CX047100

Overview
NameCX047100
Unique NameCX047100
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length830
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1652 contig Csv1_Contig1652:2037..2866. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX047100 vs. ExPASy Swiss-Prot
Match: RK16_VIGUN (50S ribosomal protein L16, chloroplastic (Fragment) OS=Vigna unguiculata GN=rpl16 PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.835e-45
Identity = 85/90 (94.44%), Postives = 90/90 (100.00%), Query Frame = 3
Query:  561 TINYNPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKG 830
            TINYNP+RTRFRKQHRGRMKGISYRGN+ICFGRYALQALEPAWITSRQIEAGRRAM+RNVRRGG+IWVRIFPDKPVT+RPTETRMGSGKG
Sbjct:    1 TINYNPQRTRFRKQHRGRMKGISYRGNNICFGRYALQALEPAWITSRQIEAGRRAMSRNVRRGGQIWVRIFPDKPVTVRPTETRMGSGKG 90          
BLAST of CX047100 vs. ExPASy Swiss-Prot
Match: RK16_CITSI (50S ribosomal protein L16, chloroplastic OS=Citrus sinensis GN=rpl16 PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.835e-45
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 3
Query:  573 NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKG 830
            NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKG
Sbjct:    4 NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKG 89          
BLAST of CX047100 vs. ExPASy Swiss-Prot
Match: RK16_HELAN (50S ribosomal protein L16, chloroplastic OS=Helianthus annuus GN=rpl16 PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 3.461e-44
Identity = 83/89 (93.26%), Postives = 86/89 (96.63%), Query Frame = 3
Query:  564 INYNPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKG 830
            +NYNPKRTRFRKQHRGRMKGISYRGN ICFG+YALQALEPAWITSRQIEAGRRAMTRN RRGGKIWVRIFPDKPVT+RP ETRMGSGKG
Sbjct:    1 MNYNPKRTRFRKQHRGRMKGISYRGNTICFGKYALQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTVRPAETRMGSGKG 89          
BLAST of CX047100 vs. ExPASy Swiss-Prot
Match: RK16_GUIAB (50S ribosomal protein L16, chloroplastic OS=Guizotia abyssinica GN=rpl16 PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 3.461e-44
Identity = 83/89 (93.26%), Postives = 86/89 (96.63%), Query Frame = 3
Query:  564 INYNPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKG 830
            +NYNPKRTRFRKQHRGRMKGISYRGN ICFG+YALQALEPAWITSRQIEAGRRAMTRN RRGGKIWVRIFPDKPVT+RP ETRMGSGKG
Sbjct:    1 MNYNPKRTRFRKQHRGRMKGISYRGNTICFGKYALQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTVRPAETRMGSGKG 89          
BLAST of CX047100 vs. ExPASy Swiss-Prot
Match: RK16_PHAAN (50S ribosomal protein L16, chloroplastic OS=Phaseolus angularis GN=rpl16 PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.007e-43
Identity = 82/86 (95.35%), Postives = 86/86 (100.00%), Query Frame = 3
Query:  573 NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKG 830
            NP+RTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAM+RNVRRGG+IWVRIFPDKPVT+RPTETRMGSGKG
Sbjct:    4 NPQRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMSRNVRRGGQIWVRIFPDKPVTVRPTETRMGSGKG 89          
BLAST of CX047100 vs. ExPASy Swiss-Prot
Match: RK16_VITVI (50S ribosomal protein L16, chloroplastic OS=Vitis vinifera GN=rpl16 PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.315e-43
Identity = 83/86 (96.51%), Postives = 85/86 (98.84%), Query Frame = 3
Query:  573 NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKG 830
            +PKRTRFRKQHRGRMKGISYRGN ICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVT+RPTETRMGSGKG
Sbjct:    3 SPKRTRFRKQHRGRMKGISYRGNRICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTVRPTETRMGSGKG 88          
BLAST of CX047100 vs. ExPASy Swiss-Prot
Match: RK16_GOSBA (50S ribosomal protein L16, chloroplastic OS=Gossypium barbadense GN=rpl16 PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.315e-43
Identity = 83/86 (96.51%), Postives = 85/86 (98.84%), Query Frame = 3
Query:  573 NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKG 830
            +PKRTRFRKQHRGRMKGISYRGN ICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVT+RPTETRMGSGKG
