DN617477

Overview
NameDN617477
Unique NameDN617477
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length602
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8496 contig Csv1_Contig8496:102..703. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617477 vs. ExPASy Swiss-Prot
Match: CCL11_ARATH (Cyclin-L1-1 OS=Arabidopsis thaliana GN=CYCL1-1 PE=2 SV=2)

HSP 1 Score: 336.65 bits (862), Expect = 5.582e-92
Identity = 163/184 (88.59%), Postives = 175/184 (95.11%), Query Frame = 3
Query:   51 MIYTAIDNFYLTDEQLKDSPSRKDGIDEATETTLRIYGCDLIQESGILLKLPQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFHRMECRREGLPIEHLDLFSKKFSELKMEMSRTERHILKEMGFVCHVEHPHKFISNYLATLETPLELRQEAWNLANDSLR 602
            MIYTAIDNFYL+DEQLK SPSRKDGIDE TE +LRIYGCDLIQE GILLKLPQAVMATGQVLF RFYCK+S A+FDVKIVAAS VWLASKLEE+P+KARQVIIVFHRMECRRE LP+EHLD+++KKFSELK+E+SRTERHILKEMGFVCHVEHPHKFISNYLATLETP ELRQEAWNLANDSLR
Sbjct:    1 MIYTAIDNFYLSDEQLKASPSRKDGIDETTEISLRIYGCDLIQEGGILLKLPQAVMATGQVLFQRFYCKKSLAKFDVKIVAASCVWLASKLEENPKKARQVIIVFHRMECRRENLPLEHLDMYAKKFSELKVELSRTERHILKEMGFVCHVEHPHKFISNYLATLETPPELRQEAWNLANDSLR 184          
BLAST of DN617477 vs. ExPASy Swiss-Prot
Match: CCL11_ORYSJ (Cyclin-L1-1 OS=Oryza sativa subsp. japonica GN=CYCL1-1 PE=2 SV=1)

HSP 1 Score: 320.857 bits (821), Expect = 3.170e-87
Identity = 154/184 (83.70%), Postives = 169/184 (91.85%), Query Frame = 3
Query:   51 MIYTAIDNFYLTDEQLKDSPSRKDGIDEATETTLRIYGCDLIQESGILLKLPQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFHRMECRREGLPIEHLDLFSKKFSELKMEMSRTERHILKEMGFVCHVEHPHKFISNYLATLETPLELRQEAWNLANDSLR 602
            MIYTAID FYLTDEQL+DSPSRKDGIDEATET LR+YGCDLIQESGILLKLPQAVMAT QVLFHRFYCK+SF RF VK VAAS VWLA KLEESPR+++ +IIVFHRMECRRE +PIEHLD+FSKK+S+LK ++ RTERH+LKEMGF+CHVEHPHKFISNYLATLE P EL QEAWNLANDSLR
Sbjct:    1 MIYTAIDTFYLTDEQLRDSPSRKDGIDEATETALRVYGCDLIQESGILLKLPQAVMATAQVLFHRFYCKKSFVRFSVKRVAASCVWLAGKLEESPRRSKHIIIVFHRMECRRENVPIEHLDVFSKKYSDLKHDLVRTERHLLKEMGFICHVEHPHKFISNYLATLEAP-ELTQEAWNLANDSLR 183          
BLAST of DN617477 vs. ExPASy Swiss-Prot
Match: CCNL1_DANRE (Cyclin-L1 OS=Danio rerio GN=ccnl1 PE=1 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 4.959e-40
Identity = 87/187 (46.52%), Postives = 121/187 (64.71%), Query Frame = 3
Query:   54 IYTAIDNFYLTDEQLKDSPSRKDGIDEATETTLRIYGCDLIQESGILLKLPQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFHRME--CRREGLPIEHLDLFSKKFSELKMEMSRTERHILKEMGFVCHVEHPHKFISNYLATLETPLE--LRQEAWNLANDSLR 602
            ++ AIDN  + +++L  +PS  DG+D  TET LRI GC+ IQ +GILL+LPQ  MATGQV+F RF+  +SF + + +IVA + V LASK+EESPR+ R VI VFH ++    ++  P+    +  + +   K ++ + ER ILKE+GF  HV+HPHK I  YL  LE      L Q AWN  ND+LR
