CX047415

Overview
NameCX047415
Unique NameCX047415
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length879
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047415 vs. ExPASy Swiss-Prot
Match: CSGA_MYXXA (C-factor OS=Myxococcus xanthus GN=csgA PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.023e-17
Identity = 55/177 (31.07%), Postives = 96/177 (54.24%), Query Frame = -1
Query:  268 GSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGSGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKLFTKEFSVQKLLNIINNVKSHDNGKFFAWDGQEIPW 798
            G +++LIN +G+  +         L  V+ + +   + +NA+GP+ V   M P L+ G       +  VA++++R+GS+  N  GG ++YR SKAALN   +S+S +   + +  + +LLHPG V TD+  P    +P         SV+ +L +I+ +    +G+FF + G E+PW
Sbjct:   11 GPVDVLINNAGVSGL------WCALGDVDYADMARTFTINALGPLRVTSAMLPGLRQGA------LRRVAHVTSRMGSLAANTDGGAYAYRMSKAALNMAVRSMSTDL--RPEGFVTVLLHPGWVQTDMGGP-DATLPAPD------SVRGMLRVIDGLNPEHSGRFFDYQGTEVPW 166          
BLAST of CX047415 vs. ExPASy Swiss-Prot
Match: YCP9_SCHPO (Uncharacterized oxidoreductase C663.09c OS=Schizosaccharomyces pombe GN=SPCC663.09c PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.960e-16
Identity = 64/209 (30.62%), Postives = 103/209 (49.28%), Query Frame = -1
Query:  268 LQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGSGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLS----RPFQRNVPEGKLFTK------EFSVQKLLNIINNVKSHDNGKFFAWDGQEIPW 864
            ++LD+T + +   +A+S+ +    +++L   SGI       Q   T+ +  +      Y+ N +GPI V K   PLL       ++    V   S+  GS+GD R  G+ +Y  SKAA+N   K +SVE   +    I I  HPG V TD++    + F    PE   + K      E SV  +L +++N+K  +NG F+ +DG  IP+
Sbjct:   59 VELDVTSQQSANEAAQSVAKAVDGIDVLWLNSGIC------QSYYTVMEAPEEVWNAHYQTNVLGPIHVFKAFYPLLT------KKKTRQVIFTSSECGSMGDFRATGFSAYGQSKAAINFTMKELSVELADEHFTFISI--HPGVVKTDMNADAIKKFTETSPEMLTYLKKVTIIPEESVSSMLKVVDNLKPENNGSFYRYDGTIIPF 253          
BLAST of CX047415 vs. ExPASy Swiss-Prot
Match: YJNK_SCHPO (Uncharacterized oxidoreductase C24B10.20 OS=Schizosaccharomyces pombe GN=SPCC24B10.20 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.648e-13
Identity = 58/210 (27.62%), Postives = 104/210 (49.52%), Query Frame = -1
Query:  268 VLQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGSGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDL----SRPFQRNVPE------GKLFTKEFSVQKLLNIINNVKSHDNGKFFAWDGQEIPW 867
            +++LD+T   + + +A  +++    +++L   SGI       QP   + K      M  Y+ N +GPI V +    LLK G     +++   ++++A +G +  N    + +Y  SKAALN   K +S E   +KD  + + +HPG V+TD+     +      PE          + E S   +L I++N+K+ DNG F+  DG ++P+
Sbjct:   59 IIKLDVTSLRSAKDAAMQVEKVVKCIDVLWVNSGI---SKSFQP---VLKTSDELWMSHYQTNVLGPIHVYQAFYHLLKEGKL---KNIVFTSSMAACMGGVRPNT---YSAYGQSKAALNYTMKEISFEL--EKDGFVVVSIHPGVVNTDMFVNAMQKLASKYPEMVESIKSNAISPEQSASSMLKIVDNLKTEDNGMFYNLDGTKLPF 254          
BLAST of CX047415 vs. ExPASy Swiss-Prot
Match: YCP6_SCHPO (Uncharacterized oxidoreductase C663.06c OS=Schizosaccharomyces pombe GN=SPCC663.06c PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.006e-12
Identity = 62/212 (29.25%), Postives = 100/212 (47.17%), Query Frame = -1
Query:  268 VLQLDLTVESTIEASAKSIKEKYGSLNLLINASGILSIPNVL--QPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGSGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGK-----LFTKEF-----SVQKLLNIINNVKSHDNGKFFAWDGQEIPW 867
            +++LD++   +   +A+ + +  G +++L   SGI    N +   P+   N          Y+ N +GPI V +   PL+K G S I      +   S+ VGS+G         Y  SKAALN   K +S E   + +  I I +HPG V TD ++       E K     +F K+      S   +L +++N+K  +NG FF +DG  IP+
Sbjct:   58 IIKLDISSLESANEAAQEVAKAVGKVDVLWVNSGIFHSFNTVLNTPDDVWNS--------HYKTNVLGPIHVYQAFYPLVKKGESKI------IVFTSSLVGSMGAFFPFNQSGYGQSKAALNFTMKEISFEL--QDEGFIVISIHPGMVRTDSAQEAVNQHAEAKPEILDIFAKQALAPDQSASDMLKVVDNLKPENNGFFFNYDGTTIPY 253          