Sbjct:    3 SPKRTRFRKQHRGRMKGISYRGNRICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTVRPTETRMGSGKG 88          
BLAST of CX047100 vs. ExPASy Swiss-Prot
Match: RK16_MORIN (50S ribosomal protein L16, chloroplastic OS=Morus indica GN=rpl16 PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.243e-43
Identity = 81/86 (94.19%), Postives = 84/86 (97.67%), Query Frame = 3
Query:  573 NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKG 830
            +PKRTRFRK HRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRN RRGGKIWVRIFPDKP+T+RPTETRMGSGKG
Sbjct:    3 SPKRTRFRKHHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPITVRPTETRMGSGKG 88          
BLAST of CX047100 vs. ExPASy Swiss-Prot
Match: RK16_ILLOL (50S ribosomal protein L16, chloroplastic OS=Illicium oligandrum GN=rpl16 PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.930e-43
Identity = 81/86 (94.19%), Postives = 84/86 (97.67%), Query Frame = 3
Query:  573 NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKG 830
            NPKRTRFRKQHRGRMKG+SYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTR  RRGG+IWVRIFPDKPVT+RPTETRMGSGKG
Sbjct:    4 NPKRTRFRKQHRGRMKGVSYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRYARRGGRIWVRIFPDKPVTVRPTETRMGSGKG 89          
BLAST of CX047100 vs. ExPASy Swiss-Prot
Match: RK16_EUCGG (50S ribosomal protein L16, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=rpl16 PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.930e-43
Identity = 82/86 (95.35%), Postives = 85/86 (98.84%), Query Frame = 3
Query:  573 NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKG 830
            +PKRTRFRKQHRGRMKGISYRGN ICFG+YALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVT+RPTETRMGSGKG
Sbjct:    3 SPKRTRFRKQHRGRMKGISYRGNRICFGKYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTVRPTETRMGSGKG 88          
The following BLAST results are available for this feature:
BLAST of CX047100 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK16_VIGUN1.835e-4594.4450S ribosomal protein L16, chloroplastic (Fragment... [more]
RK16_CITSI1.835e-45100.0050S ribosomal protein L16, chloroplastic OS=Citrus... [more]
RK16_HELAN3.461e-4493.2650S ribosomal protein L16, chloroplastic OS=Helian... [more]
RK16_GUIAB3.461e-4493.2650S ribosomal protein L16, chloroplastic OS=Guizot... [more]
RK16_PHAAN1.007e-4395.3550S ribosomal protein L16, chloroplastic OS=Phaseo... [more]
RK16_VITVI1.315e-4396.5150S ribosomal protein L16, chloroplastic OS=Vitis ... [more]
RK16_GOSBA1.315e-4396.5150S ribosomal protein L16, chloroplastic OS=Gossyp... [more]
RK16_MORIN2.243e-4394.1950S ribosomal protein L16, chloroplastic OS=Morus ... [more]
RK16_ILLOL2.930e-4394.1950S ribosomal protein L16, chloroplastic OS=Illici... [more]
RK16_EUCGG2.930e-4395.3550S ribosomal protein L16, chloroplastic OS=Eucaly... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_12B05_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-12B05-C9-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047100 ID=CX047100; Name=CX047100; organism=Citrus sinensis; type=EST; length=830bp
CTCCGTTGGAGAATTCAGACCTAACCATTAATCGAGAAGCAATGGGAACG
ACGGAACCCGTGAATAAAGAAAAAGAAGATTCTATTGGAAATGAATCTTA
ATGATTTATTGGGTGGGATGGCGAAACGAACCCAGGAACTAAACTATTCT
TTTATTCGTAGAGGTCATGAACTAACCCTACAACTGAAATAGATATTGAA
AGAGTAAATATTCGCCCGCGAAAGGTTTATTTTTTGATTTTATTGGATTG
ATTCATTTTGCTCGATCCGATATGGTAAAGGGCAAAACAAAATAAAGATT
TGTTATAACGATAAAAAAAAAAAGACATTGAGATTATCTATAAATAGAAC
ATAAATGTTTCAATTCTATATCTAAACATGATATACAAATTTAGAATAGA
TTAATTAGATGAACTTTCAAAAAATCCTATGCTTCAGTATATTATTCATT
AAATTCCCCTATATCTTGATAAAATCGTTTTTAGTCCTTTCATTCGCGAG
GAGCTGGATGAGAAGAAACTCTCATGTCCAGTTCTGTAGTAGAGATGGCA
TTGAGAAAGAACCATCAATTATAACCCCAAAAGAACAAGATTCCGTAAAC
AACATAGAGGAAGAATGAAAGGGATATCTTATCGAGGTAATCATATTTGT
TTCGGCAGATATGCTCTTCAAGCACTTGAACCCGCTTGGATCACATCTAG
ACAAATCGAAGCGGGGCGCCGCGCAATGACACGAAATGTACGGCGCGGTG
GAAAAATATGGGTACGTATCTTTCCAGACAAACCCGTTACACTAAGACCC
ACGGAAACCCGTATGGGGTCCGGTAAAGGA
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