Sbjct:   30 VFLAIDNSIIPEDRLSTTPSMLDGLDHETETDLRILGCERIQSAGILLRLPQVAMATGQVIFQRFFFSKSFVKHNFEIVAMACVNLASKIEESPRRVRDVINVFHHLKQGKGKKSTPL----ILDQNYINTKNQVIKAERRILKELGFCVHVKHPHKIIVMYLQVLECEKNQMLVQTAWNYMNDALR 212          
BLAST of DN617477 vs. ExPASy Swiss-Prot
Match: CCNL1_RAT (Cyclin-L1 OS=Rattus norvegicus GN=Ccnl1 PE=1 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.105e-39
Identity = 87/181 (48.07%), Postives = 117/181 (64.64%), Query Frame = 3
Query:   66 IDNFYLTDEQLKDSPSRKDGIDEATETTLRIYGCDLIQESGILLKLPQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFHRMECRREGLPIEHLDLFSKKFSELKMEMSRTERHILKEMGFVCHVEHPHKFISNYLATLETPLE--LRQEAWNLANDSLR 602
            ID+  + +E+L  +PS +DG+D  +ET LRI GC+LIQ +GILL+LPQ  MATGQVLFHRF+  +SF +   +IVA + + LASK+EE+PR+ R VI VFH +   R G       +  + +   K ++ + ER +LKE+GF  HV+HPHK I  YL  LE      L Q AWN  NDSLR
Sbjct:   55 IDHSVIPEERLSPTPSMQDGLDLPSETDLRILGCELIQAAGILLRLPQVAMATGQVLFHRFFYSKSFVKHSFEIVAMACINLASKIEEAPRRIRDVINVFHHLRQLR-GKRTPSPLILDQNYINTKNQVIKAERRVLKELGFCVHVKHPHKIIVMYLQVLECERNQTLVQTAWNYMNDSLR 234          
BLAST of DN617477 vs. ExPASy Swiss-Prot
Match: CCNL1_MOUSE (Cyclin-L1 OS=Mus musculus GN=Ccnl1 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.105e-39
Identity = 87/181 (48.07%), Postives = 117/181 (64.64%), Query Frame = 3
Query:   66 IDNFYLTDEQLKDSPSRKDGIDEATETTLRIYGCDLIQESGILLKLPQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFHRMECRREGLPIEHLDLFSKKFSELKMEMSRTERHILKEMGFVCHVEHPHKFISNYLATLETPLE--LRQEAWNLANDSLR 602
            ID+  + +E+L  +PS +DG+D  +ET LRI GC+LIQ +GILL+LPQ  MATGQVLFHRF+  +SF +   +IVA + + LASK+EE+PR+ R VI VFH +   R G       +  + +   K ++ + ER +LKE+GF  HV+HPHK I  YL  LE      L Q AWN  NDSLR
Sbjct:   60 IDHSLIPEERLSPTPSMQDGLDLPSETDLRILGCELIQAAGILLRLPQVAMATGQVLFHRFFYSKSFVKHSFEIVAMACINLASKIEEAPRRIRDVINVFHHLRQLR-GKRTPSPLILDQNYINTKNQVIKAERRVLKELGFCVHVKHPHKIIVMYLQVLECERNQTLVQTAWNYMNDSLR 239          
BLAST of DN617477 vs. ExPASy Swiss-Prot
Match: CCNL1_HUMAN (Cyclin-L1 OS=Homo sapiens GN=CCNL1 PE=1 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.105e-39
Identity = 87/181 (48.07%), Postives = 117/181 (64.64%), Query Frame = 3
Query:   66 IDNFYLTDEQLKDSPSRKDGIDEATETTLRIYGCDLIQESGILLKLPQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFHRMECRREGLPIEHLDLFSKKFSELKMEMSRTERHILKEMGFVCHVEHPHKFISNYLATLETPLE--LRQEAWNLANDSLR 602
            ID+  + +E+L  +PS +DG+D  +ET LRI GC+LIQ +GILL+LPQ  MATGQVLFHRF+  +SF +   +IVA + + LASK+EE+PR+ R VI VFH +   R G       +  + +   K ++ + ER +LKE+GF  HV+HPHK I  YL  LE      L Q AWN  NDSLR
Sbjct:   54 IDHSLIPEERLSPTPSMQDGLDLPSETDLRILGCELIQAAGILLRLPQVAMATGQVLFHRFFYSKSFVKHSFEIVAMACINLASKIEEAPRRIRDVINVFHHLRQLR-GKRTPSPLILDQNYINTKNQVIKAERRVLKELGFCVHVKHPHKIIVMYLQVLECERNQTLVQTAWNYMNDSLR 233          
