CX047192
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX047192 vs. ExPASy Swiss-Prot
Match: POL_SFV1 (Pro-Pol polyprotein OS=Simian foamy virus type 1 GN=pol PE=1 SV=3) HSP 1 Score: 102.449 bits (254), Expect = 3.568e-21 Identity = 63/215 (29.30%), Postives = 102/215 (47.44%), Query Frame = 2 Query: 131 GRSLAHKVLRQGYFWPTMHQDAQRKTRSCASC--QSFANFSNQPPEKLTSMASPWLFAQWGIDLIGPLPKGRGAATHAIVAIDYFTKWIEVEALSRITEKKTTDFVWRNLVCRYGIPYALVTDNGRQFDNHSFRDFCQNLGIELKYCSPAHPQSNGQVEAANKTVKRLLKTRLGAKKGAWVDELSGVLWAYRTTHKTATGETPFALAFGHEAVVP 769 GR + Y+WP + +D + R C C + N ++ P + P F ++ ID IGPLP G H +V +D T ++ + + T + N++ IP L +D G F + +F D+ + GI+L++ +P HPQS+G+VE N +KRLL L + W D L V A ++ ++ TP L FG ++ P Sbjct: 818 GRDATFLKVSSKYWWPNLRKDVVKSIRQCKQCLVTNATNLTSPPILRPVKPLKP--FDKFYIDYIGPLPPSNGYL-HVLVVVDSMTGFVWLYPTKAPSTSATVKAL--NMLTSIAIPKVLHSDQGAAFTSSTFADWAKEKGIQLEFSTPYHPQSSGKVERKNSDIKRLLTKLLIGRPAKWYDLLPVVQLALNNSYSPSSKYTPHQLLFGVDSNTP 1027
BLAST of CX047192 vs. ExPASy Swiss-Prot
Match: POL_FFV (Pro-Pol polyprotein OS=Feline foamy virus GN=pol PE=3 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 4.280e-21 Identity = 64/219 (29.22%), Postives = 106/219 (48.40%), Query Frame = 2 Query: 119 NHSGGRSLAHKVLRQGYFWPTMHQDAQRKTRSCASCQSFANFSNQP--PEKLTSMASPWLFAQWGIDLIGPLPKGRGAATHAIVAIDYFTKWIEVEALSRITEKKTTDFVWRNLVCRYGIPYALVTDNGRQFDNHSFRDFCQNLGIELKYCSPAHPQSNGQVEAANKTVKRLLKTRLGAKKGAWVDELSGVLWAYRTTHKTATGETPFALAFGHEAVVP 769 +H+G ++ K+ ++ Y+WP M +D +C C+ + +P P+ + P F ++ +D IGPLP G H +V +D T + + T K T + N + IP L +D G F + F + + I+L++ +P HPQS+G+VE N +K+LL L + W + +S V A TH +T TP L FG + +P Sbjct: 817 SHAGREAVLLKI-QENYWWPKMKKDISSFLSTCNVCKMVNPLNLKPISPQAIVHPTKP--FDKFYMDYIGPLPPSEGYV-HVLVVVDAATGFTWLYPTKAQTSKATIKVL--NHLTGLAIPKVLHSDQGSAFTSEEFAQWAKERNIQLEFSTPYHPQSSGKVERKNSEIKKLLTKLLVGRPLKWYNLISSVQLALNNTHVVSTKYTPHQLMFGIDCNLP 1029 HSP 2 Score: 20.7866 bits (42), Expect = 4.280e-21 Identity = 7/10 (70.00%), Postives = 8/10 (80.00%), Query Frame = 1 Query: 112 LRKSFWREVP 141 LRK WRE+P Sbjct: 792 LRKDGWREIP 801
BLAST of CX047192 vs. ExPASy Swiss-Prot
Match: POL_SFV3L (Pro-Pol polyprotein OS=Simian foamy virus type 3 (strain LK3) GN=pol PE=3 SV=2) HSP 1 Score: 100.908 bits (250), Expect = 1.038e-20 Identity = 64/216 (29.63%), Postives = 103/216 (47.69%), Query Frame = 2 Query: 122 HSGGRSLAHKVLRQGYFWPTMHQDAQRKTRSCASCQSFANFSNQPPEKLTSMASPWLFAQWGIDLIGPLPKGRGAATHAIVAIDYFTKWIEVEALSRITEKKTTDFVWRNLVCRYGIPYALVTDNGRQFDNHSFRDFCQNLGIELKYCSPAHPQSNGQVEAANKTVKRLLKTRLGAKKGAWVDELSGVLWAYRTTHKTATGETPFALAFGHEAVVP 