFIRGGNKM+IEE KRS+HDALCV RNLIR+N +VYGGGAAEI+C++AV   AD+ P +EQYA+RAFADAL+ IPMAL+ENSG+ PI+T++ V+ +Q++E NP  GIDC   GTNDM++Q+V ETLIGK+QQI LATQ+V+MILKIDD+  P E
Sbjct:  314 LLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVQEISFGTTKDKMLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKCPTLEQYAMRAFADALEVIPMALSENSGMNPIQTMTEVRARQVKEMNPALGIDCLHKGTNDMKQQHVIETLIGKKQQISLATQMVRMILKIDDIRKPGE 538          
BLAST of CX047542 vs. ExPASy Swiss-Prot
Match: TCPE_PONAB (T-complex protein 1 subunit epsilon OS=Pongo abelii GN=CCT5 PE=2 SV=1)

HSP 1 Score: 323.553 bits (828), Expect = 9.524e-88
Identity = 159/225 (70.67%), Postives = 191/225 (84.89%), Query Frame = 1
Query:    7 LMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPSE 681
            L+  NLPAVRWVGG E+ELIAIATGGRIVPRF ELT EKLG AGLV+E SFGTT+D+ML IE C NSRAVTIFIRGGNKM+IEE KRS+HDALCV RNLIR+N +VYGGGAAE +C++AV   AD+ P +EQYA+RAFADAL+ IPMAL+ENSG+ PI+T++ V+ +Q++E NP  GIDC   GTNDM++Q+V ETLIGK+QQI LATQ+V+MILKIDD+  P E
Sbjct:  314 LLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVQEISFGTTKDKMLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAETSCALAVSQEADKCPTLEQYAMRAFADALEVIPMALSENSGMNPIQTMTEVRARQVKEMNPALGIDCLHKGTNDMKQQHVIETLIGKKQQISLATQMVRMILKIDDIRKPGE 538          
BLAST of CX047542 vs. ExPASy Swiss-Prot
Match: TCPE_RAT (T-complex protein 1 subunit epsilon OS=Rattus norvegicus GN=Cct5 PE=1 SV=1)

HSP 1 Score: 321.242 bits (822), Expect = 4.727e-87
Identity = 158/225 (70.22%), Postives = 191/225 (84.89%), Query Frame = 1
Query:    7 LMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPSE 681
            L+   LPAVRWVGG E+ELIAIATGGRIVPRF ELT EKLG AG+VRE SFGTT+D+ML IE C NSRAVTIFIRGGNKM+IEE KRS+HDALCV RNLIR+N +VYGGGAAEI+C++AV   AD+ P +EQYA+RAFADAL+ IPMAL+ENSG+ PI+T++ V+ +Q++E+NP  GIDC   G+NDM+ Q+V ETLIGK+QQI LATQ+V+MILKIDD+  P E
Sbjct:  314 LLQNGLPAVRWVGGPEIELIAIATGGRIVPRFSELTSEKLGFAGVVREISFGTTKDKMLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKCPTLEQYAMRAFADALEVIPMALSENSGMNPIQTMTEVRARQVKESNPALGIDCLHKGSNDMQYQHVIETLIGKKQQISLATQMVRMILKIDDIRKPGE 538          
BLAST of CX047542 vs. ExPASy Swiss-Prot
Match: TCPE_MOUSE (T-complex protein 1 subunit epsilon OS=Mus musculus GN=Cct5 PE=1 SV=1)

HSP 1 Score: 319.316 bits (817), Expect = 1.796e-86
Identity = 157/225 (69.78%), Postives = 191/225 (84.89%), Query Frame = 1
Query:    7 LMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPSE 681
            L+   LPAVRWVGG E+ELIAIATGGRIVPRF ELT EKLG AG+V+E SFGTT+D+ML IE C NSRAVTIFIRGGNKM+IEE KRS+HDALCV RNLIR+N +VYGGGAAEI+C++AV   AD+ P +EQYA+RAFADAL+ IPMAL+ENSG+ PI+T++ V+ +Q++E+NP  GIDC   G+NDM+ Q+V ETLIGK+QQI LATQ+V+MILKIDD+  P E
Sbjct:  314 LLQNGLPAVRWVGGPEIELIAIATGGRIVPRFSELTSEKLGFAGVVQEISFGTTKDKMLVIEKCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKCPTLEQYAMRAFADALEVIPMALSENSGMNPIQTMTEVRARQVKESNPALGIDCLHKGSNDMQYQHVIETLIGKKQQISLATQMVRMILKIDDIRKPGE 538          
BLAST of CX047542 vs. ExPASy Swiss-Prot
Match: TCPE_DICDI (T-complex protein 1 subunit epsilon OS=Dictyostelium discoideum GN=cct5 PE=3 SV=1)

