DN617473

Overview
NameDN617473
Unique NameDN617473
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length624
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617473_ssr89 microsatellite DN617473_ssr89:89..103. BLAST: Citrus ESTs to Prunus persica proteins V1
DN617473_ssr4 microsatellite DN617473_ssr4:4..23. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12782 contig Csv1_Contig12782:187..812. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617473 vs. ExPASy Swiss-Prot
Match: MA1A1_RABIT (Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA (Fragment) OS=Oryctolagus cuniculus GN=MAN1A1 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.070e-16
Identity = 39/75 (52.00%), Postives = 59/75 (78.67%), Query Frame = 3
Query:  408 QRKQKVKDAMIHAWSSYEKYAWGQDELQPQTKNGVNS--FGGL-GATLIDALDTLYIMGLDEQFPRAREWIANSL 623
            +++ K+K+ M HAW+SY++YAWG +EL+P TK G +S  FG + GAT++DALDTL+IMG++ +F  A+ WIA +L
Sbjct:   10 EKRAKIKEMMEHAWNSYKRYAWGLNELKPITKEGHSSSLFGTIKGATIVDALDTLFIMGMESEFQEAKSWIAENL 84          
BLAST of DN617473 vs. ExPASy Swiss-Prot
Match: MA121_DROME (Mannosyl-oligosaccharide alpha-1,2-mannosidase isoform A OS=Drosophila melanogaster GN=alpha-Man-I PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 9.054e-16
Identity = 45/99 (45.45%), Postives = 64/99 (64.65%), Query Frame = 3
Query:  345 HIKQAKQPP---GNKAFAEDPIDI---QRKQKVKDAMIHAWSSYEKYAWGQDELQP--QTKNGVNSFGG--LGATLIDALDTLYIMGLDEQFPRAREWI 611
            H +Q  Q P   G    A D +D    +R+QKVK+ M HAW +Y+ YAWG++EL+P  Q  +  + FG   LGAT++D LDTLYIMGL++++   R+WI
Sbjct:  172 HNQQQPQLPLGGGGNDQAPDTLDATLEERRQKVKEMMEHAWHNYKLYAWGKNELRPLSQRPHSASIFGSYDLGATIVDGLDTLYIMGLEKEYREGRDWI 270          
BLAST of DN617473 vs. ExPASy Swiss-Prot
Match: MA1A2_MOUSE (Mannosyl-oligosaccharide 1,2-alpha-mannosidase IB OS=Mus musculus GN=Man1a2 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.634e-15
Identity = 51/150 (34.00%), Postives = 76/150 (50.67%), Query Frame = 3
Query:  222 RQTLVREHEVELSKLNEEATQLRNLLEEIKNNPANVIGKIDHIKQAKQ---------PPGNKAFAEDPIDIQ---RKQKVKDAMIHAWSSYEKYAWGQDELQPQTKNG--VNSFGG--LGATLIDALDTLYIMGLDEQFPRAREWIANSL 623
            R  +  +HE  L +  E+   LR   EEI+        K+    + K+         P        DP D++   ++ K+K+ M HAW +Y  Y WG +EL+P  + G   N FG   +GAT++DALDTLYIMGL ++F   + WI  +L
Sbjct:  108 RNKIRADHEKALEEAKEK---LRKSREEIRAEIQTEKNKVAQAMKTKETRVLPPVPVPQRVGVSGGDPEDMEIKKKRDKIKEMMKHAWDNYRTYGWGHNELRPIARKGHSTNIFGSSQMGATIVDALDTLYIMGLHDEFMDGQRWIEENL 254          
BLAST of DN617473 vs. ExPASy Swiss-Prot
Match: MA1A2_HUMAN (Mannosyl-oligosaccharide 1,2-alpha-mannosidase IB OS=Homo sapiens GN=MAN1A2 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.494e-15
Identity = 50/147 (34.01%), Postives = 79/147 (53.74%), Query Frame = 3
Query:  222 RQTLVREHEVELSKLNEEATQLRNLLE-EIKNNPANVIGKIDHIKQAKQPP-------GNKAFAEDPIDIQRK-QKVKDAMIHAWSSYEKYAWGQDELQPQTKNG--VNSFGG--LGATLIDALDTLYIMGLDEQFPRAREWIANSL 623
