DN617433

Overview
NameDN617433
Unique NameDN617433
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length599
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617433 vs. ExPASy Swiss-Prot
Match: NPL1A_XENLA (Nucleosome assembly protein 1-like 1-A OS=Xenopus laevis GN=nap1l1-A PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.437e-15
Identity = 45/102 (44.12%), Postives = 59/102 (57.84%), Query Frame = 3
Query:  222 DSNKPLINASGDYLKKSDILAAIQY----------AQVENLPAPVKKRVNALKNLQLDVTNLEAKFYEEVHLLECKYNKLYFPIHEKRQLIVTGQYEPTAEE 497
            D+N      +   ++   +LAA+Q             +E+LP  VK+RVNALKNLQ+    +EAKFYEEVH LE KY  LY P+ +KR  I+   YEPT EE
Sbjct:   31 DANSKARQLTAQMMQNPQVLAALQERLDDLVGTPTGYIESLPKVVKRRVNALKNLQVKCAQIEAKFYEEVHELERKYAALYQPLFDKRSDIINATYEPTEEE 132          
BLAST of DN617433 vs. ExPASy Swiss-Prot
Match: NP1L1_XENTR (Nucleosome assembly protein 1-like 1 OS=Xenopus tropicalis GN=nap1l1 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.437e-15
Identity = 45/102 (44.12%), Postives = 59/102 (57.84%), Query Frame = 3
Query:  222 DSNKPLINASGDYLKKSDILAAIQY----------AQVENLPAPVKKRVNALKNLQLDVTNLEAKFYEEVHLLECKYNKLYFPIHEKRQLIVTGQYEPTAEE 497
            D+N      +   ++   +LAA+Q             +E+LP  VK+RVNALKNLQ+    +EAKFYEEVH LE KY  LY P+ +KR  I+   YEPT EE
Sbjct:   31 DANSKARQLTAQMMQNPQVLAALQERLDDLVGTPTGYIESLPKVVKRRVNALKNLQVKCAQIEAKFYEEVHELERKYAALYQPLFDKRSDIINATYEPTEEE 132          
BLAST of DN617433 vs. ExPASy Swiss-Prot
Match: NPL1B_XENLA (Nucleosome assembly protein 1-like 1-B OS=Xenopus laevis GN=nap1l1-B PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.450e-15
Identity = 42/78 (53.85%), Postives = 50/78 (64.10%), Query Frame = 3
Query:  264 KKSDILAAIQYAQVENLPAPVKKRVNALKNLQLDVTNLEAKFYEEVHLLECKYNKLYFPIHEKRQLIVTGQYEPTAEE 497
            ++ D L       +E+LP  VK+RVNALKNLQ+    +EAKFYEEVH LE KY  LY P  EKR  I+   YEPT EE
Sbjct:   55 ERLDDLVGTPTGYIESLPKVVKRRVNALKNLQVKCAQIEAKFYEEVHELERKYAALYQPFFEKRSDIINASYEPTEEE 132          
BLAST of DN617433 vs. ExPASy Swiss-Prot
Match: NP1L1_RAT (Nucleosome assembly protein 1-like 1 OS=Rattus norvegicus GN=Nap1l1 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.538e-14
Identity = 44/89 (49.44%), Postives = 55/89 (61.80%), Query Frame = 3
Query:  261 LKKSDILAAIQY----------AQVENLPAPVKKRVNALKNLQLDVTNLEAKFYEEVHLLECKYNKLYFPIHEKRQLIVTGQYEPTAEE 497
            ++   ILAA+Q             +E+LP  VK+RVNALKNLQ+    +EAKFYEEVH LE KY  LY P+ +KR  I+   YEPT EE
Sbjct:   43 MQNPQILAALQERLDGLVDTPTGYIESLPKVVKRRVNALKNLQVKCAQIEAKFYEEVHDLERKYAVLYQPLFDKRFEIINAIYEPTEEE 131          
BLAST of DN617433 vs. ExPASy Swiss-Prot