BLAST of DN617477 vs. ExPASy Swiss-Prot
Match: CCNL2_MOUSE (Cyclin-L2 OS=Mus musculus GN=Ccnl2 PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.443e-39
Identity = 87/185 (47.03%), Postives = 120/185 (64.86%), Query Frame = 3
Query:   54 IYTAIDNFYLTDEQLKDSPSRKDGIDEATETTLRIYGCDLIQESGILLKLPQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFHRMECRREGLPIEHLDLFSKKFSELKMEMSRTERHILKEMGFVCHVEHPHKFISNYLATLETP--LELRQEAWNLANDSLR 602
            +   ++N  L D++L+ +PS   G+D  TET LR+ GC+LIQ +GILL+LPQ  MATGQVLF RF+  +SF +  ++ V+ + V LASK+EE+PR+ R VI VFHR+   RE      L +  +++  LK ++ + ER +LKE+GF  HV+HPHK I  YL  LE      L Q AWN  NDSLR
Sbjct:   43 VLITLENCLLPDDKLRFTPSMSSGLDVDTETGLRVVGCELIQAAGILLRLPQVAMATGQVLFQRFFYTKSFVKHSMEHVSMACVHLASKIEEAPRRIRDVINVFHRLRHLREKKKPVPL-VLDQEYVNLKNQIIKAERRVLKELGFCVHVKHPHKIIVMYLQVLECERNQHLVQTAWNYMNDSLR 226          
BLAST of DN617477 vs. ExPASy Swiss-Prot
Match: CCNL2_RAT (Cyclin-L2 OS=Rattus norvegicus GN=Ccnl2 PE=2 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 1.884e-39
Identity = 87/185 (47.03%), Postives = 120/185 (64.86%), Query Frame = 3
Query:   54 IYTAIDNFYLTDEQLKDSPSRKDGIDEATETTLRIYGCDLIQESGILLKLPQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFHRMECRREGLPIEHLDLFSKKFSELKMEMSRTERHILKEMGFVCHVEHPHKFISNYLATLETP--LELRQEAWNLANDSLR 602
            +   ++N  L D++L+ +PS   G+D  TET LR+ GC+LIQ +GILL+LPQ  MATGQVLF RF+  +SF +  ++ V+ + V LASK+EE+PR+ R VI VFHR+   RE      L +  +++  LK ++ + ER +LKE+GF  HV+HPHK I  YL  LE      L Q AWN  NDSLR
Sbjct:   43 VLITLENCLLPDDKLRFTPSMSSGLDIDTETGLRVVGCELIQAAGILLRLPQVAMATGQVLFQRFFYTKSFVKHSMEHVSMACVHLASKIEEAPRRIRDVINVFHRLRHLREKKKPVPL-VLDQEYVNLKNQIIKAERRVLKELGFCVHVKHPHKIIVMYLQVLECERNQHLVQTAWNYMNDSLR 226          
BLAST of DN617477 vs. ExPASy Swiss-Prot
Match: CCNL2_HUMAN (Cyclin-L2 OS=Homo sapiens GN=CCNL2 PE=1 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 3.214e-39
Identity = 86/186 (46.24%), Postives = 121/186 (65.05%), Query Frame = 3
Query:   54 IYTAIDNFYLTDEQLKDSPSRKDGIDEATETTLRIYGCDLIQESGILLKLPQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFHRM-ECRREGLPIEHLDLFSKKFSELKMEMSRTERHILKEMGFVCHVEHPHKFISNYLATLETP--LELRQEAWNLANDSLR 602
            +   ++N  L D++L+ +PS   G+D  TET LR+ GC+LIQ +GILL+LPQ  MATGQVLF RF+  +SF +  ++ V+ + V LASK+EE+PR+ R VI VFHR+ + R +  P+    L  + +  LK ++ + ER +LKE+GF  HV+HPHK I  YL  LE      L Q +WN  NDSLR
Sbjct:   45 VLITLENCLLPDDKLRFTPSMSSGLDTDTETDLRVVGCELIQAAGILLRLPQVAMATGQVLFQRFFYTKSFVKHSMEHVSMACVHLASKIEEAPRRIRDVINVFHRLRQLRDKKKPVPL--LLDQDYVNLKNQIIKAERRVLKELGFCVHVKHPHKIIVMYLQVLECERNQHLVQTSWNYMNDSLR 228          
