DN618194

Overview
NameDN618194
Unique NameDN618194
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length343
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN618194_ssr55 microsatellite DN618194_ssr55:55..64. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH62_CUCMA (Chaperonin CPN60-2, mitochondrial OS=Cucurbita maxima GN=CPN60-2 PE=1 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 3.523e-53
Identity = 104/113 (92.04%), Postives = 111/113 (98.23%), Query Frame = 3
Query:    3 MISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            MISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITI DGKTL+NELEVVEGMKLDRGYISPYFITNQKNQKCEL+DPLIL+HEKKIS++ +VV+VLELALKRQRPLLI
Sbjct:  168 MISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITISDGKTLFNELEVVEGMKLDRGYISPYFITNQKNQKCELDDPLILIHEKKISSINSVVKVLELALKRQRPLLI 280          
BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH60A_ARATH (Chaperonin CPN60, mitochondrial OS=Arabidopsis thaliana GN=CPN60 PE=1 SV=2)

HSP 1 Score: 202.216 bits (513), Expect = 6.644e-52
Identity = 101/113 (89.38%), Postives = 109/113 (96.46%), Query Frame = 3
Query:    3 MISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            MISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITI DGKTL+NELEVVEGMKLDRGY SPYFITNQK QKCEL+DPLIL+HEKKIS++ ++V+VLELALKRQRPLLI
Sbjct:  167 MISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIQDGKTLFNELEVVEGMKLDRGYTSPYFITNQKTQKCELDDPLILIHEKKISSINSIVKVLELALKRQRPLLI 279          
BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH61_CUCMA (Chaperonin CPN60-1, mitochondrial OS=Cucurbita maxima GN=CPN60-1 PE=1 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 2.525e-51
Identity = 101/113 (89.38%), Postives = 110/113 (97.35%), Query Frame = 3
Query:    3 MISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            MISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITI DGKT+ NELEVVEGMKLDRGYISPYFITNQKNQKCEL+DPLI+++EKKIS++ AVV+VLELALK+QRPLLI
Sbjct:  168 MISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITISDGKTMDNELEVVEGMKLDRGYISPYFITNQKNQKCELDDPLIIIYEKKISSINAVVKVLELALKKQRPLLI 280          
BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH60B_ARATH (Chaperonin CPN60-like 1, mitochondrial OS=Arabidopsis thaliana GN=At2g33210 PE=1 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 3.297e-51
Identity = 100/113 (88.50%), Postives = 108/113 (95.58%), Query Frame = 3
Query:    3 MISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            MISTSEEIAQVGTISANG+REIGELIAKAME VGKEGVITI DGKTL+NELEVVEGMK+DRGYISPYFITN K QKCELEDPLIL+HEKKISN+ A+V+VLELALK+QRPLLI
Sbjct:  168 MISTSEEIAQVGTISANGDREIGELIAKAMETVGKEGVITIQDGKTLFNELEVVEGMKIDRGYISPYFITNPKTQKCELEDPLILIHEKKISNINAMVKVLELALKKQRPLLI 280          
BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH62_MAIZE (Chaperonin CPN60-2, mitochondrial OS=Zea mays GN=CPN60II PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 4.306e-51
Identity = 100/113 (88.50%), Postives = 108/113 (95.58%), Query Frame = 3
Query:    3 MISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            MISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITI DG TLYNELEVVEGMKLDRGYISPYFITN K QKCELEDPLIL+H+KK++N+ AVV+VLE+ALK+QRPLLI
Sbjct:  170 MISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIADGNTLYNELEVVEGMKLDRGYISPYFITNSKAQKCELEDPLILIHDKKVTNMHAVVKVLEMALKKQRPLLI 282          
BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH61_MAIZE (Chaperonin CPN60-1, mitochondrial OS=Zea mays GN=CPN60I PE=1 SV=2)

HSP 1 Score: 199.134 bits (505), Expect = 5.624e-51
Identity = 99/113 (87.61%), Postives = 108/113 (95.58%), Query Frame = 3
Query:    3 MISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            MISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITI DG TLYNELEVVEGMKLDRGYISPYFITN K QKCELEDPLIL+H+KK++N+ AVV+VLE+ALK+Q+PLLI
Sbjct:  170 MISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIADGNTLYNELEVVEGMKLDRGYISPYFITNSKTQKCELEDPLILIHDKKVTNMHAVVKVLEMALKKQKPLLI 282          
BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH60_BRANA (Chaperonin CPN60, mitochondrial OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 2.445e-46
Identity = 95/113 (84.07%), Postives = 103/113 (91.15%), Query Frame = 3
Query:    3 MISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            MISTSEEIAQVGTISANG+RE+     KAME VGKEGVITI DGKTL+NELEVVEGMK+DRGYISPYFITNQKNQKCELEDPLIL+HEKKISNL ++V+VLELALK QR LLI
Sbjct:  171 MISTSEEIAQVGTISANGDREL-VTDCKAMESVGKEGVITIQDGKTLFNELEVVEGMKIDRGYISPYFITNQKNQKCELEDPLILIHEKKISNLNSMVKVLELALKSQRSLLI 282          
BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH60C_ARATH (Chaperonin CPN60-like 2, mitochondrial OS=Arabidopsis thaliana GN=At3g13860 PE=1 SV=2)