BLAST of CX047415 vs. ExPASy Swiss-Prot
Match: YCP8_SCHPO (Uncharacterized oxidoreductase C663.08c OS=Schizosaccharomyces pombe GN=SPCC663.08c PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.519e-12
Identity = 61/212 (28.77%), Postives = 102/212 (48.11%), Query Frame = -1
Query:  268 VLQLDLTVESTIEASAKSIKEKYGSLNLL-INASGILSI-PNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGSGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGK-----LFTK-----EFSVQKLLNIINNVKSHDNGKFFAWDGQEIPW 867
            +++LD++   +   +A+ + +   ++++L +N++   S  P V  P+   N          Y+ N +GPI V +   PL+K G S I      +   S+  GS+G        +Y  SKAALN   K +S E   + +  I I +HPG V TD ++       E K     LF K     E S   +L +++N+K  +NG F+ +DG  IP+
Sbjct:   58 IIKLDVSSLESANEAAQEVTKVVDAVDVLWVNSAVFHSFGPVVNTPDDVWNS--------HYKTNVLGPIHVYQAFYPLIKKGRSKI------IVFTSSLAGSMGAFFPSSQSAYGQSKAALNYTMKEISFEL--QDEGFIVISIHPGAVRTDSAQEIVNQHAEKKPEILDLFAKQALTPEKSASDMLKVVDNLKPENNGLFYNYDGTIIPF 253          
BLAST of CX047415 vs. ExPASy Swiss-Prot
Match: YKH1_YEAST (Uncharacterized oxidoreductase YKL071W OS=Saccharomyces cerevisiae GN=YKL071W PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.113e-11
Identity = 61/211 (28.91%), Postives = 98/211 (46.45%), Query Frame = -1
Query:  277 ERLDVLQLDLTVESTIEASAKSIKEK--YGSLNLLINASGIL-SIPNVLQPETTLNKVEKSSLMLAYEVNAVGPILVIKHMSPLLKVGGSGIERDVAVVANLSARVGSIGDNRLGGWHSYRASKAALNQLTKSVSVEFGRKKDPVICILLHPGTVDTDLSRPFQRNVPEGKL-------FTKEFSVQKLLNIINNVKSHDNGKFFAWDGQE 879
            + + ++QLDLT + +I   A  IK+   +  +++ I  S +  S   VL+         KS  +  Y  NA+GPIL ++ + PLL +      +    +  +S+  GSI         +Y  SKAALN   K++S E   K +    +  HPG V TD+ +    +  E  +        T E S   L+++   +   DNGKFF +DG E
Sbjct:   58 KNIHIVQLDLTKDESIGNIADEIKKTPFFLGIDIFIACSAVSDSYYKVLE-------TPKSVWLNHYSTNALGPILALQKVYPLLLL------KKTRKIFFISSVAGSINAFVPLSVSAYGQSKAALNYAVKTLSFEL--KPEGFTVVAFHPGMVSTDMGQYGLDHFKEKNIDISGVNIITPEESASALIDVFRKILPEDNGKFFNYDGSE 253          
The following BLAST results are available for this feature:
BLAST of CX047415 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
CSGA_MYXXA3.023e-1731.07C-factor OS=Myxococcus xanthus GN=csgA PE=1 SV=1[more]
YCP9_SCHPO1.960e-1630.62Uncharacterized oxidoreductase C663.09c OS=Schizos... [more]
YJNK_SCHPO2.648e-1327.62Uncharacterized oxidoreductase C24B10.20 OS=Schizo... [more]
YCP6_SCHPO1.006e-1229.25Uncharacterized oxidoreductase C663.06c OS=Schizos... [more]
YCP8_SCHPO8.519e-1228.77Uncharacterized oxidoreductase C663.08c OS=Schizos... [more]
YKH1_YEAST1.113e-1128.91Uncharacterized oxidoreductase YKL071W OS=Saccharo... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS09_14A09_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-14A09-B17-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047415 ID=CX047415; Name=CX047415; organism=Citrus sinensis; type=EST; length=879bp
TTTTTTTTTTTTCCCAACAATTCTTGTCTTATTTTTGTATCGCTGCAATG
GATTTGTTTAGAGTTTACTGTTGGCCAGCAGGTAACTGCTTACAACTGAA
ACAATCCAAGCACGTAAATCAGCTACAACAAAATATAAAAAATGTTGAAC
AGAGTTCACACATCAATCAACTGAATTTAATGTGTACCAATACTGGAGAC
ACACAAGTTTCATATTCAATACCAGCTTACATCCTTTTGCATATGCAAAG
AGGTATAATATGGACTACCAAGGGATTTCTTGACCATCCCATGCAAAGAA
CTTGCCATTATCATGGCTCTTTACGTTGTTGATGATGTTTAACAGCTTCT
GCACCGAGAATTCTTTGGTGAAAAGCTTGCCTTCTGGAACATTTCTCTGA
AATGGCCGAGAAAGATCAGTATCTACAGTGCCTGGATGCAACAGAATACA
TATAACTGGATCCTTCTTTCGACCAAACTCCACTGACACAGATTTTGTCA
ACTGATTAAGGGCAGCCTTTGATGCTCGATAAGAGTGCCACCCACCTAGG
CGATTGTCCCCAATGGATCCTACCCTGGCACTTAAATTGGCCACAACAGC
AACATCCCTCTCAATCCCACTGCCTCCGACTTTAAGAAGAGGCGACATAT
GCTTTATCACTAGGATAGGACCCACCGCATTAACCTCATAAGCAAGCATC
AAGGATGATTTCTCTACTTTGTTTAACGTTGTTTCTGGTTGCAAGACATT
CGGTATTGAGAGAATGCCAGAAGCATTAATGAGAAGGTTCAAAGAGCCAT
ATTTTTCTTTTATAGACTTTGCAGATGCCTCTATGGTGCTTTCCACTGTC
AAATCCAACTGTAAAACGTCAAGTCGTTC
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