DN617394
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DN617394 vs. ExPASy Swiss-Prot
Match: SNUT2_MOUSE (U4/U6.U5 tri-snRNP-associated protein 2 OS=Mus musculus GN=Usp39 PE=2 SV=2) HSP 1 Score: 265.003 bits (676), Expect = 3.284e-70 Identity = 130/232 (56.03%), Postives = 164/232 (70.69%), Query Frame = 3 Query: 3 NLNVYACLVCGKYYQGRGQKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEINDPSLDDIRHVLNPRFTKEQVDQLDKNKLWSRALDGSDYLPGMVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSP-------LVHRFGELTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNT-KKNTSIIYECFQGELEV-VKEIP 671 ++N YACLVCGKY+QGRG KSHAY HS++ HHV++NL T K YCLPD YEI D SL+DI +VL P FTK+Q+ LDK SRA DG+ YLPG+VGLNNIK D+ N +Q+L V PLRN+FL +NY++ K P LV RFGEL RK+W+ RNFK VSPHE LQAV+ SKK F+I Q + V+F+SW LN LHS L T KK +I+ + FQG + + K++P Sbjct: 129 HINAYACLVCGKYFQGRGLKSHAYIHSVQFSHHVFLNLHTLKFYCLPDNYEIIDSSLEDITYVLKPTFTKQQIANLDKQAKLSRAYDGTTYLPGIVGLNNIKANDYANAVLQALSNVPPLRNYFLEEDNYKNIKRPPGDIMFLLVQRFGELMRKLWNPRNFKAHVSPHEMLQAVVLCSKKTFQITKQGDGVDFLSWFLNALHSALGGTKKKKKTIVNDVFQGSMRIFTKKLP 360
BLAST of DN617394 vs. ExPASy Swiss-Prot
Match: SNUT2_HUMAN (U4/U6.U5 tri-snRNP-associated protein 2 OS=Homo sapiens GN=USP39 PE=1 SV=2) HSP 1 Score: 265.003 bits (676), Expect = 3.284e-70 Identity = 130/232 (56.03%), Postives = 164/232 (70.69%), Query Frame = 3 Query: 3 NLNVYACLVCGKYYQGRGQKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEINDPSLDDIRHVLNPRFTKEQVDQLDKNKLWSRALDGSDYLPGMVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSP-------LVHRFGELTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNT-KKNTSIIYECFQGELEV-VKEIP 671 ++N YACLVCGKY+QGRG KSHAY HS++ HHV++NL T K YCLPD YEI D SL+DI +VL P FTK+Q+ LDK SRA DG+ YLPG+VGLNNIK D+ N +Q+L V PLRN+FL +NY++ K P LV RFGEL RK+W+ RNFK VSPHE LQAV+ SKK F+I Q + V+F+SW LN LHS L T KK +I+ + FQG + + K++P Sbjct: 130 HINAYACLVCGKYFQGRGLKSHAYIHSVQFSHHVFLNLHTLKFYCLPDNYEIIDSSLEDITYVLKPTFTKQQIANLDKQAKLSRAYDGTTYLPGIVGLNNIKANDYANAVLQALSNVPPLRNYFLEEDNYKNIKRPPGDIMFLLVQRFGELMRKLWNPRNFKAHVSPHEMLQAVVLCSKKTFQITKQGDGVDFLSWFLNALHSALGGTKKKKKTIVTDVFQGSMRIFTKKLP 361
BLAST of DN617394 vs. ExPASy Swiss-Prot
Match: SNUT2_PONAB (U4/U6.U5 tri-snRNP-associated protein 2 OS=Pongo abelii GN=USP39 PE=2 SV=1) HSP 1 Score: 264.618 bits (675), Expect = 4.290e-70 Identity = 130/232 (56.03%), Postives = 164/232 (70.69%), Query Frame = 3 Query: 3 NLNVYACLVCGKYYQGRGQKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEINDPSLDDIRHVLNPRFTKEQVDQLDKNKLWSRALDGSDYLPGMVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSP-------LVHRFGELTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNT-KKNTSIIYECFQGELEV-VKEIP 671 ++N YACLVCGKY+QGRG KSHAY HS++ HHV++NL T K YCLPD YEI D SL+DI +VL P FTK+Q+ LDK SRA DG+ YLPG+VGLNNIK D+ N +Q+L V PLRN+FL +NY++ K P LV RFGEL RK+W+ RNFK VSPHE LQAV+ SKK F+I Q + V+F+SW LN LHS L T KK +I+ + FQG + + K++P Sbjct: 130 HVNAYACLVCGKYFQGRGLKSHAYIHSVQFSHHVFLNLHTLKFYCLPDNYEIIDSSLEDITYVLKPTFTKQQIANLDKQAKLSRAYDGTTYLPGIVGLNNIKANDYANAVLQALSNVPPLRNYFLEEDNYKNIKRPPGDIMFLLVQRFGELMRKLWNPRNFKAHVSPHEMLQAVVLCSKKTFQITKQGDGVDFLSWFLNALHSALGGTKKKKKTIVTDVFQGSMRIFTKKLP 361
