DN618136

Overview
NameDN618136
Unique NameDN618136
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length585
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12466 contig Csv1_Contig12466:1130..1714. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN618136 vs. ExPASy Swiss-Prot
Match: RCA1_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Larrea tridentata GN=RCA1 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.936e-42
Identity = 62/91 (68.13%), Postives = 70/91 (76.92%), Query Frame = -3
Query:  311 ALRARVYDDEVRNWXXXXXXXXXXXSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFYG 583
            ALRARVY DEVR W            LVNSKE  P+FEQP+MT++KLL YG M+VQEQENVKRVQLADKY+SEAALG+AN DAI+ G FYG
Sbjct:  347 ALRARVYHDEVRKWVSEVGVDTIGKKLVNSKEGPPSFEQPKMTIDKLLGYGGMLVQEQENVKRVQLADKYMSEAALGDANNDAIKRGTFYG 437          

HSP 2 Score: 67.781 bits (164), Expect = 2.936e-42
Identity = 31/38 (81.58%), Postives = 34/38 (89.47%), Query Frame = -1
Query:  166 GGKAAQQM-NVPVPEGCTDPTAENFDPTARSDDGSCQY 276
            GG+AAQQ+ NVPVPEGCTDP A N+DPTARSDDGSC Y
Sbjct:  437 GGQAAQQVGNVPVPEGCTDPQATNYDPTARSDDGSCVY 474          
BLAST of DN618136 vs. ExPASy Swiss-Prot
Match: RCA_ARATH (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Arabidopsis thaliana GN=RCA PE=1 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 2.936e-42
Identity = 61/91 (67.03%), Postives = 68/91 (74.73%), Query Frame = -3
Query:  311 ALRARVYDDEVRNWXXXXXXXXXXXSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFYG 583
            ALRARVYDDEVR +            LVNS+E  P FEQP MT EKL+EYGNM+V EQENVKRVQLA+ YLS+AALG+ANADAI  G FYG
Sbjct:  347 ALRARVYDDEVRKFVESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLSQAALGDANADAIGRGTFYG 437          

HSP 2 Score: 71.633 bits (174), Expect = 2.936e-42
Identity = 30/36 (83.33%), Postives = 33/36 (91.67%), Query Frame = -1
Query:  166 GKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQY 273
            GK AQQ+N+PVPEGCTDP AENFDPTARSDDG+C Y
Sbjct:  437 GKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVY 472          
BLAST of DN618136 vs. ExPASy Swiss-Prot
Match: RCA_ORYSJ (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Oryza sativa subsp. japonica GN=RCA PE=1 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 6.497e-42
Identity = 60/91 (65.93%), Postives = 74/91 (81.32%), Query Frame = -3
Query:  311 ALRARVYDDEVRNWXXXXXXXXXXXSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFYG 583
            ALRARVYDDEVR W            LVNS+E  P FEQP+MT+EKL+EYG M+V+EQENVKRVQLA++YLSEAALG+AN+DA+++G+FYG
Sbjct:  338 ALRARVYDDEVRKWVSDTGVENIGKRLVNSREGPPEFEQPKMTIEKLMEYGYMLVKEQENVKRVQLAEQYLSEAALGDANSDAMKTGSFYG 428          

HSP 2 Score: 66.2402 bits (160), Expect = 6.497e-42
Identity = 30/38 (78.95%), Postives = 33/38 (86.84%), Query Frame = -1
Query:  163 GKAAQQM-NVPVPEGCTDPTAENFDPTARSDDGSCQYT 273
            G+ AQQ  N+PVPEGCTDP A+NFDPTARSDDGSC YT
Sbjct:  428 GQGAQQAGNLPVPEGCTDPVAKNFDPTARSDDGSCLYT 465          
BLAST of DN618136 vs. ExPASy Swiss-Prot
Match: RCA_SPIOL (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 3.179e-41
Identity = 59/91 (64.84%), Postives = 68/91 (74.73%), Query Frame = -3
Query:  311 ALRARVYDDEVRNWXXXXXXXXXXXSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFYG 583
            ALRARVY DEVR W            LVNSK+  P FEQP MT++KL+EYGNM+VQEQENVKRVQLAD+Y+S AALG+AN DAI  G F+G
Sbjct:  345 ALRARVYHDEVRKWVNSVGVDNVGKKLVNSKDGPPVFEQPEMTLQKLMEYGNMLVQEQENVKRVQLADQYMSSAALGDANKDAIDRGTFFG 435          

HSP 2 Score: 67.0106 bits (162), Expect = 3.179e-41
Identity = 28/38 (73.68%), Postives = 34/38 (89.47%), Query Frame = -1
Query:  160 GKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYTL 273
            GKAAQQ+++PV +GCTDP A+N+DPTARSDDGSC Y L
Sbjct:  435 GKAAQQVSLPVAQGCTDPEAKNYDPTARSDDGSCTYNL 472          
BLAST of DN618136 vs. ExPASy Swiss-Prot
Match: RCAA_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic OS=Hordeum vulgare GN=RCAA PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 5.398e-41
Identity = 59/91 (64.84%), Postives = 73/91 (80.22%), Query Frame = -3
Query:  311 ALRARVYDDEVRNWXXXXXXXXXXXSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFYG 583
            ALRARVYDDEVR W            LVNS++   TFEQP+MT+EKLLEYG+M+VQEQ+NVKRVQLAD Y+S+AALG+AN DA+++G+FYG
Sbjct:  337 ALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 427          

