CX047100
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX047100 vs. ExPASy Swiss-Prot
Match: RK16_VIGUN (50S ribosomal protein L16, chloroplastic (Fragment) OS=Vigna unguiculata GN=rpl16 PE=3 SV=1) HSP 1 Score: 182.956 bits (463), Expect = 1.835e-45 Identity = 85/90 (94.44%), Postives = 90/90 (100.00%), Query Frame = 3 Query: 561 TINYNPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKG 830 TINYNP+RTRFRKQHRGRMKGISYRGN+ICFGRYALQALEPAWITSRQIEAGRRAM+RNVRRGG+IWVRIFPDKPVT+RPTETRMGSGKG Sbjct: 1 TINYNPQRTRFRKQHRGRMKGISYRGNNICFGRYALQALEPAWITSRQIEAGRRAMSRNVRRGGQIWVRIFPDKPVTVRPTETRMGSGKG 90
BLAST of CX047100 vs. ExPASy Swiss-Prot
Match: RK16_CITSI (50S ribosomal protein L16, chloroplastic OS=Citrus sinensis GN=rpl16 PE=3 SV=1) HSP 1 Score: 182.956 bits (463), Expect = 1.835e-45 Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 3 Query: 573 NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKG 830 NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKG Sbjct: 4 NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKG 89
BLAST of CX047100 vs. ExPASy Swiss-Prot
Match: RK16_HELAN (50S ribosomal protein L16, chloroplastic OS=Helianthus annuus GN=rpl16 PE=3 SV=1) HSP 1 Score: 178.718 bits (452), Expect = 3.461e-44 Identity = 83/89 (93.26%), Postives = 86/89 (96.63%), Query Frame = 3 Query: 564 INYNPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKG 830 +NYNPKRTRFRKQHRGRMKGISYRGN ICFG+YALQALEPAWITSRQIEAGRRAMTRN RRGGKIWVRIFPDKPVT+RP ETRMGSGKG Sbjct: 1 MNYNPKRTRFRKQHRGRMKGISYRGNTICFGKYALQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTVRPAETRMGSGKG 89
BLAST of CX047100 vs. ExPASy Swiss-Prot
Match: RK16_GUIAB (50S ribosomal protein L16, chloroplastic OS=Guizotia abyssinica GN=rpl16 PE=3 SV=1) HSP 1 Score: 178.718 bits (452), Expect = 3.461e-44 Identity = 83/89 (93.26%), Postives = 86/89 (96.63%), Query Frame = 3 Query: 564 INYNPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKG 830 +NYNPKRTRFRKQHRGRMKGISYRGN ICFG+YALQALEPAWITSRQIEAGRRAMTRN RRGGKIWVRIFPDKPVT+RP ETRMGSGKG Sbjct: 1 MNYNPKRTRFRKQHRGRMKGISYRGNTICFGKYALQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTVRPAETRMGSGKG 89
BLAST of CX047100 vs. ExPASy Swiss-Prot
Match: RK16_PHAAN (50S ribosomal protein L16, chloroplastic OS=Phaseolus angularis GN=rpl16 PE=3 SV=1) HSP 1 Score: 177.178 bits (448), Expect = 1.007e-43 Identity = 82/86 (95.35%), Postives = 86/86 (100.00%), Query Frame = 3 Query: 573 NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKG 830 NP+RTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAM+RNVRRGG+IWVRIFPDKPVT+RPTETRMGSGKG Sbjct: 4 NPQRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMSRNVRRGGQIWVRIFPDKPVTVRPTETRMGSGKG 89
BLAST of CX047100 vs. ExPASy Swiss-Prot
Match: RK16_VITVI (50S ribosomal protein L16, chloroplastic OS=Vitis vinifera GN=rpl16 PE=3 SV=1) HSP 1 Score: 176.792 bits (447), Expect = 1.315e-43 Identity = 83/86 (96.51%), Postives = 85/86 (98.84%), Query Frame = 3 Query: 573 NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKG 830 +PKRTRFRKQHRGRMKGISYRGN ICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVT+RPTETRMGSGKG Sbjct: 3 SPKRTRFRKQHRGRMKGISYRGNRICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTVRPTETRMGSGKG 88
BLAST of CX047100 vs. ExPASy Swiss-Prot
Match: RK16_GOSBA (50S ribosomal protein L16, chloroplastic OS=Gossypium barbadense GN=rpl16 PE=3 SV=1) HSP 1 Score: 176.792 bits (447), Expect = 1.315e-43 Identity = 83/86 (96.51%), Postives = 85/86 (98.84%), Query Frame = 3 Query: 573 NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKG 830 +PKRTRFRKQHRGRMKGISYRGN ICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVT+RPTETRMGSGKG Sbjct: 3 SPKRTRFRKQHRGRMKGISYRGNRICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTVRPTETRMGSGKG 88
BLAST of CX047100 vs. ExPASy Swiss-Prot
Match: RK16_MORIN (50S ribosomal protein L16, chloroplastic OS=Morus indica GN=rpl16 PE=3 SV=1) HSP 1 Score: 176.022 bits (445), Expect = 2.243e-43 Identity = 81/86 (94.19%), Postives = 84/86 (97.67%), Query Frame = 3 Query: 573 NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKG 830 +PKRTRFRK HRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRN RRGGKIWVRIFPDKP+T+RPTETRMGSGKG Sbjct: 3 SPKRTRFRKHHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPITVRPTETRMGSGKG 88
BLAST of CX047100 vs. ExPASy Swiss-Prot
Match: RK16_ILLOL (50S ribosomal protein L16, chloroplastic OS=Illicium oligandrum GN=rpl16 PE=3 SV=1) HSP 1 Score: 175.637 bits (444), Expect = 2.930e-43 Identity = 81/86 (94.19%), Postives = 84/86 (97.67%), Query Frame = 3 Query: 573 NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKG 830 NPKRTRFRKQHRGRMKG+SYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTR RRGG+IWVRIFPDKPVT+RPTETRMGSGKG Sbjct: 4 NPKRTRFRKQHRGRMKGVSYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRYARRGGRIWVRIFPDKPVTVRPTETRMGSGKG 89
BLAST of CX047100 vs. ExPASy Swiss-Prot
Match: RK16_EUCGG (50S ribosomal protein L16, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=rpl16 PE=3 SV=1) HSP 1 Score: 175.637 bits (444), Expect = 2.930e-43 Identity = 82/86 (95.35%), Postives = 85/86 (98.84%), Query Frame = 3 Query: 573 NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKG 830 +PKRTRFRKQHRGRMKGISYRGN ICFG+YALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVT+RPTETRMGSGKG Sbjct: 3 SPKRTRFRKQHRGRMKGISYRGNRICFGKYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTVRPTETRMGSGKG 88 The following BLAST results are available for this feature:
BLAST of CX047100 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX047100 ID=CX047100; Name=CX047100; organism=Citrus sinensis; type=EST; length=830bpback to top |