BLAST of DN617394 vs. ExPASy Swiss-Prot
Match: UBP10_SCHPO (Probable mRNA-splicing protein ubp10 OS=Schizosaccharomyces pombe GN=ubp10 PE=2 SV=1) HSP 1 Score: 211.46 bits (537), Expect = 4.309e-54 Identity = 115/263 (43.73%), Postives = 157/263 (59.70%), Query Frame = 3 Query: 3 NLNVYACLVCGKYYQGRGQKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEINDPSLDDIRHVLNPRFTKEQVDQLDKNKLWSRALDGSDYLPGMVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSPLVHRFGELTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTK----KNTSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRMPFLML 779 NL+VYACLVCG+Y+QGRG SHAY H+L HHV++N T K Y LP+ Y++ +L DI +V+ P FTK +V +LD S L Y+PG VG+NNIK D+ NV I L V P RN+FL+ +N+ +C LV R L RK+W+ + FK VSP E +Q V S K++ I Q +PVEF+SW LNTLH+ L K K TSI++ FQG + + + + Q+ EKG D + +T+ +PFL L Sbjct: 83 NLSVYACLVCGRYFQGRGPSSHAYFHALTENHHVFVNCSTLKFYVLPESYQVESSALQDIAYVMRPTFTKLEVQRLDHTPQLSYDLMLKPYVPGFVGMNNIKNNDYFNVVIHMLAHVKPFRNYFLL-KNFDNCPQ-LVQRLAILIRKLWNHKAFKSHVSPQELIQEVTVLSHKKYSINEQKDPVEFLSWFLNTLHNCLGGKKSTIAKPTSIVHYSFQGFVRIESQKIR-------QHAEKGEQVVFTGDRV-IQTNVVPFLYL 335
BLAST of DN617394 vs. ExPASy Swiss-Prot
Match: SAD1_YEAST (Pre-mRNA-splicing factor SAD1 OS=Saccharomyces cerevisiae GN=SAD1 PE=1 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.352e-23 Identity = 67/226 (29.65%), Postives = 112/226 (49.56%), Query Frame = 3 Query: 6 LNVYACLVCGKYYQGRGQKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEINDPS----LDDIRHVLNPRFTKEQVDQLDKNKLWSRALDGSDYLPGMVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSPLVHRFGELTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVE---FMSWLLNTLHSDLRNTKKNTSIIYECFQGELEVVK 662 LNVY CLVCG YYQGR +KS A+ HS++ HHV++NL + K Y LP +I L+ I+ P + + ++ + L YL G +G N D+ + + + + P+R+ FL+ N+ + + R +KIW + FK +S +F+ S + R G+ NP++ F+ WL N + S + K SI+ +G++++ K Sbjct: 55 LNVYCCLVCGHYYQGRHEKSPAFIHSIDENHHVFLNLTSLKFYMLPQNVQILHDGEVQLLNSIKFAAYPTYCPKDLEDFPRQCF---DLSNRTYLNGFIGFTNAATYDYAHSVLLLISHMVPVRDHFLL--NHFDNQGEFIKRLSICVKKIWSPKLFKHHLSVDDFV------SYLKVREGLNLNPIDPRLFLLWLFNKICSSSNDLK---SILNHSCKGKVKIAK 266
BLAST of DN617394 vs. ExPASy Swiss-Prot
