DN617930

Overview
NameDN617930
Unique NameDN617930
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length605
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4430 contig Csv1_Contig4430:17..621. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617930 vs. ExPASy Swiss-Prot
Match: PSMD6_ARATH (Probable 26S proteasome non-ATPase regulatory subunit 6 OS=Arabidopsis thaliana GN=At4g24820 PE=2 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 7.174e-71
Identity = 130/171 (76.02%), Postives = 152/171 (88.89%), Query Frame = 2
Query:   92 SEGTQQAHLVLAHKRFLLTHPDVQDIEKVGLKGEVFSMVKAHDMASFYETLVAESVLEMDQSVLDSMRTKIEDELKKLDDRIADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERK 604
            +EG+QQ HL+LA+K FLLTHPDV DIEKV LK EV   +++H MA  YETL+A SVL++DQS+L+SMR   E+ELKKLD++IADAEENLGESEVREAHLAK+L++I+I DKEKALEQLK+TE KTVAVGQKMD+VFYTLQL FFYMDFDL+SKSIDKAK LFEEGGDWERK
Sbjct:    5 AEGSQQPHLILANKLFLLTHPDVPDIEKVQLKSEVLDFIRSHGMAPLYETLIASSVLDLDQSLLESMRAANEEELKKLDEKIADAEENLGESEVREAHLAKALYFIRISDKEKALEQLKLTEGKTVAVGQKMDVVFYTLQLAFFYMDFDLVSKSIDKAKKLFEEGGDWERK 175          
BLAST of DN617930 vs. ExPASy Swiss-Prot
Match: PSMD6_ORYSJ (26S proteasome non-ATPase regulatory subunit 6 OS=Oryza sativa subsp. japonica GN=RPN7 PE=2 SV=1)

HSP 1 Score: 257.299 bits (656), Expect = 4.352e-68
Identity = 127/170 (74.71%), Postives = 149/170 (87.65%), Query Frame = 2
Query:   95 EGTQQAHLVLAHKRFLLTHPDVQDIEKVGLKGEVFSMVKAHDMASFYETLVAESVLEMDQSVLDSMRTKIEDELKKLDDRIADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERK 604
            EG QQ HLVLAHK FLL+HPDV D+ KV L+ +V + VK+ DMAS YE+L A  VLE D ++L  MR +IE+E++KLD++IADAEENLGESEVREAHLAKSL++I++G+KEKALEQLKVTE KTVAVGQKMDLVF+TLQ+GFFYMDFDLISKSIDKAK LFEEGGDWERK
Sbjct:    8 EGKQQPHLVLAHKLFLLSHPDVDDLAKVDLRADVLAAVKSDDMASLYESLGAGGVLETDAALLAEMRGRIEEEIRKLDEKIADAEENLGESEVREAHLAKSLYFIRVGEKEKALEQLKVTEGKTVAVGQKMDLVFHTLQIGFFYMDFDLISKSIDKAKKLFEEGGDWERK 177          
BLAST of DN617930 vs. ExPASy Swiss-Prot
Match: PSMD6_BOVIN (26S proteasome non-ATPase regulatory subunit 6 OS=Bos taurus GN=PSMD6 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.510e-36
Identity = 78/174 (44.83%), Postives = 120/174 (68.97%), Query Frame = 2
Query:   86 MDSEGT-QQAHLVLAHKRFLLTHPDVQDIEKVGLKGEVFSMVKAHDMASFYETLVAESVLEMDQSVLDSMRTKIEDELKKLDDRIADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERK 604
            ++ EG  +   L +A  RFLL+ P+ +      ++ E+ + V+ ++MA +YE L      +MD  +L+ M+   EDELK+LD+ + DAE+NLGESE+R+A +AK+ +  +IGDKE AL   + T  KTVA+G ++D+VFY L++G FYMD DLI+++ +KAKSL EEGGDW+R+