769 H+G S KV + Y+WP + +D + R C C + P L F ++ ID IGPLP G H +V +D T ++ + + T + N++ +P + +D G F + +F D+ +N GI+L++ +P HPQS+G+VE N +KRLL L + W D L V A ++ ++ TP L FG ++ P Sbjct: 816 HTGRDSTFLKVSSK-YWWPNLRKDVVKVIRQCKQCLVTNAATLAAPPILRPERPVKPFDKFFIDYIGPLPPSNGYL-HVLVVVDSMTGFVWLYPTKAPSTSATVKAL--NMLTSIAVPKVIHSDQGAAFTSATFADWAKNKGIQLEFSTPYHPQSSGKVERKNSDIKRLLTKLLVGRPAKWYDLLPVVQLALNNSYSPSSKYTPHQLLFGIDSNTP 1027
BLAST of CX047192 vs. ExPASy Swiss-Prot
Match: RTF23_SCHPO (Retrotransposable element Tf2 155 kDa protein type 3 OS=Schizosaccharomyces pombe GN=Tf2-11 PE=4 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 2.557e-19 Identity = 68/250 (27.20%), Postives = 120/250 (48.00%), Query Frame = 2 Query: 86 VLREVHEGICGNHSGGRSLAHKVLRQGYFWPTMHQDAQRKTRSCASCQSFANFSNQPPEKLTSMAS---PWLFAQWGIDLIGPLPKGRGAATHAIVAIDYFTKW-IEVEALSRITEKKTTDFVWRNLVCRYGIPYALVTDNGRQFDNHSFRDFCQNLGIELKYCSPAHPQSNGQVEAANKTVKRLLKTRLGAKKGAWVDELSGVLWAYRTTHKTATGETPFALAFGHE-AVVPAEVGTTTHRTDYFNEQE 820 ++++ HE H G L + +LR+ + W + + Q ++C +CQ + +++P L + PW +D I LP+ G V +D F+K I V IT ++T + ++ +G P ++ DN F + +++DF +K+ P PQ++GQ E N+TV++LL+ WVD +S V +Y +AT TPF + + A+ P E+ + + +TD N QE Sbjct: 915 IIKKYHEEGKLIHPGIELLTNIILRR-FTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPW--ESLSMDFITALPESSGYNA-LFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLELPSFSDKTDE-NSQE 1159
BLAST of CX047192 vs. ExPASy Swiss-Prot
Match: RTF22_SCHPO (Retrotransposable element Tf2 155 kDa protein type 2 OS=Schizosaccharomyces pombe GN=Tf2-7 PE=2 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 2.557e-19 Identity = 68/250 (27.20%), Postives = 120/250 (48.00%), Query Frame = 2 Query: 86 VLREVHEGICGNHSGGRSLAHKVLRQGYFWPTMHQDAQRKTRSCASCQSFANFSNQPPEKLTSMAS---PWLFAQWGIDLIGPLPKGRGAATHAIVAIDYFTKW-IEVEALSRITEKKTTDFVWRNLVCRYGIPYALVTDNGRQFDNHSFRDFCQNLGIELKYCSPAHPQSNGQVEAANKTVKRLLKTRLGAKKGAWVDELSGVLWAYRTTHKTATGETPFALAFGHE-AVVPAEVGTTTHRTDYFNEQE 820 ++++ HE H G L + +LR+ + W + + Q ++C +CQ + +++P L + PW +D I LP+ G V +D F+K I V IT ++T + ++ +G P ++ DN F + +++DF +K+ P PQ++GQ E N+TV++LL+ WVD +S V +Y +AT TPF + + A+ P E+ + + +TD N QE Sbjct: 915 IIKKYHEEGKLIHPGIELLTNIILRR-FTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPW--ESLSMDFITALPESSGYNA-LFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLELPSFSDKTDE-NSQE 1159
BLAST of CX047192 vs. ExPASy Swiss-Prot