Match: UBP33_XENTR (Ubiquitin carboxyl-terminal hydrolase 33 OS=Xenopus tropicalis GN=usp33 PE=2 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.454e-11 Identity = 71/274 (25.91%), Postives = 114/274 (41.61%), Query Frame = 3 Query: 9 NVYACLVCGKYYQGRGQK--SHAYTHSLEAGHHVYINLRTEKVYCLPDGYEINDPSLDDIRHVLNPRFTKEQVDQLDKNKLWSR----------------ALDGSDYLP--GMVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHC--KSPLVHRFGELTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRM 764 N++ACL G Y G G+ H+ HS + H + +NL T +V+C Y + D + P K Q ++K+ S L+ D L G+ GL NI T ++N +Q+L PL ++FL K L + +L IWH +N G V P Q + K+ FR Q + EF+ L++ LH +L+ I+ + +V+E S +D N D G D+ +E+ ++ Sbjct: 39 NLWACLENGCSYVGCGESHVDHSTLHSQDTKHCLTVNLTTLRVWC----YTCSKEVFLDRKLSTQPTSAKLQDSHTQESKMSSSLTLKIPAAVVSENLDIELEEEDELKTRGLTGLKNIGNTCYMNAALQALSNCPPLTHYFLDCGGLARTDKKPALCKSYQKLMSDIWH-KNRPGFVIPTNLFQGI-KSVNPTFRGYSQQDAQEFLRCLMDVLHEELKE-----QIVEVEEDAQTGIVEENLDEDKSQSD-NDFHSCDSGSSSDHAESESRKL 300
BLAST of DN617394 vs. ExPASy Swiss-Prot
Match: UBP33_PONAB (Ubiquitin carboxyl-terminal hydrolase 33 OS=Pongo abelii GN=USP33 PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 4.512e-11 Identity = 62/221 (28.05%), Postives = 95/221 (42.99%), Query Frame = 3 Query: 9 NVYACLV--CGKYYQGRGQKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEI-------NDPSLDDIRHVLNPRFTKEQVDQLDKNKLWSRAL-----------DGSDYL--PGMVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENY-RHCKSPLVHR-FGELTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLR 599 N++ACL C G Q H+ HS E H++ +NL T +V+C E+ PSL +R + Q ++ N L D D L G+ GL NI T ++N +Q+L PL FFL R K P + + + +L ++WH ++ G V P Q + K FR Q + EF+ L++ LH +L+ Sbjct: 39 NLWACLENRCSYVGCGESQVDHSTIHSQETKHYLTVNLTTLRVWCYACSKEVFLDRKLGTQPSLPHVRQPHQIQENSVQDFKIPSNTTLKTPLVAVFDDLDIEVDEEDELRARGLTGLKNIGNTCYMNAALQALSNCPPLTQFFLDCGGLARTDKKPAICKSYLKLMTELWH-KSRPGSVVPTNLFQGI-KTVNPTFRGYSQQDAQEFLRCLMDLLHEELK 257
BLAST of DN617394 vs. ExPASy Swiss-Prot
Match: UBP33_HUMAN (Ubiquitin carboxyl-terminal hydrolase 33 OS=Homo sapiens GN=USP33 PE=1 SV=2) HSP 1 Score: 68.1662 bits (165), Expect = 5.892e-11 Identity = 62/221 (28.05%), Postives = 95/221 (42.99%), Query Frame = 3 Query: 9 NVYACLV--CGKYYQGRGQKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEI-------NDPSLDDIRHVLNPRFTKEQVDQLDKNKLWSRAL-----------DGSDYL--PGMVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENY-RHCKSPLVHR-FGELTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLR 599 N++ACL C G Q H+ HS E H++ +NL T +V+C E+ PSL +R + Q ++ N L D D L G+ GL NI T ++N +Q+L PL FFL R K P + + + +L ++WH ++ G V P Q + K FR Q + EF+ L++ LH +L+ Sbjct: 70 NLWACLENRCSYVGCGESQVDHSTIHSQETKHYLTVNLTTLRVWCYACSKEVFLDRKLGTQPSLPHVRQPHQIQENSVQDFKIPSNTTLKTPLVAVFDDLDIEADEEDELRARGLTGLKNIGNTCYMNAALQALSNCPPLTQFFLDCGGLARTDKKPAICKSYLKLMTELWH-KSRPGSVVPTTLFQGI-KTVNPTFRGYSQQDAQEFLRCLMDLLHEELK 288 The following BLAST results are available for this feature:
BLAST of DN617394 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 8
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >DN617394 ID=DN617394; Name=DN617394; organism=Citrus sinensis; type=EST; length=781bpback to top |