            R  +  +HE  L +  E+  + R  +  EI+     V+ ++   +    PP       G +    +  DI+ K +K+K+ M HAW +Y  Y WG +EL+P  + G   N FG   +GAT++DALDTLYIMGL ++F   + WI ++L
Sbjct:  108 RNKIRADHEKALEEAKEKLRKSREEIRAEIQTEKNKVVQEMKIKENKPLPPVPIPNLVGIRGGDPEDNDIREKREKIKEMMKHAWDNYRTYGWGHNELRPIARKGHSPNIFGSSQMGATIVDALDTLYIMGLHDEFLDGQRWIEDNL 254          
BLAST of DN617473 vs. ExPASy Swiss-Prot
Match: MA1A1_MOUSE (Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA OS=Mus musculus GN=Man1a1 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.869e-15
Identity = 36/75 (48.00%), Postives = 56/75 (74.67%), Query Frame = 3
Query:  408 QRKQKVKDAMIHAWSSYEKYAWGQDELQPQTKNGVNS--FGGL-GATLIDALDTLYIMGLDEQFPRAREWIANSL 623
            +++ K+K+ M HAW++Y++YAWG +EL+P +K G +S  FG + GAT++DALDTL+IMG+  +F  A+ WI   L
Sbjct:  196 EKRAKIKEMMTHAWNNYKRYAWGLNELKPISKEGHSSSLFGNIKGATIVDALDTLFIMGMKTEFQEAKSWIKKYL 270          
BLAST of DN617473 vs. ExPASy Swiss-Prot
Match: MA1C1_HUMAN (Mannosyl-oligosaccharide 1,2-alpha-mannosidase IC OS=Homo sapiens GN=MAN1C1 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.001e-14
Identity = 38/73 (52.05%), Postives = 55/73 (75.34%), Query Frame = 3
Query:  411 RKQKVKDAMIHAWSSYEKYAWGQDELQPQTKNGV--NSFGGL-GATLIDALDTLYIMGLDEQFPRAREWIANS 620
            +++K+K+ M  AW SY++YA G++EL+P TK+G   N FGGL GAT+ID+LDTLY+M L E+F  A+ W+  S
Sbjct:  174 QREKIKEMMQFAWQSYKRYAMGKNELRPLTKDGYEGNMFGGLSGATVIDSLDTLYLMELKEEFQEAKAWVGES 246          
BLAST of DN617473 vs. ExPASy Swiss-Prot
Match: MA1B1_HUMAN (Endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase OS=Homo sapiens GN=MAN1B1 PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.001e-14
Identity = 37/77 (48.05%), Postives = 54/77 (70.13%), Query Frame = 3
Query:  396 PIDIQRKQK-VKDAMIHAWSSYEKYAWGQDELQPQTKNGVNSFGGLGATLIDALDTLYIMGLDEQFPRAREWIANSL 623
            P+ +  +QK V D  +HAW  Y K+AWG DEL+P +++    FG LG TLIDALDT++I+GL ++F  AR+W++  L
Sbjct:  243 PVHLNYRQKGVIDVFLHAWKGYRKFAWGHDELKPVSRSFSEWFG-LGLTLIDALDTMWILGLRKEFEEARKWVSKKL 318          
BLAST of DN617473 vs. ExPASy Swiss-Prot
Match: YKU1_SCHPO (Putative mannosyl-oligosaccharide 1,2-alpha-mannosidase OS=Schizosaccharomyces pombe GN=SPAC2E1P5.01c PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.307e-14
Identity = 41/89 (46.07%), Postives = 55/89 (61.80%), Query Frame = 3
Query:  360 KQPPGNKAFAEDPIDIQRKQKVKDAMIHAWSSYEKYAWGQDELQPQTKNGVNSFG-GLGATLIDALDTLYIMGLDEQFPRAREWIANSL 623
            ++PPG   + +     +RK  +K   I +W+ YE Y WG+DE  P  K G N    G+G  +ID+LDT+ IMGLDEQ  RAREW+ NSL
Sbjct:   32 QRPPG---YTKLKGSTRRKALIKKTFIESWTDYETYGWGKDEYYPIIKRGRNYLRKGMGWMIIDSLDTMMIMGLDEQVLRAREWVNNSL 117          
BLAST of DN617473 vs. ExPASy Swiss-Prot
Match: MAN12_CAEEL (Mannosyl-oligosaccharide 1,2-alpha-mannosidase C52E4.5 OS=Caenorhabditis elegans GN=C52E4.5 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.307e-14