BLAST of DN617477 vs. ExPASy Swiss-Prot
Match: CCNL1_XENLA (Cyclin-L1 OS=Xenopus laevis GN=ccnl1 PE=2 SV=2)

HSP 1 Score: 161.384 bits (407), Expect = 3.214e-39
Identity = 87/188 (46.28%), Postives = 117/188 (62.23%), Query Frame = 3
Query:   54 IYTAIDNFYLTDEQLKDSPSRKDGIDEATETTLRIYGCDLIQESGILLKLPQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFH---RMECRREGLPIEHLDLFSKKFSELKMEMSRTERHILKEMGFVCHVEHPHKFISNYLATLETPLE--LRQEAWNLANDSLR 602
            +Y  ID   + +E+L  +PS  DG+D  TET LRI GC+LIQ +GILL+LPQ  MATGQVLFHRF+  +SF +   +I+A + + LASK+EE+PR+ R VI V H   ++  +R   P+    +  + +   K  + + ER ILKE+GF  HV+HPHK I  YL  LE      L Q AWN  ND LR
Sbjct:   30 VYLTIDYSLIPEERLSPTPSMSDGLDLNTETDLRILGCELIQSAGILLRLPQVAMATGQVLFHRFFYSKSFVKHSFEIIAMACINLASKIEEAPRRIRDVINVCHHLRQIRAKRTPSPL----ILDQSYINTKNHVIKAERRILKELGFCVHVKHPHKIIVMYLQVLECERNQTLVQTAWNYMNDCLR 213          
The following BLAST results are available for this feature:
BLAST of DN617477 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
CCL11_ARATH5.582e-9288.59Cyclin-L1-1 OS=Arabidopsis thaliana GN=CYCL1-1 PE=... [more]
CCL11_ORYSJ3.170e-8783.70Cyclin-L1-1 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCNL1_DANRE4.959e-4046.52Cyclin-L1 OS=Danio rerio GN=ccnl1 PE=1 SV=1[more]
CCNL1_RAT1.105e-3948.07Cyclin-L1 OS=Rattus norvegicus GN=Ccnl1 PE=1 SV=1[more]
CCNL1_MOUSE1.105e-3948.07Cyclin-L1 OS=Mus musculus GN=Ccnl1 PE=2 SV=1[more]
CCNL1_HUMAN1.105e-3948.07Cyclin-L1 OS=Homo sapiens GN=CCNL1 PE=1 SV=1[more]
CCNL2_MOUSE1.443e-3947.03Cyclin-L2 OS=Mus musculus GN=Ccnl2 PE=1 SV=1[more]
CCNL2_RAT1.884e-3947.03Cyclin-L2 OS=Rattus norvegicus GN=Ccnl2 PE=2 SV=2[more]
CCNL2_HUMAN3.214e-3946.24Cyclin-L2 OS=Homo sapiens GN=CCNL2 PE=1 SV=1[more]
CCNL1_XENLA3.214e-3946.28Cyclin-L1 OS=Xenopus laevis GN=ccnl1 PE=2 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01E04_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617477 ID=DN617477; Name=DN617477; organism=Citrus sinensis; type=EST; length=602bp
TGCCGAGGCAAATCCTCCAGGTAGTTGAAAGTGAGGGATCTTGAGCAAGA
ATGATTTACACGGCAATTGATAATTTTTACCTAACAGATGAGCAGCTAAA
GGACTCACCGTCTAGAAAAGATGGCATTGATGAAGCAACAGAAACCACTT
TGAGAATCTATGGCTGTGACCTCATTCAAGAAAGTGGAATTTTGCTTAAA
TTACCGCAAGCTGTAATGGCTACTGGTCAGGTTTTATTCCATCGTTTCTA
TTGCAAGAGATCATTTGCTCGTTTTGATGTGAAGATAGTGGCTGCTAGTT
CCGTATGGCTTGCATCAAAGCTGGAGGAGAGCCCTCGGAAAGCAAGGCAA
GTAATCATTGTTTTCCATAGAATGGAATGCAGAAGGGAGGGCTTACCCAT
AGAGCATTTGGATTTGTTTTCAAAGAAATTTTCAGAATTGAAAATGGAAA
TGAGCAGAACAGAAAGACATATATTGAAAGAGATGGGCTTTGTTTGTCAC
GTTGAACACCCTCACAAATTCATATCAAACTACCTTGCCACCCTTGAGAC
ACCTCTAGAATTGAGACAGGAAGCTTGGAATCTAGCAAATGATAGTCTGC
GC
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