Match: NP1L1_PONAB (Nucleosome assembly protein 1-like 1 OS=Pongo abelii GN=NAP1L1 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.538e-14
Identity = 41/78 (52.56%), Postives = 51/78 (65.38%), Query Frame = 3
Query:  264 KKSDILAAIQYAQVENLPAPVKKRVNALKNLQLDVTNLEAKFYEEVHLLECKYNKLYFPIHEKRQLIVTGQYEPTAEE 497
            ++ D L       +E+LP  VK+RVNALKNLQ+    +EAKFYEEVH LE KY  LY P+ +KR  I+   YEPT EE
Sbjct:   54 ERLDGLVETPTGYIESLPRVVKRRVNALKNLQVKCAQIEAKFYEEVHDLERKYAVLYQPLFDKRFEIINAIYEPTEEE 131          
BLAST of DN617433 vs. ExPASy Swiss-Prot
Match: NP1L1_MOUSE (Nucleosome assembly protein 1-like 1 OS=Mus musculus GN=Nap1l1 PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 3.538e-14
Identity = 44/89 (49.44%), Postives = 55/89 (61.80%), Query Frame = 3
Query:  261 LKKSDILAAIQY----------AQVENLPAPVKKRVNALKNLQLDVTNLEAKFYEEVHLLECKYNKLYFPIHEKRQLIVTGQYEPTAEE 497
            ++   ILAA+Q             +E+LP  VK+RVNALKNLQ+    +EAKFYEEVH LE KY  LY P+ +KR  I+   YEPT EE
Sbjct:   43 MQNPQILAALQERLDGLVDTPTGYIESLPKVVKRRVNALKNLQVKCAQIEAKFYEEVHDLERKYAVLYQPLFDKRFEIINAIYEPTEEE 131          
BLAST of DN617433 vs. ExPASy Swiss-Prot
Match: NP1L1_HUMAN (Nucleosome assembly protein 1-like 1 OS=Homo sapiens GN=NAP1L1 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.538e-14
Identity = 41/78 (52.56%), Postives = 51/78 (65.38%), Query Frame = 3
Query:  264 KKSDILAAIQYAQVENLPAPVKKRVNALKNLQLDVTNLEAKFYEEVHLLECKYNKLYFPIHEKRQLIVTGQYEPTAEE 497
            ++ D L       +E+LP  VK+RVNALKNLQ+    +EAKFYEEVH LE KY  LY P+ +KR  I+   YEPT EE
Sbjct:   54 ERLDGLVETPTGYIESLPRVVKRRVNALKNLQVKCAQIEAKFYEEVHDLERKYAVLYQPLFDKRFEIINAIYEPTEEE 131          
BLAST of DN617433 vs. ExPASy Swiss-Prot
Match: NP1L1_BOVIN (Nucleosome assembly protein 1-like 1 OS=Bos taurus GN=NAP1L1 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.538e-14
Identity = 41/78 (52.56%), Postives = 51/78 (65.38%), Query Frame = 3
Query:  264 KKSDILAAIQYAQVENLPAPVKKRVNALKNLQLDVTNLEAKFYEEVHLLECKYNKLYFPIHEKRQLIVTGQYEPTAEE 497
            ++ D L       +E+LP  VK+RVNALKNLQ+    +EAKFYEEVH LE KY  LY P+ +KR  I+   YEPT EE
Sbjct:   54 ERLDGLVETPTGYIESLPRVVKRRVNALKNLQVKCAQIEAKFYEEVHDLERKYAVLYQPLFDKRFEIINAIYEPTEEE 131          
BLAST of DN617433 vs. ExPASy Swiss-Prot
Match: NP1L4_BOVIN (Nucleosome assembly protein 1-like 4 OS=Bos taurus GN=NAP1L4 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.036e-14
Identity = 41/90 (45.56%), Postives = 56/90 (62.22%), Query Frame = 3
Query:  261 LKKSDILAAIQY----------AQVENLPAPVKKRVNALKNLQLDVTNLEAKFYEEVHLLECKYNKLYFPIHEKRQLIVTGQYEPTAEES 500
            ++   +LAA+Q           + +E LP  VK+R+NALK LQ+   ++EAKFYEEVH LE KY  LY P+ +KR+  +TG  EPT  ES
