DN617980

Overview
NameDN617980
Unique NameDN617980
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length590
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617980_ssr43 microsatellite DN617980_ssr43:43..54. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9552 contig Csv1_Contig9552:921..1510. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617980 vs. ExPASy Swiss-Prot
Match: ODPB_STAPU (Pyruvate dehydrogenase E1 component subunit beta OS=Staurastrum punctulatum GN=pdhB PE=3 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 1.976e-62
Identity = 118/153 (77.12%), Postives = 132/153 (86.27%), Query Frame = -2
Query:  131 FEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQLC 589
            FEHVLLYNLKE IPD EY+  LE+AE+VRPG  +TILTYSRMR+HV+QA K+LV KGYDPE+IDI SLKP DL TI  SIKKTH+VLIVEECMRTGGIGASL A I E+  D+LDAPI+CLSSQDVPTPY+G LEE TV+QPAQIV AVEQLC
Sbjct:  171 FEHVLLYNLKETIPDNEYLVCLEKAEIVRPGTDITILTYSRMRHHVLQATKSLVYKGYDPEIIDIVSLKPVDLGTISTSIKKTHKVLIVEECMRTGGIGASLRATIMEHLFDFLDAPIMCLSSQDVPTPYSGPLEELTVIQPAQIVQAVEQLC 323          
BLAST of DN617980 vs. ExPASy Swiss-Prot
Match: ODPB_ZYGCR (Pyruvate dehydrogenase E1 component subunit beta OS=Zygnema circumcarinatum GN=pdhB PE=3 SV=2)

HSP 1 Score: 231.491 bits (589), Expect = 2.416e-60
Identity = 113/154 (73.38%), Postives = 133/154 (86.36%), Query Frame = -2
Query:  128 FEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQLCQ 589
            FEHVLLYNLKE + +EEY+  LE+AE+VRPG  +TILTYSRMR++V+QA K+LV KGYDPE+IDI SLKPFDL TIG S+ KTH+VLIVEECMRTGGIGA+L AAI E+F DYLDAPI+CLSSQDVPTPY+  LEE TV+QP QI+  VEQLC+
Sbjct:  171 FEHVLLYNLKEDLAEEEYLVCLEKAEVVRPGNDITILTYSRMRHNVLQATKSLVYKGYDPEIIDIVSLKPFDLGTIGASVCKTHKVLIVEECMRTGGIGATLRAAIMEHFFDYLDAPILCLSSQDVPTPYSSPLEELTVIQPNQIIQVVEQLCE 324          
BLAST of DN617980 vs. ExPASy Swiss-Prot
Match: ODPB_CHAGL (Pyruvate dehydrogenase E1 component subunit beta OS=Chaetosphaeridium globosum GN=pdhB PE=3 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 3.155e-60
Identity = 111/154 (72.08%), Postives = 132/154 (85.71%), Query Frame = -2
Query:  128 FEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQLCQ 589
            FEHVLLYNL E + ++EY+  LE+AE+VRPG  +TILTYSRMR+HV+QAAK LVNKGYDPE+IDI SLKP D+ TI  S++KTH+VLIVEECMRTGGIGASL AAI E+  DYLDAPI CLSSQDVPTPY+G LEE TV+QP QI+ AVE++C+
Sbjct:  171 FEHVLLYNLNENLIEQEYLLCLEKAEVVRPGNDITILTYSRMRHHVLQAAKVLVNKGYDPEIIDILSLKPLDMGTISLSVRKTHKVLIVEECMRTGGIGASLRAAILEDLFDYLDAPIQCLSSQDVPTPYSGPLEELTVIQPNQIIQAVEEMCK 324          
BLAST of DN617980 vs. ExPASy Swiss-Prot
Match: ODPB_CHAVU (Pyruvate dehydrogenase E1 component subunit beta OS=Chara vulgaris GN=pdhB PE=3 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 3.609e-56
Identity = 103/152 (67.76%), Postives = 127/152 (83.55%), Query Frame = -2
Query:  134 FEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQL 589
            FEHVLLYN+KE IP +EY+  LE+AE+VR G  +TILTYSRMRYHV+QAAKTL+ KGYDPE+IDI SLKP D+ TI  S++KTH+VLIVEECM+TGGIG +L +AI E+  D+LD PI+ LSSQDVPTPY G LE+ TV+QP+QIV A E++
