CX046903

Overview
NameCX046903
Unique NameCX046903
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length782
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX046903_ssr9 microsatellite CX046903_ssr9:9..20. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3406 contig Csv1_Contig3406:9..790. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX046903 vs. ExPASy Swiss-Prot
Match: PEL1_ARATH (Probable pectate lyase 1 OS=Arabidopsis thaliana GN=At1g04680 PE=2 SV=2)

HSP 1 Score: 322.398 bits (825), Expect = 1.745e-87
Identity = 147/167 (88.02%), Postives = 158/167 (94.61%), Query Frame = 3
Query:  294 SKHAVDNPDEIA----SMVEMSTRNSTERRKLGYFSCGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGGCITIQFVTNVIIHGLHVHDCKP 782
            ++HAV NPDE+A    ++ EMS RN TERRKLGYF+CGTGNPIDDCWRCD NWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDD+PVNP+PGTLRHAVIQD+PLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGGCITIQFVTNVI+HGLH+HDCKP
Sbjct:   41 NQHAVTNPDEVADEVLALTEMSVRNHTERRKLGYFTCGTGNPIDDCWRCDPNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDNPVNPRPGTLRHAVIQDRPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGGCITIQFVTNVIVHGLHIHDCKP 207          
BLAST of CX046903 vs. ExPASy Swiss-Prot
Match: PEL15_ARATH (Probable pectate lyase 15 OS=Arabidopsis thaliana GN=At4g13710 PE=2 SV=1)

HSP 1 Score: 315.464 bits (807), Expect = 2.134e-85
Identity = 158/246 (64.23%), Postives = 190/246 (77.24%), Query Frame = 3
Query:  126 TQRGICLCFAVVLMLFVSVLASVRNEQDVSVSRKMKAE---SSMNSTMAAKAEVVAEALS-------------------KHAV-DNPD----EIASMVEMSTRNSTERRKLGYFSCGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGGCITIQFVTNVIIHGLHVHDCKP 782
            +Q+ I +C AV+++L  ++ A +    ++S+SRK+K E   SS +STMAA  ++  E                      +HAV D+PD    E+A +V+MS +N T RRKLG+FSCGTGNPIDDCWRCD NWHKNRKRLADCGIGFGRNAIGGRDGRFY+VTDP D+D VNPKPGTLRHAVIQ++PLWIVFKRDMVI+LKQELI+NSFKTID RG+NVHIANG CITIQF+TNVIIHGLH+HDCKP
Sbjct:    5 SQKLISVCVAVLVVL--ALTAMIFRNSEISLSRKLKTEVIQSSNSSTMAAIRKLKTEEFQSLNSSTMAATRLDGEPQQQQHAVADDPDMVADEVAKLVQMSEQNRTARRKLGFFSCGTGNPIDDCWRCDRNWHKNRKRLADCGIGFGRNAIGGRDGRFYIVTDPTDEDVVNPKPGTLRHAVIQEEPLWIVFKRDMVIELKQELIMNSFKTIDARGSNVHIANGACITIQFITNVIIHGLHIHDCKP 248          
BLAST of CX046903 vs. ExPASy Swiss-Prot
Match: PEL8_ARATH (Probable pectate lyase 8 OS=Arabidopsis thaliana GN=At3g07010 PE=2 SV=1)

HSP 1 Score: 304.294 bits (778), Expect = 4.919e-82
Identity = 136/166 (81.93%), Postives = 150/166 (90.36%), Query Frame = 3
Query:  285 EALSKHAVDNPDEIASMVEMSTRNSTERRKLGYFSCGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGGCITIQFVTNVIIHGLHVHDCKP 782
            E   +HAV+NPDE+A+MV+MS RNSTERR+LGYFSC TGNPIDDCWRCD  W   RKRLADC IGFGRNAIGGRDGRFYVVTDP DDDPVNP PGTLRHAVIQD+PLWI+FKRDMVI LKQELI+NSFKTIDGRG NVHIANG C+TIQ+VTN+I+HG+HVHDCKP
Sbjct:   29 ETWHEHAVENPDEVAAMVDMSIRNSTERRRLGYFSCATGNPIDDCWRCDRKWQLRRKRLADCSIGFGRNAIGGRDGRFYVVTDPGDDDPVNPIPGTLRHAVIQDEPLWIIFKRDMVITLKQELIMNSFKTIDGRGVNVHIANGACLTIQYVTNIIVHGIHVHDCKP 194          
BLAST of CX046903 vs. ExPASy Swiss-Prot
Match: PEL20_ARATH (Probable pectate lyase 20 OS=Arabidopsis thaliana GN=At5g48900 PE=2 SV=1)