Match: RTF21_SCHPO (Retrotransposable element Tf2 155 kDa protein type 1 OS=Schizosaccharomyces pombe GN=Tf2-1 PE=2 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 2.557e-19 Identity = 68/250 (27.20%), Postives = 120/250 (48.00%), Query Frame = 2 Query: 86 VLREVHEGICGNHSGGRSLAHKVLRQGYFWPTMHQDAQRKTRSCASCQSFANFSNQPPEKLTSMAS---PWLFAQWGIDLIGPLPKGRGAATHAIVAIDYFTKW-IEVEALSRITEKKTTDFVWRNLVCRYGIPYALVTDNGRQFDNHSFRDFCQNLGIELKYCSPAHPQSNGQVEAANKTVKRLLKTRLGAKKGAWVDELSGVLWAYRTTHKTATGETPFALAFGHE-AVVPAEVGTTTHRTDYFNEQE 820 ++++ HE H G L + +LR+ + W + + Q ++C +CQ + +++P L + PW +D I LP+ G V +D F+K I V IT ++T + ++ +G P ++ DN F + +++DF +K+ P PQ++GQ E N+TV++LL+ WVD +S V +Y +AT TPF + + A+ P E+ + + +TD N QE Sbjct: 915 IIKKYHEEGKLIHPGIELLTNIILRR-FTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPW--ESLSMDFITALPESSGYNA-LFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLELPSFSDKTDE-NSQE 1159
BLAST of CX047192 vs. ExPASy Swiss-Prot
Match: GIN1_HUMAN (Gypsy retrotransposon integrase-like protein 1 OS=Homo sapiens GN=GIN1 PE=2 SV=2) HSP 1 Score: 93.2041 bits (230), Expect = 2.165e-18 Identity = 66/249 (26.51%), Postives = 108/249 (43.37%), Query Frame = 2 Query: 62 LDDDDADYVLREVHEGICGNHSG-GRSLAHKVLRQGYFWPTMHQDAQRKTRSCASCQSFAN-FSNQPPEKLTSMASPWLFAQWGIDLIGPLPKGRGAATHAIVAIDYFTKWIEVEALSRITEKKTTDFVWRNLVCRYGIPYALVTDNGRQFDNHSFRDFCQNLGIELKYCSPAHPQSNGQVEAANKTVKRLLKTRLGAKKGAWVDELSGVLWAYRTTHKTATGETPFALAFGHEAVVPAEVGTTTHRTD 802 + +++ VLRE HE G H G R+L ++ Y+W ++ DA++ +C CQ N P + L + +PW +DL+GP + +AI+ D FTKWI + L ++ + + + N+ YG P ++ D +F + + GI+ S N +E+ T+K L W D LS V +A+ TH T TP+ F +P E + H D Sbjct: 65 VSEEEKKKVLRECHENDSGAHHGISRTLT--LVESNYYWTSVTNDAKQWVYACQHCQVAKNTVIVAPKQHLLKVENPWSLVT--VDLMGPFHTSNRSHVYAIIMTDLFTKWIVILPLCDVSASEVSKAII-NIFFLYGPPQKIIMDQRDEFIQQINIELYRLFGIKQIVISHTSGTVN-PMESTPNTIKAFLSKHCADHPNNWDDHLSAVSFAFNVTHLEPTKNTPYFQMFSRNPYMP-ETSDSLHEVD 306
BLAST of CX047192 vs. ExPASy Swiss-Prot
Match: POL_SFVCP (Pro-Pol polyprotein OS=Simian foamy virus (isolate chimpanzee) GN=pol PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 3.692e-18 Identity = 63/217 (29.03%), Postives = 101/217 (46.54%), Query Frame = 2 Query: 122 HSGGRSLAHKVLRQGYFWPTMHQDAQRKTRSCASCQSFANFSNQPPEKLTSMASPWL-FAQWGIDLIGPLPKGRGAATHAIVAIDYFTKWIEVEALSRITEKKTTDFVWRNLVCRYGIPYALVTDNGRQFDNHSFRDFCQNLGIELKYCSPAHPQSNGQVEAANKTVKRLLKTRLGAKKGAWVDELSGVLWAYRTTHKTATGETPFALAFGHEAVVP 769 H+G + K+ Y+WP M +D ++ C C N SN+ + P F ++ ID IGPLP +G + +V +D T + + + T + N++ IP + +D G F + +F ++ + GI L++ +P HPQS+G+VE N +KRLL L + W D L V A T+ TP L FG ++ P Sbjct: 817 HTGREATLLKIANL-YWWPNMRKDVVKQLGRCKQCL-ITNASNKTSGPILRPDRPQKPFDKFFIDYIGPLPPSQGYL-YVLVIVDGMTGFTWLYPTKAPSTSATVKSL--NVLTSIAIPKVIHSDQGAAFTSSTFAEWAKERGIHLEFSTPYHPQSSGKVERKNSDIKRLLTKLLVGRPTKWYDLLPVVQLALNNTYSPVLKYTPHQLLFGIDSNTP 1028