Sbjct:    6 LEEEGLPKNPDLRIAQLRFLLSLPEHRG--DAAVRDELMAAVRDNNMAPYYEALCKSLEWQMDVDLLNKMKKANEDELKRLDEELEDAEKNLGESEIRDAMMAKAEYLCRIGDKEGALTAFRRTYDKTVALGHRLDIVFYLLRIGLFYMDNDLITRNTEKAKSLIEEGGDWDRR 177          
BLAST of DN617930 vs. ExPASy Swiss-Prot
Match: PSMD6_MOUSE (26S proteasome non-ATPase regulatory subunit 6 OS=Mus musculus GN=Psmd6 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.972e-36
Identity = 78/174 (44.83%), Postives = 119/174 (68.39%), Query Frame = 2
Query:   86 MDSEGT-QQAHLVLAHKRFLLTHPDVQDIEKVGLKGEVFSMVKAHDMASFYETLVAESVLEMDQSVLDSMRTKIEDELKKLDDRIADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERK 604
            ++ EG  +   L +A  RFLL+ P+ +      ++ E+ + V+ ++MA +YE L      +MD  +L  M+   E+ELK+LD+ + DAE+NLGESE+R+A +AK+ +  QIGDKE AL   + T  KTVA+G ++D+VFY L++G FYMD DLI+++ +KAKSL EEGGDW+R+
Sbjct:    6 LEEEGLPKNPDLRIAQLRFLLSLPEHRG--DAAVREELMAAVRENNMAPYYEALCKSLDWQMDVDLLSKMKKANEEELKRLDEELEDAEKNLGESEIRDAMMAKAEYLCQIGDKEGALTAFRKTYDKTVALGHRLDIVFYLLRIGLFYMDNDLITRNTEKAKSLIEEGGDWDRR 177          
BLAST of DN617930 vs. ExPASy Swiss-Prot
Match: PSMD6_HUMAN (26S proteasome non-ATPase regulatory subunit 6 OS=Homo sapiens GN=PSMD6 PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 4.393e-36
Identity = 77/174 (44.25%), Postives = 120/174 (68.97%), Query Frame = 2
Query:   86 MDSEGT-QQAHLVLAHKRFLLTHPDVQDIEKVGLKGEVFSMVKAHDMASFYETLVAESVLEMDQSVLDSMRTKIEDELKKLDDRIADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERK 604
            ++ EG  +   L +A  RFLL+ P+ +      ++ E+ + V+ ++MA +YE L      ++D  +L+ M+   EDELK+LD+ + DAE+NLGESE+R+A +AK+ +  +IGDKE AL   + T  KTVA+G ++D+VFY L++G FYMD DLI+++ +KAKSL EEGGDW+R+
Sbjct:    6 LEEEGLPKNPDLRIAQLRFLLSLPEHRG--DAAVRDELMAAVRDNNMAPYYEALCKSLDWQIDVDLLNKMKKANEDELKRLDEELEDAEKNLGESEIRDAMMAKAEYLCRIGDKEGALTAFRKTYDKTVALGHRLDIVFYLLRIGLFYMDNDLITRNTEKAKSLIEEGGDWDRR 177          
BLAST of DN617930 vs. ExPASy Swiss-Prot
Match: PSMD6_DICDI (26S proteasome non-ATPase regulatory subunit 6 OS=Dictyostelium discoideum GN=psmD6 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.256e-32
Identity = 63/133 (47.37%), Postives = 97/133 (72.93%), Query Frame = 2
Query:  206 VKAHDMASFYETLVAESVLEMDQSVLDSMRTKIEDELKKLDDRIADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERK 604
            ++ H M   Y+ LV +     DQ ++  ++ + E ELK LD++I D+ EN GESE+REA+LAKS FY +IGDK+ A+E  + T  KTV +GQK+D+VF  +++G F+MD D+++++++KA+SL EEGGDW+RK
Sbjct:   38 IETHKMLPLYKILVEQLKWTEDQGLVSKLKAENESELKALDNKITDSVENFGESEIREAYLAKSDFYCRIGDKDTAVEMYRQTFEKTVPLGQKLDIVFTLIRMGIFWMDHDIVTRNLEKAQSLVEEGGDWDRK 170          
BLAST of DN617930 vs. ExPASy Swiss-Prot