HSP 1 Score: 295.434 bits (755), Expect = 2.285e-79
Identity = 140/222 (63.06%), Postives = 166/222 (74.77%), Query Frame = 3
Query:  117 MAVTQRGICLCFAVVLMLFVSVLASVRNEQDVSVSRKMKAESSMNSTMAAKAEVVAEALSKHAVDNPDEIASMVEMSTRNSTERRKLGYFSCGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGGCITIQFVTNVIIHGLHVHDCKP 782
            MAVTQ  +    A++L +F + + S R+                            E   +HAV+NP+E+A+MV+MS RNST RR+LGYFSC TGNPIDDCWRCD  W   RK LA+C IGFGRNAIGGRDGR+YVV+DP DD+PVNPKPGTLRHAVIQ++PLWIVFKRDMVI LK+ELI+NSFKTIDGRG NVHIANG CITIQFVTN+IIHG+H+HDC+P
Sbjct:    1 MAVTQILVVFASALLLSMFFTGVDSTRSN---------------------------ETWHEHAVENPEEVAAMVDMSIRNSTARRRLGYFSCSTGNPIDDCWRCDRRWQSRRKHLANCAIGFGRNAIGGRDGRYYVVSDPNDDNPVNPKPGTLRHAVIQEEPLWIVFKRDMVITLKEELIMNSFKTIDGRGVNVHIANGACITIQFVTNIIIHGIHIHDCRP 195          
BLAST of CX046903 vs. ExPASy Swiss-Prot
Match: PEL10_ARATH (Probable pectate lyase 10 OS=Arabidopsis thaliana GN=At3g24670 PE=2 SV=2)

HSP 1 Score: 290.426 bits (742), Expect = 7.351e-78
Identity = 137/221 (61.99%), Postives = 169/221 (76.47%), Query Frame = 3
Query:  117 MAVTQRGICLCFAVVLMLFVSVLASVRNEQDVSVSRKMKAESSMNSTMAAKAEVVAEALSKHAVDNPDEIASMVEMSTRNSTERRKLGYFSCGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGGCITIQFVTNVIIHGLHVHDCK 779
            M +  R        +++L + + +S   ++    +  + + SS NS+ A K      A ++HAV NP+E+A+MV+M  +NSTERR+LG+FSC TGNPIDDCWRCD NWH  RKRLA+C IGFGRNAIGGRDGR+YVVTDP D D VNP+PGTLRHAVIQD+PLWIVFKRDMVI L QELI+NSFKTIDGRG NV IA G CITIQ+VTN+IIHG++VHDC+
Sbjct:    1 MVIFSRSFLALSTTLIILALCINSSTMAQE----TEDLNSHSSSNSSTANKLPNDDGAWNEHAVKNPEEVAAMVDMKIKNSTERRRLGFFSCATGNPIDDCWRCDRNWHLRRKRLANCAIGFGRNAIGGRDGRYYVVTDPSDHDAVNPRPGTLRHAVIQDRPLWIVFKRDMVITLTQELIMNSFKTIDGRGVNVAIAGGACITIQYVTNIIIHGINVHDCR 217          
BLAST of CX046903 vs. ExPASy Swiss-Prot
Match: PEL9_ARATH (Probable pectate lyase 9 OS=Arabidopsis thaliana GN=At3g24230 PE=2 SV=1)

HSP 1 Score: 284.263 bits (726), Expect = 5.268e-76
Identity = 140/220 (63.64%), Postives = 171/220 (77.73%), Query Frame = 3
Query:  147 CFAVVLMLFVSVLASVRN--EQDVSVSRKMKAESSMN---STMAAKAEVVAEALSKHAVDNPD----EIASMVEMSTRNSTERRKLGYFSCGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGGCITIQFVTNVIIHGLHVHDCK 779
            CF V+L +FV  + +  N    ++S SRK+K E S +   S M  + + V E L++HAV +PD    E+++++ MS +N T RRKLG+FSCG GN IDDCWRCD NW+KNRK LADCG+GFG  A GGR+G +YVVTD  DDD VNPKPGTLRHAVIQ +PLWI+FKRDMVI+LKQELI+NSFKTID RGANVHIANG CITIQ +TNVI+HGLH+HDCK
Sbjct:   12 CF-VLLFIFVGCVLTATNLRNNEISRSRKLKTEDSKSFNSSPMTTRLDGVVE-LNEHAVTDPDKVAHEVSNLIHMSEQNITARRKLGFFSCGNGNLIDDCWRCDRNWNKNRKHLADCGMGFGSKAFGGRNGSYYVVTDHSDDDVVNPKPGTLRHAVIQVEPLWIIFKRDMVIKLKQELIMNSFKTIDARGANVHIANGACITIQNITNVIVHGLHIHDCK 229          
BLAST of CX046903 vs. ExPASy Swiss-Prot
Match: PEL14_ARATH (Putative pectate lyase 14 OS=Arabidopsis thaliana GN=At4g13210 PE=2 SV=1)