HSP 1 Score: 174.866 bits (442), Expect = 1.136e-43
Identity = 87/113 (76.99%), Postives = 101/113 (89.38%), Query Frame = 3
Query:    3 MISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            MIST EEI QV TISANGEREIGELIA+AMEKVGKEGVIT+ DG TL NELEVVEGMKL RGYISPYFIT++K QKCELE+P+IL+HEKKIS++ ++++VLE A+K  RPLLI
Sbjct:  167 MISTPEEITQVATISANGEREIGELIARAMEKVGKEGVITVADGNTLDNELEVVEGMKLARGYISPYFITDEKTQKCELENPIILIHEKKISDINSLLKVLEAAVKSSRPLLI 279          
BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: CH601_MESSB (60 kDa chaperonin 1 OS=Mesorhizobium sp. (strain BNC1) GN=groL1 PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 5.111e-36
Identity = 74/112 (66.07%), Postives = 91/112 (81.25%), Query Frame = 3
Query:    6 ISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            I TSEE+AQVGTISANGE+EIG++IA+AM+KVG EGVIT+ + KT   ELEVVEGM+ DRGY+SPYFITN +    ELED  IL+HEKK+SNL A++ VLE  ++  RPLLI
Sbjct:  138 IKTSEEVAQVGTISANGEKEIGQMIAEAMQKVGNEGVITVEEAKTAETELEVVEGMQFDRGYLSPYFITNPEKMVAELEDVYILLHEKKLSNLQAMLPVLEAVVQSGRPLLI 249          
BLAST of DN618194 vs. ExPASy Swiss-Prot
Match: HSP60_CANAL (Heat shock protein 60, mitochondrial OS=Candida albicans GN=HSP60 PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 8.717e-36
Identity = 75/112 (66.96%), Postives = 93/112 (83.04%), Query Frame = 3
Query:    6 ISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIHDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLILVHEKKISNLTAVVRVLELALKRQRPLLI 341
            I+TSEEIAQV TISANG++ IG+L+A AMEKVGKEGVIT+ +GKTL +ELEV EGMK DRG+ISPYFITN K  K E E+PLIL+ EKKIS++  ++  LEL+ + +RPLLI
Sbjct:  154 ITTSEEIAQVATISANGDKHIGDLLANAMEKVGKEGVITVKEGKTLEDELEVTEGMKFDRGFISPYFITNTKTGKVEFENPLILLSEKKISSIQDILPSLELSNQTRRPLLI 265          
The following BLAST results are available for this feature:
BLAST of DN618194 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH62_CUCMA3.523e-5392.04Chaperonin CPN60-2, mitochondrial OS=Cucurbita max... [more]
CH60A_ARATH6.644e-5289.38Chaperonin CPN60, mitochondrial OS=Arabidopsis tha... [more]
CH61_CUCMA2.525e-5189.38Chaperonin CPN60-1, mitochondrial OS=Cucurbita max... [more]
CH60B_ARATH3.297e-5188.50Chaperonin CPN60-like 1, mitochondrial OS=Arabidop... [more]
CH62_MAIZE4.306e-5188.50Chaperonin CPN60-2, mitochondrial OS=Zea mays GN=C... [more]
CH61_MAIZE5.624e-5187.61Chaperonin CPN60-1, mitochondrial OS=Zea mays GN=C... [more]
CH60_BRANA2.445e-4684.07Chaperonin CPN60, mitochondrial OS=Brassica napus ... [more]
CH60C_ARATH1.136e-4376.99Chaperonin CPN60-like 2, mitochondrial OS=Arabidop... [more]
CH601_MESSB5.111e-3666.0760 kDa chaperonin 1 OS=Mesorhizobium sp. (strain B... [more]
HSP60_CANAL8.717e-3666.96Heat shock protein 60, mitochondrial OS=Candida al... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_02D20_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002D20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618194 ID=DN618194; Name=DN618194; organism=Citrus sinensis; type=EST; length=343bp
GAATGATCAGCACATCTGAGGAGATAGCACAGGTGGGGACAATATCAGCA
AATGGAGAGAGAGAAATTGGCGAGTTAATTGCAAAGGCCATGGAGAAGGT
CGGCAAAGAAGGAGTAATCACCATACACGATGGGAAGACATTATATAATG
AGTTGGAAGTTGTTGAAGGAATGAAGCTTGACAGGGGTTATATATCTCCT
TATTTCATAACCAACCAGAAAAATCAAAAATGTGAATTAGAAGATCCTCT
CATTCTTGTCCACGAGAAGAAAATCTCAAATCTAACTGCTGTTGTGAGGG
TATTAGAGCTGGCATTGAAGAGACAAAGGCCCTTATTGATTGT
back to top