Sbjct:  171 FEHVLLYNIKENIPQKEYLVPLEKAELVRSGNQITILTYSRMRYHVLQAAKTLIEKGYDPEIIDIISLKPLDMGTISTSLRKTHKVLIVEECMKTGGIGTTLKSAILESLFDFLDTPIMSLSSQDVPTPYNGFLEDLTVIQPSQIVEAAEKI 322          
BLAST of DN617980 vs. ExPASy Swiss-Prot
Match: ODPB_PORPU (Pyruvate dehydrogenase E1 component subunit beta OS=Porphyra purpurea GN=pdhB PE=3 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 5.963e-51
Identity = 96/152 (63.16%), Postives = 123/152 (80.92%), Query Frame = -2
Query:  134 FEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQL 589
            FEHVLLYNL+E IP++EY+  L++AE+VR G+ +TILTYSRMR+HV +A   L+N GYDPEV+D+ SLKP D+ +I  S+KKTHRVLIVEECM+T GIGA L A I E+  D LDAP+V LSSQD+PTPY G+LE+ TV+QP QI+ AV+ +
Sbjct:  171 FEHVLLYNLQEEIPEDEYLIPLDKAEVVRKGKDITILTYSRMRHHVTEALPLLLNDGYDPEVLDLISLKPLDIDSISVSVKKTHRVLIVEECMKTAGIGAELIAQINEHLFDELDAPVVRLSSQDIPTPYNGSLEQATVIQPHQIIDAVKNI 322          
BLAST of DN617980 vs. ExPASy Swiss-Prot
Match: ODPB_GRATL (Pyruvate dehydrogenase E1 component subunit beta OS=Gracilaria tenuistipitata var. liui GN=pdhB PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 7.788e-51
Identity = 95/152 (62.50%), Postives = 122/152 (80.26%), Query Frame = -2
Query:  134 FEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQL 589
            FEHVLLYNLK+ +P++EY   L++AE+VR G  VTILTYSRMR+HVMQA   LVN GY+PEVID+ SLKP D+ +I  S+ KTH+++IVEECM+TGGIGA + A I +N+ D+LDAPIV LSSQD+PTPY G LE+ TV+ P QI+ AV+ +
Sbjct:  171 FEHVLLYNLKDELPNDEYFLPLDKAELVRDGLDVTILTYSRMRHHVMQAVVDLVNDGYNPEVIDLISLKPLDITSIAQSLMKTHKLIIVEECMKTGGIGAEIIAQINDNYFDFLDAPIVRLSSQDIPTPYNGKLEKATVIYPQQIIEAVKSI 322          
BLAST of DN617980 vs. ExPASy Swiss-Prot
Match: ODPB_PORYE (Pyruvate dehydrogenase E1 component subunit beta OS=Porphyra yezoensis GN=pdhB PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 6.593e-50
Identity = 96/152 (63.16%), Postives = 119/152 (78.29%), Query Frame = -2
Query:  134 FEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQL 589
            FEHVLLYNL+E IP EEY   L + E VR G+ +TILTYSRMR+HV+QA   L+ +GYDPEVID+ SLKP D+ +I  S+KKTH+VLIVEECM+T GIGA L A I E   D LDAP+V LSSQD+PTPY G+LE+ TV+QP+QIV +V+ +
Sbjct:  171 FEHVLLYNLQEEIPQEEYFLPLNKVEFVRKGKDITILTYSRMRHHVIQALPALLKEGYDPEVIDLISLKPLDIDSISISVKKTHKVLIVEECMKTAGIGAELIAQINEYLFDELDAPVVRLSSQDIPTPYNGSLEQATVIQPSQIVDSVKSI 322          
BLAST of DN617980 vs. ExPASy Swiss-Prot
Match: ODPB_MESVI (Pyruvate dehydrogenase E1 component subunit beta OS=Mesostigma viride GN=pdhB PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 4.274e-49
Identity = 96/151 (63.58%), Postives = 118/151 (78.15%), Query Frame = -2
Query:  134 EHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQL 586
            EHVLLYNLK  +PD +Y+  LE+AE+VR G  +TILTYSRMRY+V+QA K LV KGYDPE+ID+ SLKPFD+ TIG SI+KTH+VLIVEE M TGGI   L + I ENF D LD   +CLSS +VPTPY+G LEE ++VQ A I+ +VEQ+
Sbjct:  172 EHVLLYNLKAEVPDNDYVLPLEKAEIVRQGNDITILTYSRMRYNVIQAVKVLVEKGYDPEIIDLISLKPFDIETIGKSIQKTHKVLIVEESMMTGGISNVLQSLILENFFDDLDNRPMCLSSPNVPTPYSGPLEEVSIVQTADIIESVEQI 322          
BLAST of DN617980 vs. ExPASy Swiss-Prot