HSP 1 Score: 280.796 bits (717), Expect = 5.824e-75
Identity = 125/162 (77.16%), Postives = 145/162 (89.51%), Query Frame = 3
Query:  297 KHAVDNPDEIASMVEMSTRNSTERRKLGYFS-CGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGGCITIQFVTNVIIHGLHVHDCK 779
            +HAV +P+EIA+MV+MS RNST RRKLG+FS C TGNPIDDCWRCD  WH+ RKRLADC IGFGRNA+GGRDGR+Y+VTDP D DPV PKPGTLR+AVIQD+PLWIVFKRDMVI L QELI+NSFKTIDGRG NVHIA G C+T+Q+VTN+IIHG+++HDCK
Sbjct:   34 EHAVKDPEEIAAMVDMSIRNSTYRRKLGFFSSCSTGNPIDDCWRCDKKWHRRRKRLADCAIGFGRNAVGGRDGRYYIVTDPSDHDPVTPKPGTLRYAVIQDEPLWIVFKRDMVITLSQELIMNSFKTIDGRGVNVHIAGGACLTVQYVTNIIIHGINIHDCK 195          
BLAST of CX046903 vs. ExPASy Swiss-Prot
Match: PEL22_ARATH (Probable pectate lyase 22 OS=Arabidopsis thaliana GN=At5g63180 PE=2 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 8.703e-71
Identity = 117/158 (74.05%), Postives = 137/158 (86.71%), Query Frame = 3
Query:  306 VDNPDEIASMVEMSTRNSTERRKLGYFSCGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGGCITIQFVTNVIIHGLHVHDCK 779
            V +P+ +   V      S  RRKLG+FSCG+GNPIDDCWRCD +W KNRKRLADCGIGFG+NAIGGRDG  YVVTDP +DDPVNP+PGTLR+AVIQD+PLWI+FKRDM IQLK+ELI+NSFKT+DGRGA+VHI+ G CITIQ+VTN+IIHGLH+HDCK
Sbjct:   50 VSDPELVVEEVHRKINESISRRKLGFFSCGSGNPIDDCWRCDKDWEKNRKRLADCGIGFGKNAIGGRDGEIYVVTDPGNDDPVNPRPGTLRYAVIQDEPLWIIFKRDMTIQLKEELIMNSFKTLDGRGASVHISGGPCITIQYVTNIIIHGLHIHDCK 207          
BLAST of CX046903 vs. ExPASy Swiss-Prot
Match: PEL18_ARATH (Probable pectate lyase 18 OS=Arabidopsis thaliana GN=At4g24780 PE=2 SV=2)

