CX046894

Overview
NameCX046894
Unique NameCX046894
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length845
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3812 contig Csv1_Contig3812:1..845. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX046894 vs. ExPASy Swiss-Prot
Match: DPOLL_MACFA (DNA polymerase lambda OS=Macaca fascicularis GN=POLL PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.791e-30
Identity = 74/217 (34.10%), Postives = 119/217 (54.84%), Query Frame = -1
Query:  264 RTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE-----------------------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 845
            R+L+D++++ SLT  Q +GLK+++D   R+PR E  ++E+ +QKA +     ++ +  GSYRRGKA+CGD+DV+I HPD +SH+G  S+ +  L++  FL +DL+    + +                       V P   +A  L+ +TG+   NR +R LA++KG  L +  L  A   +     +     L   TEK+VF  LG P+ EP ER+
Sbjct:  358 RSLEDIRSQASLTTQQAIGLKHYNDFLERMPREEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQQGFLTDDLVSQEENGQQQKYLGVCRLPGPGWRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHALSTAVVRNTHGCKMGPGRVLPTPTEKDVFRLLGLPYREPAERD 574          
BLAST of CX046894 vs. ExPASy Swiss-Prot
Match: DPOLL_HUMAN (DNA polymerase lambda OS=Homo sapiens GN=POLL PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.791e-30
Identity = 75/217 (34.56%), Postives = 118/217 (54.38%), Query Frame = -1
Query:  264 RTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE-----------------------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 845
            R+L+D++++ SLT  Q +GLK++ D   R+PR E  ++E+ +QKA +     ++ +  GSYRRGKA+CGD+DV+I HPD +SH+G  S+ +  L++  FL +DL+    + +                       V P   +A  L+ +TG+   NR +R LA++KG  L +  L  A   +     V     L   TEK+VF  LG P+ EP ER+
Sbjct:  358 RSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQEGFLTDDLVSQEENGQQQKYLGVCRLPGPGRRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHALSTAVVRNTHGCKVGPGRVLPTPTEKDVFRLLGLPYREPAERD 574          
BLAST of CX046894 vs. ExPASy Swiss-Prot
Match: DPOLL_RAT (DNA polymerase lambda OS=Rattus norvegicus GN=Poll PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.103e-29
Identity = 73/217 (33.64%), Postives = 117/217 (53.92%), Query Frame = -1
Query:  264 RTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE-----------------------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 845
            R+L+D++   SLT  Q +GLK++DD   R+PR E  ++E++++ + +   P ++ +  GS+RRGK +CGD+DV+I HPD +SH+G  S  +  L++  FL +DL+    + +                       V P   +A  L+ +TG+   NR +R LA++KG  L +  L  A   +     V A   L   TEK+VF  LG P+ EP ER+
Sbjct:  356 RSLEDIRGLASLTAQQAIGLKHYDDFLDRMPREEAAEIEQMVRVSAQAFNPGLLCVACGSFRRGKVTCGDVDVLITHPDGRSHQGIFSPLLDSLRQQGFLTDDLVSQEENGQQQKYLGVCRLPGAGQRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHALSAAVVRNSQGVKVGAGQVLPTPTEKDVFKLLGLPYREPAERD 572          
BLAST of CX046894 vs. ExPASy Swiss-Prot
Match: DPOLL_MOUSE (DNA polymerase lambda OS=Mus musculus GN=Poll PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.220e-28
Identity = 74/217 (34.10%), Postives = 115/217 (53.00%), Query Frame = -1
Query:  264 RTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE-----------------------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 845
            R L+DL++  SLT  Q +GLK++DD   R+PR E  ++E+ ++ + +   P ++ +  GSYRRGK +CGD+DV+I HPD +SH+G  S  +  L++  FL +DL+    + +                       V P   +A  L+ +TG+   NR +R LA++KG  L +  L  A   +     V     L   TEK+VF  LG P+ EP ER+
Sbjct:  356 RNLEDLQSLGSLTAQQAIGLKHYDDFLDRMPREEAAEIEQTVRISAQAFNPGLLCVACGSYRRGKMTCGDVDVLITHPDGRSHRGIFSCLLDSLRQQGFLTDDLVSQEENGQQQKYLGVCRLPGPGKRHRRLDIIVVPYCEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHALSAAVVRNSQGVKVGPGQVLPTPTEKDVFKHLGLPYREPAERD 572          
BLAST of CX046894 vs. ExPASy Swiss-Prot
Match: DPOLB_RAT (DNA polymerase beta OS=Rattus norvegicus GN=Polb PE=1 SV=4)