HSP 1 Score: 310.457 bits (794), Expect = 8.343e-84
Identity = 151/221 (68.33%), Postives = 182/221 (82.35%), Query Frame = 1
Query:    7 LMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVI 669
            L+  NLPAVRWVGG++LE IA+ATGGRIV RF++++ +KLG+AGLVRE  FGTTQDR L IE C N+ AVTIF+RGGNKM++EE KRSIHDALCV RNLIR+N ++YGGG++EI+C + + A AD    +EQYA+RAFADALDAIP+ALAENSGL  IE+LS VK  QI+E NP  GIDCN   TNDM+ Q+VF+TL GK QQ LLA QVVKMILKIDD+I
Sbjct:  310 LLQNNLPAVRWVGGLDLEKIAMATGGRIVARFEDVSADKLGRAGLVREVGFGTTQDRYLSIEDCPNTNAVTIFVRGGNKMIVEEAKRSIHDALCVTRNLIRDNRVIYGGGSSEISCGLKISAMADDIASIEQYAVRAFADALDAIPLALAENSGLPSIESLSTVKAMQIKEKNPRLGIDCNHRDTNDMKAQHVFDTLPGKTQQFLLANQVVKMILKIDDII 530          
BLAST of CX047542 vs. ExPASy Swiss-Prot
Match: TCPE_SCHPO (T-complex protein 1 subunit epsilon OS=Schizosaccharomyces pombe GN=cct5 PE=2 SV=1)

HSP 1 Score: 303.908 bits (777), Expect = 7.809e-82
Identity = 143/221 (64.71%), Postives = 186/221 (84.16%), Query Frame = 1
Query:    7 LMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVI 669
            L+  NLPAVRWVGG E+ELIAIAT GRIVPRF++L+ +KLG AG+VRE SFGTT+D++L IE CANSRAVT+F+RG NKM+++E KR++HDALCV RNLIR+N +VYGGGAAEI+CS+AV   A++ PG++QY++ AFADALD IP+ALAENSGL  IE L+AVK + ++EN    GIDC   G+NDMR+Q V + LIGK+QQ+LLATQ+ +M+LK++D+I
Sbjct:  316 LLQNNLPAVRWVGGPEIELIAIATNGRIVPRFEDLSSDKLGSAGIVREVSFGTTRDKILVIEKCANSRAVTVFVRGSNKMIVDEAKRALHDALCVVRNLIRDNRVVYGGGAAEISCSLAVTKEAEKIPGIDQYSMGAFADALDTIPLALAENSGLSSIEALTAVKARHVKENKAYLGIDCLQTGSNDMRKQFVIDPLIGKKQQLLLATQLCRMVLKVNDII 536          
The following BLAST results are available for this feature:
BLAST of CX047542 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
TCPE_ARATH1.080e-11592.48T-complex protein 1 subunit epsilon OS=Arabidopsis... [more]
TCPE2_AVESA2.752e-11188.94T-complex protein 1 subunit epsilon OS=Avena sativ... [more]
TCPE1_AVESA2.752e-11188.94T-complex protein 1 subunit epsilon OS=Avena sativ... [more]
TCPE_MACFA2.506e-8871.11T-complex protein 1 subunit epsilon OS=Macaca fasc... [more]
TCPE_HUMAN2.506e-8871.11T-complex protein 1 subunit epsilon OS=Homo sapien... [more]
TCPE_PONAB9.524e-8870.67T-complex protein 1 subunit epsilon OS=Pongo abeli... [more]
TCPE_RAT4.727e-8770.22T-complex protein 1 subunit epsilon OS=Rattus norv... [more]
TCPE_MOUSE1.796e-8669.78T-complex protein 1 subunit epsilon OS=Mus musculu... [more]
TCPE_DICDI8.343e-8468.33T-complex protein 1 subunit epsilon OS=Dictyosteli... [more]
TCPE_SCHPO7.809e-8264.71T-complex protein 1 subunit epsilon OS=Schizosacch... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_14G06_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-14G06-N11-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047542 ID=CX047542; Name=CX047542; organism=Citrus sinensis; type=EST; length=879bp
TGCCGATTAATGCACAGGAACCTGCCTGCTGTCCGCTGGGTTGGTGGTGT
AGAATTGGAGCTGATTGCCATAGCCACAGGTGGAAGAATTGTTCCAAGGT
TTCAGGAGTTGACACCAGAAAAACTTGGAAAGGCTGGTTTGGTTCGAGAA
AAGTCTTTTGGTACTACACAAGATAGAATGCTGTACATTGAACACTGTGC
AAATTCTAGGGCTGTAACCATTTTCATCCGTGGAGGTAACAAAATGATGA
TAGAGGAGACCAAGCGGAGCATACATGATGCCTTGTGTGTGGCTAGGAAT
CTGATTCGCAACAATTCTATTGTGTATGGCGGGGGTGCAGCTGAGATAGC
TTGCTCAATTGCTGTAGATGCAGCTGCAGATAGATATCCGGGAGTTGAAC
AGTATGCTATCAGGGCATTTGCAGATGCGTTGGATGCTATCCCGATGGCA
CTTGCAGAAAATAGTGGTCTCCAACCTATTGAGACGCTATCGGCTGTGAA
AAATCAGCAAATTAGGGAGAATAATCCAAACTGCGGAATAGACTGCAATG
ATGTTGGAACCAATGACATGCGTGAGCAAAATGTCTTTGAGACTTTGATT
GGGAAGCAGCAGCAGATTCTTCTCGCAACACAAGTTGTGAAGATGATTTT
GAAAATTGATGATGTCATTTCCCCCTCTGAATATTGATTCATTCTAAGGT
CTAAGTTTCTGTTTGATTTTGCTTCACCAAGAATGCATTTCATGTATTTT
GTTGGCTTGGTATCGACCCTGTCCACTTGATAACGACTGACTTTAAAGGT
TATGGGTTGGTTTTTGTTAAAATTGTACCGTGAGTTACTTTTTCTGGTAG
TGAGAATTGATGATTTTGCTTGTTTAAAA
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