HSP 1 Score: 250.751 bits (639), Expect = 6.454e-66
Identity = 112/159 (70.44%), Postives = 135/159 (84.91%), Query Frame = 3
Query:  306 VDNPDEIASMVEMSTRNSTE-RRKLGYFSCGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGGCITIQFVTNVIIHGLHVHDCK 779
            V +P+ +   V  S   S   RRKLGY SC TGNPIDDCWRCD +W ++R+RLADC IGFG+NAIGGRDGR YVVTD  +D+PV+PKPGTLRHAV+QD+PLWI+F+RDM IQLK+ELI+NSFKTIDGRGA+VHI+ G CITIQ+VTN+IIHG+H+HDCK
Sbjct:   27 VPDPESVVEEVHKSINASVAGRRKLGYLSCTTGNPIDDCWRCDPHWEQHRQRLADCAIGFGKNAIGGRDGRIYVVTDSGNDNPVSPKPGTLRHAVVQDEPLWIIFQRDMTIQLKEELIMNSFKTIDGRGASVHISGGPCITIQYVTNIIIHGIHIHDCK 185          
BLAST of CX046903 vs. ExPASy Swiss-Prot
Match: PEL_ZINEL (Pectate lyase OS=Zinnia elegans PE=1 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 2.453e-65
Identity = 112/155 (72.26%), Postives = 129/155 (83.23%), Query Frame = 3
Query:  315 PDEIASMVEMSTRNSTERRKLGYFSCGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGGCITIQFVTNVIIHGLHVHDCK 779
            P  I + V  S   S  RR LGY SCGTGNPIDDCWRCD NW  NR+RLADC IGFG+NA+GGR+GR YVVTDP +DDPVNP PGTLR+AVIQD+PLWI+FKRDMVIQL+QEL++NS KTIDGRG NVHI NG CITI + +N+IIHG+H+HDCK
Sbjct:   26 PHAIVNEVHKSINAS--RRNLGYLSCGTGNPIDDCWRCDPNWANNRQRLADCAIGFGKNAMGGRNGRIYVVTDPGNDDPVNPVPGTLRYAVIQDEPLWIIFKRDMVIQLRQELVMNSHKTIDGRGVNVHIGNGPCITIHYASNIIIHGIHIHDCK 178          
The following BLAST results are available for this feature:
BLAST of CX046903 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
PEL1_ARATH1.745e-8788.02Probable pectate lyase 1 OS=Arabidopsis thaliana G... [more]
PEL15_ARATH2.134e-8564.23Probable pectate lyase 15 OS=Arabidopsis thaliana ... [more]
PEL8_ARATH4.919e-8281.93Probable pectate lyase 8 OS=Arabidopsis thaliana G... [more]
PEL20_ARATH2.285e-7963.06Probable pectate lyase 20 OS=Arabidopsis thaliana ... [more]
PEL10_ARATH7.351e-7861.99Probable pectate lyase 10 OS=Arabidopsis thaliana ... [more]
PEL9_ARATH5.268e-7663.64Probable pectate lyase 9 OS=Arabidopsis thaliana G... [more]
PEL14_ARATH5.824e-7577.16Putative pectate lyase 14 OS=Arabidopsis thaliana ... [more]
PEL22_ARATH8.703e-7174.05Probable pectate lyase 22 OS=Arabidopsis thaliana ... [more]
PEL18_ARATH6.454e-6670.44Probable pectate lyase 18 OS=Arabidopsis thaliana ... [more]
PEL_ZINEL2.453e-6572.26Pectate lyase OS=Zinnia elegans PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_10H09_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10H09-P17-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046903 ID=CX046903; Name=CX046903; organism=Citrus sinensis; type=EST; length=782bp
CACATTCTTCTCTCTCTCTCTTTCCTTCTCTGCTGCTTTTTCTTTCTTCC
TTTCTTTTTTTTCTCGGTTGTGTTTGGGAAGTGGGAAAGAGAGAGAAAAT
CAAAGAAAACAACGCAATGGCGGTGACGCAGCGTGGCATTTGTCTCTGTT
TTGCTGTCGTTTTAATGTTGTTCGTCAGCGTTCTGGCTTCTGTACGTAAC
GAGCAAGACGTCTCTGTTTCCAGGAAGATGAAGGCAGAGAGCTCAATGAA
CTCAACAATGGCGGCCAAGGCTGAAGTAGTAGCCGAGGCCTTGAGTAAAC
ATGCAGTTGATAACCCAGATGAAATTGCTTCAATGGTTGAGATGAGCACC
CGCAACAGCACTGAAAGGAGAAAGTTGGGGTACTTCTCCTGTGGTACTGG
TAATCCCATTGATGACTGCTGGCGCTGTGACGGCAACTGGCACAAGAACC
GCAAGCGTCTTGCAGACTGTGGGATTGGTTTTGGAAGAAATGCCATTGGT
GGCCGTGATGGTCGCTTCTATGTTGTCACTGACCCAAGGGATGATGACCC
TGTTAACCCCAAACCTGGAACTTTACGCCATGCTGTTATCCAGGATAAGC
CTCTCTGGATTGTTTTCAAGAGGGACATGGTGATTCAATTGAAACAGGAA
CTGATTGTCAATAGCTTCAAGACCATTGATGGTCGTGGGGCGAATGTGCA
CATTGCTAATGGAGGTTGCATCACTATCCAATTTGTGACCAATGTGATCA
TTCACGGTCTTCACGTTCATGACTGTAAACCC
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