HSP 2 Score: 65.0846 bits (157), Expect = 5.398e-41
Identity = 28/37 (75.68%), Postives = 31/37 (83.78%), Query Frame = -1
Query:  163 GKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYT 273
            GK AQQ  +PVPEGCTD  A+N+DPTARSDDGSC YT
Sbjct:  427 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYT 463          
BLAST of DN618136 vs. ExPASy Swiss-Prot
Match: RCA_MALDO (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Malus domestica GN=RCA PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.033e-31
Identity = 67/91 (73.63%), Postives = 74/91 (81.32%), Query Frame = -3
Query:  311 ALRARVYDDEVRNWXXXXXXXXXXXSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFYG 583
            ALRARVYDDEVR W            LVNSKE  PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLADKYLSEAALG+AN+DA+ +G FYG
Sbjct:  347 ALRARVYDDEVRKWITGVGVDSIGKKLVNSKEGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLSEAALGDANSDAMNTGTFYG 437          
BLAST of DN618136 vs. ExPASy Swiss-Prot
Match: RCAB_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase B, chloroplastic OS=Hordeum vulgare GN=RCAB PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 9.665e-30
Identity = 63/91 (69.23%), Postives = 74/91 (81.32%), Query Frame = -3
Query:  311 ALRARVYDDEVRNWXXXXXXXXXXXSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFYG 583
            ALRARVYDDEVR W            LVNS+E  PTF+QP+MT+EKL+EYG+M+VQEQENVKRVQLADKYLSEAALG+AN DA+++G FYG
Sbjct:  334 ALRARVYDDEVRKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEYGHMLVQEQENVKRVQLADKYLSEAALGQANDDAMKTGAFYG 424          
BLAST of DN618136 vs. ExPASy Swiss-Prot
Match: RCA_PHAAU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus aureus GN=RCA PE=2 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 2.812e-29
Identity = 62/90 (68.89%), Postives = 73/90 (81.11%), Query Frame = -3
Query:  314 ALRARVYDDEVRNWXXXXXXXXXXXSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFY 583
            ALRARVYDDEVR W            LVNSKE  PTF+QP+M+++KLL+YGNM+VQEQENVKRVQLADKYL+EAALG AN DAI+SG+F+
Sbjct:  349 ALRARVYDDEVRKWISGVGVDATGKKLVNSKEGPPTFDQPKMSLDKLLQYGNMLVQEQENVKRVQLADKYLNEAALGNANEDAIKSGSFF 438          
BLAST of DN618136 vs. ExPASy Swiss-Prot
Match: RCA1_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.812e-29
Identity = 63/90 (70.00%), Postives = 72/90 (80.00%), Query Frame = -3
Query:  314 ALRARVYDDEVRNWXXXXXXXXXXXSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFY 583
            ALRARVYDDEVR W            L+NS +  PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLADKYL EAALG+ANADAI +G+F+
Sbjct:  351 ALRARVYDDEVRKWVSGTGIEKIGDKLLNSFDGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLKEAALGDANADAINNGSFF 440          
BLAST of DN618136 vs. ExPASy Swiss-Prot
Match: RCA2_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Larrea tridentata GN=RCA2 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 6.265e-29
Identity = 62/89 (69.66%), Postives = 71/89 (79.78%), Query Frame = -3
Query:  317 ALRARVYDDEVRNWXXXXXXXXXXXSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNF 583
            ALRARVYDDEVR W            LVNSKE  PTFEQP+MT++KLL+YGNM+V+EQENVKRVQLADKY+SEAALG+AN DAI+ G F
Sbjct:  347 ALRARVYDDEVRKWVSEVGVDTIGKKLVNSKEGPPTFEQPKMTIDKLLQYGNMLVEEQENVKRVQLADKYMSEAALGDANQDAIKRGTF 435          
The following BLAST results are available for this feature:
BLAST of DN618136 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RCA1_LARTR2.936e-4268.13Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ARATH2.936e-4267.03Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ORYSJ6.497e-4265.93Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SPIOL3.179e-4164.84Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAA_HORVU5.398e-4164.84Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MALDO1.033e-3173.63Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAB_HORVU9.665e-3069.23Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAAU2.812e-2968.89Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_TOBAC2.812e-2970.00Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_LARTR6.265e-2969.66Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02C14_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002C14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618136 ID=DN618136; Name=DN618136; organism=Citrus sinensis; type=EST; length=585bp
TTTTTTTTTTTTTTTTTGATCGAATAAAGAGTTGTGATATAACACAAAAT
TAGAGGATTCTTTCTAATTAACAAAGAAATGAAAATGCAACAATATTATT
TGAATATCTCACATCCTAAGCAAAGTGCGACACTTCTCAACCCTTAGAAA
CAAGGCCTAAAGCGTGTATTGGCAGCTTCCATCATCACTTCTTGCAGTTG
GATCAAAGTTTTCTGCAGTAGGATCAGTACATCCTTCAGGAACTGGAACA
TTCATTTGCTGGGCTGCTTTGCCTCCCATCAAGGCCTCTTAGCTAGGATC
AAGGGGGCTAACCATAGAAATTTCCACTCTGAATAGCATCTGCATTAGCT
TCACCAAGAGCGGCCTCACTCAAATACTTGTCAGCCAACTGAACTCTCTT
CACATTCTCTTGCTCTTGCACAATCATGTTTCCGTACTCGAGCAGCTTCT
CCATTGTCATCCTTGGTTGCTCGAATGTTGGGGCTGCTTCCTTTGAGTTC
ACAAGGCTCTTGCCAATGCTTCCAACACCAATACCAGAGATCCAATTCCT
CACCTCATCATCATAGACTCTGGCCCTCAGGGCTC
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