DN617457

Overview
NameDN617457
Unique NameDN617457
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length613
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5726 contig Csv1_Contig5726:1..613. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DN617457 vs. ExPASy Swiss-Prot
Match: PME3_CITSI (Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.821e-14
Identity = 42/69 (60.87%), Postives = 42/69 (60.87%), Query Frame = 1 
Query:  406 MTRIKEFFTKLSESSTNQNISNIPXXXXXXXXXXXXXXXXXXXXXXXXXXXNSRKNSGDNGNEPHHAIL 612
            MTRIKEFFTKLSESSTNQNISNIP                           NSRKNSGDNGNEPHHAIL
Sbjct:    1 MTRIKEFFTKLSESSTNQNISNIPKKKKKLFLALFATLLVVAAVIGIVAGVNSRKNSGDNGNEPHHAIL 69
[Close]
BLAST of DN617457 vs. ExPASy Swiss-Prot
Match: PME1_CITSI (Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.119e-13
Identity = 40/69 (57.97%), Postives = 41/69 (59.42%), Query Frame = 1 
Query:  406 MTRIKEFFTKLSESSTNQNISNIPXXXXXXXXXXXXXXXXXXXXXXXXXXXNSRKNSGDNGNEPHHAIL 612
            MT IKEFFTKLSESS+NQNISNIP                           NSRKNSGDNGNEPHHAIL
Sbjct:    1 MTHIKEFFTKLSESSSNQNISNIPKKKKKLFLALFATLLVVAAVIGIVAGVNSRKNSGDNGNEPHHAIL 69
[Close]
BLAST of DN617457 vs. ExPASy Swiss-Prot
Match: PLST4_ARATH (Plastidic glucose transporter 4 OS=Arabidopsis thaliana GN=At5g16150 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 7.713e-12
Identity = 39/56 (69.64%), Postives = 46/56 (82.14%), Query Frame = -3 
Query:  258 NSFMRVIFFLDKREQKFGISTVYLGFATVCLLAVLYIAVNVVETKGRSLEEIERAL 425
            ++F+  ++FL     KFGIS+VYLGFA VC+LAVLYIA NVVETKGRSLEEIE AL
Sbjct:  488 SNFVIGLYFLSV-VTKFGISSVYLGFAGVCVLAVLYIAGNVVETKGRSLEEIELAL 542
The following BLAST results are available for this feature:
BLAST of DN617457 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PME3_CITSI2.821e-1460.87Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1[more]
PME1_CITSI3.119e-1357.97Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE... [more]
PLST4_ARATH7.713e-1269.64Plastidic glucose transporter 4 OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_01D18_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001D18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617457 ID=DN617457; Name=DN617457; organism=Citrus sinensis; type=EST; length=613bp
TTTTTTTTGGCCAAATCAGTGTCACTTACTGAGAATTTCAAAGAAACACA
TATATTTAACAAAAGTTGGTTGGGTTTCAAATCTGTGCAAAACAGAGCAA
AATGAGAATCAGCAAACGAGATAGTCCGGGAGGTAGAATAAAGAAGGAAA
GCTCTACAGAAGAAAATTGTCTTGCTTATTCAAGGTCAGTGTCCACGAGC
CGCAGGGAGATTATTACCCACCCACTTCTACCATTTTCAGTATCAAACTA
CTGGATTGAGAGCACGCTCTATCTCCTCCAATGATCGTCCCTTTGTTTCT
ACAACATTAACGGCTATGTACAAGACGGCAAGGAGACAGACGGTTGCAAA
TCCCAAATACACTGTACTGATTCCAAACTTTTGTTCTCTCTTATCGAGAA
AAAAAATGACCCGCATAAAAGAATTCTTCACAAAACTTTCTGAATCTTCT
ACCAACCAAAACATTTCCAATATTCCCAAGAAAAAAAAGAAACTATTCTT
AGCTCTTTTTGCAACGCTACTCGTTGTCGCTGCCGTAATCGGCATTGTCG
CCGGAGTGAACTCAAGAAAAAACTCCGGCGACAACGGCAACGAGCCTCAT
CATGCTATCCTCA
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