Match: PSMD6_DROME (26S proteasome non-ATPase regulatory subunit 6 OS=Drosophila melanogaster GN=Rpn7 PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.120e-31
Identity = 71/174 (40.80%), Postives = 115/174 (66.09%), Query Frame = 2
Query:   86 MDSEGTQQ-AHLVLAHKRFLLTHPDVQDIEKVGLKGEVFSMVKAHDMASFYETLVAESVLEMDQSVLDSMRTKIEDELKKLDDRIADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERK 604
            ++ +G ++  +L LA  +FLLT  + +  +   LK ++   ++  +MA +YE + +E    +D+ +L  M+     E+++LD  I DAE+NLGE EVREA+L KS +  +IGDK  A    + T  KTV++G ++D+VF+ ++LG FY+D DLI+++IDKAK L EEGGDW+R+
Sbjct:    6 LEEQGLEKNPNLELAQTKFLLTLAEYK--QDAALKAKLLEAIRTENMAPWYEHICSELGWTVDKDLLARMKENNRVEVEQLDAAIEDAEKNLGEMEVREANLKKSEYLCRIGDKAAAETAFRKTYEKTVSLGHRLDIVFHLIRLGLFYLDHDLITRNIDKAKYLIEEGGDWDRR 177          
BLAST of DN617930 vs. ExPASy Swiss-Prot
Match: PSMD6_CAEEL (26S proteasome non-ATPase regulatory subunit 6 OS=Caenorhabditis elegans GN=rpn-7 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.495e-31
Identity = 68/163 (41.72%), Postives = 103/163 (63.19%), Query Frame = 2
Query:  116 LVLAHKRFLLTHPDVQDIEKVGLKGEVFSMVKAHDMASFYETLVAESVLEMDQSVLDSMRTKIEDELKKLDDRIADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERK 604
            L L+  RF+L HP+V    K     ++   +K  DMA FYE + A+  + +D + L +M+   + ++ ++   + DAE+NLGESEVR+  L K  +Y QIGDK+ AL+    T  KTV +G ++D+VF  +++G F++D  LI+K I KAK L E+GGDWERK
Sbjct:   29 LELSQTRFMLNHPEVDSSVKEAKLEKLQETIKEFDMAPFYELVCADFKIVVDATQLAAMKAANQKKIDEITAEVEDAEKNLGESEVRQGLLRKFEYYCQIGDKDNALKAYTATYEKTVGMGYRIDVVFAMIRVGLFFLDHHLINKFITKAKELMEQGGDWERK 191          
BLAST of DN617930 vs. ExPASy Swiss-Prot
Match: RPN7_SCHPO (Probable 26S proteasome regulatory subunit rpn7 OS=Schizosaccharomyces pombe GN=rpn7 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.284e-19
Identity = 54/177 (30.51%), Postives = 97/177 (54.80%), Query Frame = 2
Query:   86 MDSEGTQQAHLVLAHKRFLLTHPDVQDIEKVGLKGEVFSMVKAHDMASFYETLV----AESVLEMDQSVLDSMRTKIEDELKKLDDRIADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERK 604
            M  +    + L ++   F L+ P +++  +  L   +FS ++ HD+A  Y+ L       + ++ D + L+SM  K E++L + D  I DA+E  GE E+ EA   K+ +Y  I D+E+ ++    T  +    G K+D++F  ++L + Y D  ++ + ++K K L E+GGDWERK
Sbjct:   13 MTEKARTVSDLTISQAIFELSSPFLENKSQKALD-TLFSAIRDHDLAPLYKYLSENPKTSASIDFDSNFLNSMIKKNEEKLAEFDKAIEDAQELNGEHEILEAMKNKADYYTNICDRERGVQLCDETFERATLTGMKIDVLFSKIRLAYVYADMRVVGQLLEKLKPLIEKGGDWERK 188          
BLAST of DN617930 vs. ExPASy Swiss-Prot
Match: RPN7_YEAST (26S proteasome regulatory subunit RPN7 OS=Saccharomyces cerevisiae GN=RPN7 PE=1 SV=3)

