DN618457
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DN618457 vs. ExPASy Swiss-Prot
Match: RR13_ARATH (30S ribosomal protein S13, chloroplastic OS=Arabidopsis thaliana GN=RPS13 PE=2 SV=1) HSP 1 Score: 266.159 bits (679), Expect = 1.115e-70 Identity = 130/169 (76.92%), Postives = 147/169 (86.98%), Query Frame = 2 Query: 44 MVQTLAMPVAPALSVICNGHNNNLLTNASLSFPVSKQPQYPGLSIQCARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKAPR 550 M Q +AMPVA +LS+ICN +N L+ +L+ P S P LSI+CARVGGVEIP NKRIEYSLQYIHG+GRTRARQILVDL+MENKITKDM+EEELI +RDEVSKYMIEGDLRRFNALAI+RLKEIQCYRG+RHIQGLPCRGQ TKNNCRTLKGK++AIAGKKK + Sbjct: 1 MAQMVAMPVAHSLSLICNWAKSNPLSRNTLALPASNTPNKQSLSIRCARVGGVEIPANKRIEYSLQYIHGIGRTRARQILVDLQMENKITKDMAEEELIILRDEVSKYMIEGDLRRFNALAIKRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKGKKIAIAGKKKVSK 169
BLAST of DN618457 vs. ExPASy Swiss-Prot
Match: RT13_ARATH (Small ribosomal subunit protein S13, mitochondrial OS=Arabidopsis thaliana GN=RPS13 PE=2 SV=1) HSP 1 Score: 139.043 bits (349), Expect = 2.056e-32 Identity = 69/151 (45.70%), Postives = 97/151 (64.24%), Query Frame = 2 Query: 98 GHNNNLLTNASLSFPVSKQPQYPGLSIQCARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKAPR 550 G + T +S + + + GL +Q RVG E+PNNK ++ LQ ++G+GR ++ Q+L L + NK+ +D++ +ELI +R+EV ++ +LRR I+RL E+ CYRG RH GLPCRGQ T N RT KGK VAIAGKKKAPR Sbjct: 3 GLRRSATTLFDISQSLLRNVTFHGLRVQGIRVGNAEVPNNKPLKTGLQEVYGIGRRKSHQVLCHLGITNKLARDLTGKELIDLREEVGQHQHGDELRRRVGSEIQRLVEVDCYRGSRHRHGLPCRGQRTSTNARTKKGKAVAIAGKKKAPR 153
BLAST of DN618457 vs. ExPASy Swiss-Prot
Match: RS13_MYCGA (30S ribosomal protein S13 OS=Mycoplasma gallisepticum GN=rpsM PE=3 SV=3) HSP 1 Score: 130.568 bits (327), Expect = 7.312e-30 Identity = 66/119 (55.46%), Postives = 87/119 (73.11%), Query Frame = 2 Query: 185 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 538 AR+ G++IPNNKR+E SL YI+G+G+ RA++IL K++ NK KD+S+EEL IR S Y++EGDLRR AL I+RL E+ Y G+RH +GLP RGQ TK+N RT KG R +A KK Sbjct: 2 ARILGIDIPNNKRVEISLTYIYGIGKPRAQEILRKAKIDFNKRVKDLSDEELALIRSVASTYVLEGDLRRDVALNIKRLMEVGSYAGLRHRRGLPVRGQRTKSNARTRKGPRKTVANKK 120
BLAST of DN618457 vs. ExPASy Swiss-Prot
Match: RS13_MYCAP (30S ribosomal protein S13 OS=Mycoplasma agalactiae (strain PG2) GN=rpsM PE=3 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 7.312e-30 Identity = 65/119 (54.62%), Postives = 86/119 (72.27%), Query Frame = 2 Query: 185 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 538 AR+ +EIPNNKR+ SL YI+G+GRT A++I K++ I KD+SE +L IR+ +Y+ EGDLRR +L I+RL E++CYRGIRH +GLP RGQ TK+N RT KG R +AGKK Sbjct: 2 ARILNIEIPNNKRVVISLTYIYGIGRTSAQEICAKAKIDENIRVKDLSEAQLSAIREIAKEYVTEGDLRREVSLNIKRLMEVKCYRGIRHRKGLPVRGQSTKSNARTRKGPRKTVAGKK 120
BLAST of DN618457 vs. ExPASy Swiss-Prot
Match: RS13_ACICJ (30S ribosomal protein S13 OS=Acidiphilium cryptum (strain JF-5) GN=rpsM PE=3 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 1.629e-29 Identity = 66/124 (53.23%), Postives = 91/124 (73.39%), Query Frame = 2 Query: 185 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSK-YMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKAPR 550 AR+ GV IP+NKR+ SL+YI+G+G +AR+I L++ E+K +SE+E++ IR+ + + Y +EGDLRR A+ I+RL ++ CYRG+RH +GLP RGQ T N RT KGK VAIAGKKKA R Sbjct: 2 ARIAGVNIPSNKRVLISLRYIYGIGPAKAREICQSLEIGEDKRVNQLSEDEIMKIRELIDRDYRVEGDLRREVAMNIKRLVDLGCYRGLRHRKGLPVRGQRTHTNARTRKGKAVAIAGKKKATR 125