HSP 1 Score: 120.168 bits (300), Expect = 1.491e-26
Identity = 74/221 (33.48%), Postives = 125/221 (56.56%), Query Frame = -1
Query:  264 RTLDDL-KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDL------------IFSTHSEEVY----------PRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 845
            +TL+DL KNED L H QR+GLKYF+D + RIPR E+ QM+ ++    +++ PE I    GS+RRG  S GD+DV++ HP+  S        L + V++L++++F+ + L            + S + E  Y          P+D Y  G++ +TG+D+ N+ +R  A  KG+ +++  + P      G  GV A   L  D+E+++FD++ + + EP +R+
Sbjct:  120 KTLEDLRKNEDKLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKLDPEYIATVCGSFRRGAESSGDMDVLLTHPNFTSESSKQPKLLHRVVEQLQKVRFITDTLSKGETKFMGVCQLPSENDENEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPL-----GVTGV-AGEPLPVDSEQDIFDYIQWRYREPKDRS 334          
BLAST of CX046894 vs. ExPASy Swiss-Prot
Match: DPOLB_BOVIN (DNA polymerase beta OS=Bos taurus GN=POLB PE=2 SV=3)

HSP 1 Score: 120.168 bits (300), Expect = 1.491e-26
Identity = 75/221 (33.94%), Postives = 124/221 (56.11%), Query Frame = -1
Query:  264 RTLDDL-KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDL------------IFSTHSEEVY----------PRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 845
            +TL+DL KNED L H QR+GLKYF+D + RIPR E+ QM+ ++    ++V  E I    GS+RRG  S GD+DV++ HP   S        L + V++L++++F+ + L            + S + E+ Y          P+D Y  G++ +TG+D+ N+ +R  A  KG+ +++  + P      G  GV A   L  D+EK++FD++ + + EP +R+
Sbjct:  120 KTLEDLRKNEDKLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLSEVKKVDSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESAKQPKLLHRVVEQLQKVRFITDTLSKGETKFMGVCQLPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPL-----GVTGV-AGEPLPVDSEKDIFDYIQWKYREPKDRS 334          
BLAST of CX046894 vs. ExPASy Swiss-Prot
Match: DPOLB_XENLA (DNA polymerase beta OS=Xenopus laevis GN=polb PE=1 SV=3)

HSP 1 Score: 118.627 bits (296), Expect = 4.338e-26
Identity = 73/220 (33.18%), Postives = 119/220 (54.09%), Query Frame = -1
Query:  264 RTLDDLKN-EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDLI-----------FSTHSEEVY----------PRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 845
            +TLDDL+N E  L H Q++GLK+FDD + RIPR E+ QM+ ++      + PE I    GS+RRG  S GD+D+++ HPD  S        L + V+ L++  F+ + L+               S++ Y          P+D Y  G++ +TG+D+ N+ +R  A  KG+ L++  L P      G  G+ A   L  D+EK++FD++ + + EP +R+
Sbjct:  120 KTLDDLRNNEHKLNHHQKIGLKHFDDFEKRIPRKEMLQMQEIILDKVNNLDPEYIATVCGSFRRGAESSGDMDILLTHPDFTSESAKQPRLLHQVVQCLEDCNFITDTLVKGDTKFMGVCQLPCESDQDYPYRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRTHALEKGFTLNEYTLRPL-----GVTGI-AGEPLPIDSEKDIFDYIQWKYREPKDRS 333          
BLAST of CX046894 vs. ExPASy Swiss-Prot
Match: DPOLB_HUMAN (DNA polymerase beta OS=Homo sapiens GN=POLB PE=1 SV=3)

HSP 1 Score: 116.701 bits (291), Expect = 1.648e-25
Identity = 75/221 (33.94%), Postives = 122/221 (55.20%), Query Frame = -1
Query:  264 RTLDDL-KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHK----GFLSKYVKKLKEMKFLREDL------------IFSTHSEEVY----------PRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 845
            +TL+DL KNED L H QR+GLKYF D + RIPR E+ QM+ ++    ++V  E I    GS+RRG  S GD+DV++ HP   S        L + V++L+++ F+ + L            + S + E+ Y          P+D Y  G++ +TG+D+ N+ +R  A  KG+ +++  + P      G  GV A   L  D+EK++FD++ + + EP +R+
Sbjct:  120 KTLEDLRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQLPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPL-----GVTGV-AGEPLPVDSEKDIFDYIQWKYREPKDRS 334          
BLAST of CX046894 vs. ExPASy Swiss-Prot
Match: DPOLB_MOUSE (DNA polymerase beta OS=Mus musculus GN=Polb PE=2 SV=3)