HSP 1 Score: 87.0409 bits (214), Expect = 7.791e-17
Identity = 53/182 (29.12%), Postives = 94/182 (51.65%), Query Frame = 2
Query:  122 LAHKRFLLTHPDVQDIEKVGLKGEVFSMVKAHDMASFYETLVAESV--------------------LEMDQSVLDSMRTKIEDELKKLDDRIADAEEN-LGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERK 604
            ++ K FLLT   V   ++      V + +K  +MA +Y+ L  E +                    ++ DQ + + +  K E ++K+L+++I   EE+  GE E  +A +    +Y QIGDK+ A + L  + SK ++ G K+D++    +LGFFY D   + + ++   S+ E+GGDWER+
Sbjct:   26 VSEKAFLLTQSKVSIEQRKEAAEFVLAKIKEEEMAPYYKYLCEEYLVNNGQSDLEHDEKSDSLNEWIKFDQELYNELCKKNESKIKELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERR 207          
The following BLAST results are available for this feature:
BLAST of DN617930 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
PSMD6_ARATH7.174e-7176.02Probable 26S proteasome non-ATPase regulatory subu... [more]
PSMD6_ORYSJ4.352e-6874.7126S proteasome non-ATPase regulatory subunit 6 OS=... [more]
PSMD6_BOVIN1.510e-3644.8326S proteasome non-ATPase regulatory subunit 6 OS=... [more]
PSMD6_MOUSE1.972e-3644.8326S proteasome non-ATPase regulatory subunit 6 OS=... [more]
PSMD6_HUMAN4.393e-3644.2526S proteasome non-ATPase regulatory subunit 6 OS=... [more]
PSMD6_DICDI2.256e-3247.3726S proteasome non-ATPase regulatory subunit 6 OS=... [more]
PSMD6_DROME1.120e-3140.8026S proteasome non-ATPase regulatory subunit 6 OS=... [more]
PSMD6_CAEEL2.495e-3141.7226S proteasome non-ATPase regulatory subunit 6 OS=... [more]
RPN7_SCHPO1.284e-1930.51Probable 26S proteasome regulatory subunit rpn7 OS... [more]
RPN7_YEAST7.791e-1729.1226S proteasome regulatory subunit RPN7 OS=Saccharo... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01O03_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001O03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617930 ID=DN617930; Name=DN617930; organism=Citrus sinensis; type=EST; length=605bp
CTCTGTATACTGGCGCTAGCTCCTTTCTCAAGCAAAGAACCAACTCGGAA
CGTATCTCAGTGAGTCATCAGCAGCCGAATTAGCCATGGACAGCGAAGGA
ACTCAGCAGGCGCATCTCGTACTCGCTCACAAGCGTTTCCTTCTTACGCA
CCCAGACGTTCAAGACATCGAGAAGGTTGGTCTCAAAGGGGAGGTCTTCT
CAATGGTCAAAGCCCACGACATGGCCTCGTTTTATGAAACCCTAGTGGCT
GAGTCTGTGCTGGAGATGGATCAAAGCGTTCTTGATTCGATGCGTACGAA
GATCGAAGACGAGCTTAAGAAACTTGATGATAGGATTGCTGATGCTGAAG
AAAACTTGGGTGAAAGCGAAGTCCGTGAAGCTCATCTAGCCAAATCCTTA
TTTTATATTCAGATTGGTGACAAGGAGAAAGCATTGGAACAACTGAAGGT
AACGGAAAGCAAAACAGTCGCAGTTGGGCAAAAGATGGACTTGGTGTTCT
ATACACTGCAGCTTGGATTTTTCTATATGGATTTTGATCTTATTTCCAAG
AGCATTGATAAAGCGAAGAGCCTGTTTGAAGAGGGAGGTGATTGGGAAAG
GAAGA
back to top