Match: ODPB_CHLAT (Pyruvate dehydrogenase E1 component subunit beta OS=Chlorokybus atmophyticus GN=pdhB PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 1.796e-47
Identity = 93/149 (62.42%), Postives = 114/149 (76.51%), Query Frame = -2
Query:  140 EHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVE 586
            EHVLLYNLK  +PD +Y+  LE+AE+VR G  +T+LTYSR RY+V+QA K LV +GYDPEVID+ SLKPFD+ TIG SI+KTH+VLIVEECM TGGI   L + I +NF D LDA  + LSS +VPTPY G LEE TVVQ   I+ ++E
Sbjct:  172 EHVLLYNLKGEVPDNDYLLPLEKAELVREGSDITVLTYSRQRYNVIQAVKVLVEEGYDPEVIDLISLKPFDMETIGKSIQKTHKVLIVEECMMTGGISNVLQSLIIDNFFDALDAAPLILSSPNVPTPYTGPLEEATVVQTIDIIESIE 320          
BLAST of DN617980 vs. ExPASy Swiss-Prot
Match: ODPB_CYACA (Pyruvate dehydrogenase E1 component subunit beta OS=Cyanidium caldarium GN=pdhB PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 7.544e-46
Identity = 92/153 (60.13%), Postives = 113/153 (73.86%), Query Frame = -2
Query:  128 EHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQLCQ 586
            EHVLLYNLK  +PDEEY   L++AE+VR G  VTI+TYSRMRYHV+ A + LV  G DPE+ID+ SLKP DL+TI  SIKKTH+++IVEEC +TGGI A L + I    +D LD+P V LSS+DVP PY G LE+ T++QP QIV  V  L Q
Sbjct:  172 EHVLLYNLKGFVPDEEYYLPLDKAEVVRSGSDVTIVTYSRMRYHVLAAVEKLVLNGQDPEIIDLISLKPLDLHTISKSIKKTHKIVIVEECAQTGGIAAELISLINTYLYDELDSPAVRLSSKDVPIPYNGNLEKSTLIQPDQIVDVVTNLLQ 324          
The following BLAST results are available for this feature:
BLAST of DN617980 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
ODPB_STAPU1.976e-6277.12Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_ZYGCR2.416e-6073.38Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_CHAGL3.155e-6072.08Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_CHAVU3.609e-5667.76Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_PORPU5.963e-5163.16Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_GRATL7.788e-5162.50Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_PORYE6.593e-5063.16Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_MESVI4.274e-4963.58Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_CHLAT1.796e-4762.42Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_CYACA7.544e-4660.13Pyruvate dehydrogenase E1 component subunit beta O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01P06_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001P06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617980 ID=DN617980; Name=DN617980; organism=Citrus sinensis; type=EST; length=590bp
TTTTTTTTTTTTTTTTTATCGCACAAAATTGCTAACAATCTTAATAAATA
AATATTCAAAGCAAAGCTGCTGAGAACTAACACTGCATAGATAGATTCGG
TTATGACACTTCGGTATTCAAAAACTATTGGCAAAGCTGCTCAACTGCTG
TCACAATCTGGGCAGGTTGAACCACAGTCCATTCCTCCAATGTGCCGGCA
TATGGAGTTGGCACGTCCTGTGATGATAAGCATACAATAGGAGCATCCAA
GTAATCATGGAAATTCTCAGTGATAGCTGCAGTTAAACTAGCACCAATTC
CACCAGTCCGCATGCACTCCTCCACAATCAGTACACGATGTGTCTTTTTA
ATTGAATTTCCAATGGTATAAAGATCAAATGGTTTCAATGACCTGATGTC
AATAACCTCAGGATCATACCCTTTGTTTACCAAAGTTTTAGCAGCTTGCA
TCACATGATACCTCATTCGAGAATAGGTTAAAATAGTGACATGCTCCCCA
GGCCTAACCATCTCAGCTTCCTCAAGATTACAAATGTATTCCTCATCTGG
AATCCTTTCCTTGAGGTTGTAAAGCAACACATGCTCGAAA
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