HSP 1 Score: 115.161 bits (287), Expect = 4.796e-25
Identity = 73/221 (33.03%), Postives = 123/221 (55.66%), Query Frame = -1
Query:  264 RTLDDL-KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDL---------IFSTHSEE-------------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 845
            +TL+DL KNED L H QR+GLKYF+D + RIPR E+ QM+ ++    ++V  E I    GS+RRG  S GD+DV++ HP+  S        L + V++L+++ F+ + L         +    SE+             + P+D Y  G++ +TG+D+ N+ +R  A  KG+ +++  + P      G  GV A   L  D+E+++FD++ + + EP +R+
Sbjct:  120 KTLEDLRKNEDKLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEIKKVDSEYIATVCGSFRRGAESSGDMDVLLTHPNFTSESSKQPKLLHRVVEQLQKVHFITDTLSKGETKFMGVCQLPSEKDGKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPL-----GVTGV-AGEPLPVDSEQDIFDYIQWRYREPKDRS 334          
BLAST of CX046894 vs. ExPASy Swiss-Prot
Match: DPOLB_DANRE (DNA polymerase beta OS=Danio rerio GN=polb PE=2 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 4.060e-24
Identity = 73/223 (32.74%), Postives = 117/223 (52.47%), Query Frame = -1
Query:  264 RTLDDLKN-EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHK-----------------GFLSKYVKK-----------LKEMKFLREDLIFSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 845
            R L+DLK  E  L H Q++GLKYF++ + RIPR E+++ME L+ K  + V PE I    GSYRRG  S GD+D+++ HPD  S                   GF++  + K            KE +   E+ +       + P+D Y  G++ +TG+D+ N+ +R  A  KG+ L++  + P      G  GV A   L  D+EK++F+++ + + EP +R+
Sbjct:  119 RNLEDLKKIEHKLNHHQQIGLKYFEEFEKRIPRSEMQKMEALILKELDIVDPEYIGTICGSYRRGAESSGDIDILLTHPDFTSQSEKQPKLLHAVVDHLESIGFITDTLSKGDTKFMGVCQLQKEKEEEEEESLHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRTHALEKGFTLNEYTIRPL-----GVTGV-AGEPLLVDSEKDIFEYIQWKYREPKDRS 335          
The following BLAST results are available for this feature:
BLAST of CX046894 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
DPOLL_MACFA3.791e-3034.10DNA polymerase lambda OS=Macaca fascicularis GN=PO... [more]
DPOLL_HUMAN3.791e-3034.56DNA polymerase lambda OS=Homo sapiens GN=POLL PE=1... [more]
DPOLL_RAT1.103e-2933.64DNA polymerase lambda OS=Rattus norvegicus GN=Poll... [more]
DPOLL_MOUSE1.220e-2834.10DNA polymerase lambda OS=Mus musculus GN=Poll PE=2... [more]
DPOLB_RAT1.491e-2633.48DNA polymerase beta OS=Rattus norvegicus GN=Polb P... [more]
DPOLB_BOVIN1.491e-2633.94DNA polymerase beta OS=Bos taurus GN=POLB PE=2 SV=... [more]
DPOLB_XENLA4.338e-2633.18DNA polymerase beta OS=Xenopus laevis GN=polb PE=1... [more]
DPOLB_HUMAN1.648e-2533.94DNA polymerase beta OS=Homo sapiens GN=POLB PE=1 S... [more]
DPOLB_MOUSE4.796e-2533.03DNA polymerase beta OS=Mus musculus GN=Polb PE=2 S... [more]
DPOLB_DANRE4.060e-2432.74DNA polymerase beta OS=Danio rerio GN=polb PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_10H05_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10H05-P9-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046894 ID=CX046894; Name=CX046894; organism=Citrus sinensis; type=EST; length=845bp
TTTTTTTTTTTTTTTTTAGGATAAAAATTTTATAAGAACACAGAATTTTT
ACACCAAAAATATATACATTCAAAAACATCAAGTCTGATAACTTAAGTCG
AGCATCAAACGCAAGGCCTGTCACCATGACCACCAGCACACTTTACGGTA
TAATTAGTACCAAACATATGTCTGTTGACAGCCTCCTAAGTACAGCCTGC
CCTTTGATGCGTGCCTATCTACAGCATCATCTTACTGCTAAACACACTGC
ACATGTTTCACAAATTTCTTTCATGAGGTTCTAGCCAAGGAAATCCCAGG
AAATCAAACACCTCCTTTTCAGTATCAAATTTCAAACTTGTTCTCGCCCT
TACACCCTGTTTACCGCCTGAGCCATAAGTAGCTGGAAACAGCCCTGTAT
CATCAAGTCGGTATCCTTTGGATTCTGCTAGTAATCTCAACCTCCTATTT
AGTACATCATTCCCGGTCCATGCTATTAGCCCAAACGCATATATGTCCCT
TGGATACACCTCCTCGCTGTGAGTGCTGAAAATCAAATCCTCTCTTAAGA
ACTTCATTTCCTTTAACTTCTTCACATATTTTGACAAGAAACCCTTATGA
CTTTTTCTATCAGGATGCATAATTACAACATCTAGATCTCCACAGGAAGC
CTTTCCACGTCTGTATGATCCTCCACACAAAATGATCACCTCAGGCAAAA
CTTCTTCCCCGGCTTTCTGCAGAAGACGTTCCATCTGCTCAACCTCATGG
CGTGGAATCCTCGTCTTAATGTCATCGAAATATTTCAAACCTAATCTCTG
AGAATGTGTTAATGAATCTTCATTCTTCAAATCATCTAGTGTCCT
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