BLAST of CX047192 vs. ExPASy Swiss-Prot
Match: POL4_DROME (Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster GN=POL PE=4 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 3.692e-18 Identity = 56/242 (23.14%), Postives = 105/242 (43.39%), Query Frame = 2 Query: 47 PFLRCLDDDDADYVLREVHEG-ICGNHSGGRSLAHKVLRQGYFWPTMHQDAQRKTRSCASCQSFANFSNQPPEKLTSMASPWLFAQWGIDLIGPLPKGRGAATHAIVAIDYFTKWIEVEALSRITEKKTTDFVWRNLVCRYGIPYALVTDNGRQFDNHSFRDFCQNLGIELKYCSPAHPQSNGQVEAANKTVKRLLKTRLGAKKGAWVDELSGVLWAYRTTHKTATGETPFALAFGHEAVVP 769 P + ++ + + +L +H+ I G H+G KV R Y+W M + + R C CQ + + F + +D IGPLPK +A+ I TK++ ++ + K ++ + + +YG +TD G ++ N D C+ L I+ + H Q+ G VE +++T+ +++ + K W L ++ + TT P+ L FG + +P Sbjct: 883 PVTQINNEKEKEAILSTLHDDPIQGGHTGITKTLAKVKRH-YYWKNMSKYIKEYVRKCQKCQKAKTTKHTKTPMTITETPEHAFDRVVVDTIGPLPKSENGNEYAVTLICDLTKYLVAIPIANKSAKTVAKAIFESFILKYGPMKTFITDMGTEYKNSIITDLCKYLKIKNITSTAHHHQTVGVVERSHRTLNEYIRSYISTDKTDWDVWLQYFVYCFNTTQSMVHNYCPYELVFGRTSNLP 1123
BLAST of CX047192 vs. ExPASy Swiss-Prot
Match: GIN1_PONAB (Gypsy retrotransposon integrase-like protein 1 OS=Pongo abelii GN=GIN1 PE=2 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 8.225e-18 Identity = 64/249 (25.70%), Postives = 106/249 (42.57%), Query Frame = 2 Query: 62 LDDDDADYVLREVHEGICGNHSG-GRSLAHKVLRQGYFWPTMHQDAQRKTRSCASCQSFAN-FSNQPPEKLTSMASPWLFAQWGIDLIGPLPKGRGAATHAIVAIDYFTKWIEVEALSRITEKKTTDFVWRNLVCRYGIPYALVTDNGRQFDNHSFRDFCQNLGIELKYCSPAHPQSNGQVEAANKTVKRLLKTRLGAKKGAWVDELSGVLWAYRTTHKTATGETPFALAFGHEAVVPAEVGTTTHRTD 802 + +++ VLRE HE G H G R+L ++ Y+W ++ D ++ +C CQ N P + L + +PW +DL+GP + +A++ D FTKWI + L ++ + + + N+ YG P ++ D +F + + GI+ S N E+ T+K L W D LS V +A+ TH T TP+ F +P E + H D Sbjct: 65 VSEEEKKKVLRECHENDSGAHHGISRTLT--LVESNYYWTSVTNDVKQWVYACQHCQVAKNTVIVAPKQHLLKVENPWSLVT--VDLMGPFHTSNRSHVYAVIMTDLFTKWIVILPLCDVSASEVSKAII-NIFFLYGPPQKIIMDQRDEFIQQINIELYRLFGIKQIVISHTSGSVN-PTESTPNTIKAFLSKHCADHPNNWDDHLSAVSFAFNVTHLEPTKNTPYFQMFSRNPYMP-ETSDSLHEVD 306 The following BLAST results are available for this feature:
BLAST of CX047192 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 31
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX047192 ID=CX047192; Name=CX047192; organism=Citrus sinensis; type=EST; length=900bpback to top |