Identity = 37/74 (50.00%), Postives = 54/74 (72.97%), Query Frame = 3
Query:  411 RKQKVKDAMIHAWSSYEKYAWGQDELQPQTK--NGVNSFGG--LGATLIDALDTLYIMGLDEQFPRAREWIANS 620
            R+QKVK+ MIHAW  Y+ Y+WG +EL+P +K  N  N FGG  + AT++DA DTL+IM L +++  AR++I N+
Sbjct:  139 RRQKVKEMMIHAWEGYKNYSWGANELRPMSKKPNSQNIFGGSQMPATIVDAADTLFIMDLKDKYKEARDYIENN 212          
BLAST of DN617473 vs. ExPASy Swiss-Prot
Match: MA1A1_PIG (Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA OS=Sus scrofa GN=MAN1A1 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.489e-14
Identity = 37/87 (42.53%), Postives = 59/87 (67.82%), Query Frame = 3
Query:  381 AFAEDPIDI---QRKQKVKDAMIHAWSSYEKYAWGQDELQPQTKNGVNS--FGGL-GATLIDALDTLYIMGLDEQFPRAREWIANSL 623
            A   +P D    +++ K+K+ M HAW++Y+ YAWG++EL+P +K G +S  FG + GAT++DALDTL+IM +  +F  A+ W+   L
Sbjct:  188 AIDREPADAAVREKRAKIKEMMKHAWNNYKLYAWGKNELKPVSKGGHSSSLFGNIKGATIVDALDTLFIMKMKNEFEEAKAWVEEHL 274          
The following BLAST results are available for this feature:
BLAST of DN617473 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
MA1A1_RABIT1.070e-1652.00Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA ... [more]
MA121_DROME9.054e-1645.45Mannosyl-oligosaccharide alpha-1,2-mannosidase iso... [more]
MA1A2_MOUSE2.634e-1534.00Mannosyl-oligosaccharide 1,2-alpha-mannosidase IB ... [more]
MA1A2_HUMAN4.494e-1534.01Mannosyl-oligosaccharide 1,2-alpha-mannosidase IB ... [more]
MA1A1_MOUSE5.869e-1548.00Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA ... [more]
MA1C1_HUMAN1.001e-1452.05Mannosyl-oligosaccharide 1,2-alpha-mannosidase IC ... [more]
MA1B1_HUMAN1.001e-1448.05Endoplasmic reticulum mannosyl-oligosaccharide 1,2... [more]
YKU1_SCHPO1.307e-1446.07Putative mannosyl-oligosaccharide 1,2-alpha-mannos... [more]
MAN12_CAEEL1.307e-1450.00Mannosyl-oligosaccharide 1,2-alpha-mannosidase C52... [more]
MA1A1_PIG6.489e-1442.53Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01E02_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617473 ID=DN617473; Name=DN617473; organism=Citrus sinensis; type=EST; length=624bp
TTAAAAATAAAATAAAATAAAATAGTTGATTTAGGAGTTCAGCTTTTGTT
GTTAGATCTAATTTAATCAATCAGATGGCGAGGAATAGATCATCATCATC
ATCATTATCATCATCAAGTGGCAAATTGAGATACTGTAATCCGGCGTATT
ACCTGAAGAGACCGAAGCGTTTGGCTATGCTTTTGATCGTGTTTGTTTCT
GTTACTCTGGTCGTTTGGGATCGCCAGACTCTTGTTAGAGAACACGAGGT
TGAACTTTCCAAGTTAAATGAAGAAGCTACTCAATTGCGAAATCTGCTGG
AAGAGATAAAGAATAACCCTGCCAATGTAATTGGAAAAATTGATCACATA
AAACAAGCTAAACAGCCCCCTGGAAACAAGGCATTTGCGGAGGATCCTAT
TGATATCCAGCGAAAACAGAAAGTAAAAGATGCTATGATTCATGCATGGA
GTTCATATGAGAAGTATGCATGGGGCCAAGATGAACTTCAGCCACAGACT
AAGAATGGGGTCAACAGCTTTGGTGGTCTTGGAGCAACACTAATTGATGC
TCTCGATACATTATACATAATGGGTCTGGATGAACAATTTCCAAGAGCTA
GAGAGTGGATTGCGAACTCGTTGG
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