BLAST of DN618457 vs. ExPASy Swiss-Prot
Match: RS13_PEDPA (30S ribosomal protein S13 OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=rpsM PE=3 SV=1) HSP 1 Score: 128.642 bits (322), Expect = 2.779e-29 Identity = 64/120 (53.33%), Postives = 88/120 (73.33%), Query Frame = 2 Query: 185 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 541 AR+ GV++P +KRI L YI G+G T A++IL D ++ I +D++ ++ IR EV Y++EGDLRR +L I+RL+EI YRG+RH +GLP RGQHTKNN RT KGK+V+IAG+KK Sbjct: 2 ARIAGVDLPRDKRIVIGLTYIFGIGNTTAQKILKDAEVSEDIRVRDLTADQEDKIRAEVDNYLVEGDLRRTVSLNIKRLQEIGSYRGMRHRRGLPVRGQHTKNNARTRKGKKVSIAGRKK 121
BLAST of DN618457 vs. ExPASy Swiss-Prot
Match: RS13_MYCA5 (30S ribosomal protein S13 OS=Mycoplasma arthritidis (strain 158L3-1) GN=rpsM PE=3 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 8.084e-29 Identity = 71/119 (59.66%), Postives = 82/119 (68.91%), Query Frame = 2 Query: 185 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 538 ARV VEIPN KR SL YI G+G+T A QIL D + ENK + +SEEEL IR+E KY+ EGDLRR L I+RL EI+ YRGIRH +GLP RGQ T+ N RT KG R IAGKK Sbjct: 2 ARVLNVEIPNKKRAVISLTYIFGIGKTLASQILKDANVDENKKVESLSEEELTRIREEAKKYVTEGDLRREINLNIKRLMEIKSYRGIRHRKGLPVRGQCTQKNARTRKGPRKTIAGKK 120
BLAST of DN618457 vs. ExPASy Swiss-Prot
Match: RS13_ACHLI (30S ribosomal protein S13 OS=Acholeplasma laidlawii (strain PG-8A) GN=rpsM PE=3 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 8.084e-29 Identity = 63/121 (52.07%), Postives = 88/121 (72.73%), Query Frame = 2 Query: 185 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKA 544 AR+ GV+IP KR+ SLQYI+G+G+T A+++L + + I KD+++++L IR EV+K + EGDLRR + L I+RL EI YRGIRH +GLP GQ+T+NN RT KGK A+ GKK+A Sbjct: 2 ARIAGVDIPTQKRVVISLQYIYGIGQTTAQEVLKNANVSEDIRVKDLNDDQLSAIRGEVAKIVTEGDLRRESTLNIKRLMEIGSYRGIRHRKGLPVNGQNTRNNARTRKGKPKAVTGKKQA 122
BLAST of DN618457 vs. ExPASy Swiss-Prot
Match: RS13_MYCPE (30S ribosomal protein S13 OS=Mycoplasma penetrans GN=rpsM PE=3 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 1.379e-28 Identity = 68/119 (57.14%), Postives = 85/119 (71.43%), Query Frame = 2 Query: 185 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 538 AR+ GV+IPNNKR+ SL YI G+G++R+++IL K+ ENK +SEEEL TIR S+Y+IEGDLRR A+ I+RL EI YRGIRH + LP RGQ TK N RT KG R +A KK Sbjct: 2 ARILGVDIPNNKRVVISLTYIFGIGKSRSQEILSKAKIDENKKVSALSEEELATIRKIASEYVIEGDLRREVAMNIKRLMEIGSYRGIRHRRNLPVRGQRTKCNARTRKGPRKTVANKK 120
BLAST of DN618457 vs. ExPASy Swiss-Prot
Match: RS13_HERA2 (30S ribosomal protein S13 OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=rpsM PE=3 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 1.379e-28 Identity = 65/125 (52.00%), Postives = 89/125 (71.20%), Query Frame = 2 Query: 185 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSK-YMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKR-VAIAGKKKAPR 550 AR+ GV+IP NKR+E SL YI+G+GRT + +IL + + KD++E+E+I +R+ + + Y +EGDLRR L I+RL +I CYRGIRH +GLP RGQ TK N RT +GK+ AI GKKKA + Sbjct: 2 ARISGVDIPRNKRVEISLTYIYGIGRTTSTEILARTNINPNVRVKDLTEDEVIRLREIIDQDYTVEGDLRRAVQLNIKRLMDIGCYRGIRHRKGLPLRGQRTKTNARTRRGKKGAAIGGKKKATK 126 The following BLAST results are available for this feature:
BLAST of DN618457 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >DN618457 ID=DN618457; Name=DN618457; organism=Citrus sinensis; type=EST; length=666bpback to top |