Sbjct:   32 MQNPQVLAALQERLDNVSHTPSSYIETLPKAVKRRINALKQLQVKCAHIEAKFYEEVHDLERKYAALYQPLFDKRREFITGDVEPTDAES 121          
BLAST of DN617433 vs. ExPASy Swiss-Prot
Match: NP1L4_RAT (Nucleosome assembly protein 1-like 4 OS=Rattus norvegicus GN=Nap1l4 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.883e-14
Identity = 41/90 (45.56%), Postives = 56/90 (62.22%), Query Frame = 3
Query:  261 LKKSDILAAIQY----------AQVENLPAPVKKRVNALKNLQLDVTNLEAKFYEEVHLLECKYNKLYFPIHEKRQLIVTGQYEPTAEES 500
            ++   +LAA+Q           + +E LP  VK+R+NALK LQ+   ++EAKFYEEVH LE KY  LY P+ +KR+  +TG  EPT  ES
Sbjct:   32 MQNPQVLAALQERLDNVSHTPSSYIETLPKAVKRRINALKQLQVRCAHIEAKFYEEVHDLERKYAALYQPLFDKRREFITGDVEPTDAES 121          
The following BLAST results are available for this feature:
BLAST of DN617433 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
NPL1A_XENLA1.437e-1544.12Nucleosome assembly protein 1-like 1-A OS=Xenopus ... [more]
NP1L1_XENTR1.437e-1544.12Nucleosome assembly protein 1-like 1 OS=Xenopus tr... [more]
NPL1B_XENLA2.450e-1553.85Nucleosome assembly protein 1-like 1-B OS=Xenopus ... [more]
NP1L1_RAT3.538e-1449.44Nucleosome assembly protein 1-like 1 OS=Rattus nor... [more]
NP1L1_PONAB3.538e-1452.56Nucleosome assembly protein 1-like 1 OS=Pongo abel... [more]
NP1L1_MOUSE3.538e-1449.44Nucleosome assembly protein 1-like 1 OS=Mus muscul... [more]
NP1L1_HUMAN3.538e-1452.56Nucleosome assembly protein 1-like 1 OS=Homo sapie... [more]
NP1L1_BOVIN3.538e-1452.56Nucleosome assembly protein 1-like 1 OS=Bos taurus... [more]
NP1L4_BOVIN6.036e-1445.56Nucleosome assembly protein 1-like 4 OS=Bos taurus... [more]
NP1L4_RAT7.883e-1445.56Nucleosome assembly protein 1-like 4 OS=Rattus nor... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01D06_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617433 ID=DN617433; Name=DN617433; organism=Citrus sinensis; type=EST; length=599bp
GAAGAGGCGCCGTGCGAGAAAAATAACTTGTTCGTTCCCGGTATTCTTCA
TTCAGTATTCGTTGAATTAAGCCTAATTTATTGCGTTGCCAACATCAACG
AGTTCTGTTTCTAAGAATCCTAGTTACCCTCACGCTATATTGAAGTATTC
GAAAAATGTCGGTTACTTCAGAAGGTATGTCTTCTGGCTCGGCTTCCGGA
TCCGAAGAGAACGAAAATACAGACAGCAACAAGCCTTTAATTAATGCTTC
CGGCGATTACTTGAAGAAGTCGGATATTCTCGCTGCTATTCAATATGCTC
AAGTTGAAAACTTACCGGCCCCTGTTAAGAAACGTGTAAATGCCTTGAAA
AATCTACAGTTAGATGTTACGAATCTAGAGGCCAAGTTCTACGAAGAGGT
TCATTTACTAGAATGCAAGTACAATAAACTGTATTTTCCTATTCATGAAA
AGCGACAACTTATCGTCACTGGACAATATGAACCTACTGCCGAAGAAAGT
GAGTGGAAGTTGGATTTGATGGAAGATCTGAAAGAGAAAGCAAAATTGGA
AGAAACTACTGAGAAAACCGATGACAGTACTAAAGACGATAGTTCAATC
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