DN617390

Overview
NameDN617390
Unique NameDN617390
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length797
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12554 contig Csv1_Contig12554:52..848. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617390 vs. ExPASy Swiss-Prot
Match: RLC1_CITLI ((R)-limonene synthase 1 OS=Citrus limon PE=2 SV=1)

HSP 1 Score: 448.743 bits (1153), Expect = 1.671e-125
Identity = 222/255 (87.06%), Postives = 230/255 (90.20%), Query Frame = 3
Query:   33 MSSCINPSTLATSVNGFKCLPLATNRAAIRIMAKNKPVQCLVSTKYDNLTVDRRSANYQPSIWDHDFLQSLNSNYTDETYKRRAEELKGKVKTAIKDVTEPLDQLELIDNLQRLGLAYHFEPEXXXXXXXXXXXXKDYNWRKENLYATSLEFRLLRQHGYPVSQEVFSGFKDDKVGFICDDFKGILSLHEASYYSLEGESIMEEAWQFTSKHLKEMMITSNSKEEDVFVAEQAKRALELPLHWKVPMLEARWFIH 797
            MSSCINPSTL TSVN FKCLPLATN+AAIRIMAK KPVQCL+S KYDNLTVDRRSANYQPSIWDHDFLQSLNSNYTDE YKRRAEEL+GKVK AIKDV EPLDQLELIDNLQRLGLA+ FE E            KDYNWRKENLYATSLEFRLLRQHGYPVSQEVF+GFKDD+ GFICDDFKGILSLHEASYYSLEGESIMEEAWQFTSKHLKE+MI+ N  EEDVFVAEQAKRALELPLHWKVPMLEARWFIH
Sbjct:    1 MSSCINPSTLVTSVNAFKCLPLATNKAAIRIMAKYKPVQCLISAKYDNLTVDRRSANYQPSIWDHDFLQSLNSNYTDEAYKRRAEELRGKVKIAIKDVIEPLDQLELIDNLQRLGLAHRFETEIRNILNNIYNNNKDYNWRKENLYATSLEFRLLRQHGYPVSQEVFNGFKDDQGGFICDDFKGILSLHEASYYSLEGESIMEEAWQFTSKHLKEVMISKN-MEEDVFVAEQAKRALELPLHWKVPMLEARWFIH 254          
BLAST of DN617390 vs. ExPASy Swiss-Prot
Match: MYRS_QUEIL (Myrcene synthase, chloroplastic OS=Quercus ilex PE=1 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 8.181e-56
Identity = 116/239 (48.54%), Postives = 159/239 (66.53%), Query Frame = 3
Query:   96 LATNRAAIRIMAKNKPVQCLVSTKYDNLT-VDRRSANYQPSIWDHDFLQSLNSNYTDETYKRRAEELKGKVKTAIKDVTEPLDQLELIDNLQRLGLAYHFEPEXXXXXXXXXXXXKDYN-WRKENLYATSLEFRLLRQHGYPVSQEVFSGFKDDKVGF---ICDDFKGILSLHEASYYSLEGESIMEEAWQFTSKHLKEMMITSNSKEEDVFVAEQAKRALELPLHWKVPMLEARWFIH 797
            L T+R     +A+  PVQC+V+ K      + RRSANYQPSIW+HD+++SL   Y  ET  R+   LK +V+  +  V  PL+QLELI+ LQRLGL+YHFE E               + W+ ENLYAT+L+FRLLRQHGY VSQEVF+ FKD++  F   +C+D KG+LSL+EAS++ +EGE+I+EEA  F++KHL+E +  +  K     +A     +LE PLHW++P LEARWFI+
Sbjct:   27 LVTSRTRNGYLAR--PVQCMVANKVSTSPDILRRSANYQPSIWNHDYIESLRIEYVGETCTRQINVLKEQVRMMLHKVVNPLEQLELIEILQRLGLSYHFEEEIKRILDGVYNNDHGGDTWKAENLYATALKFRLLRQHGYSVSQEVFNSFKDERGSFKACLCEDTKGMLSLYEASFFLIEGENILEEARDFSTKHLEEYVKQNKEKN----LATLVNHSLEFPLHWRMPRLEARWFIN 259          
BLAST of DN617390 vs. ExPASy Swiss-Prot
Match: TPS2_CANSA ((+)-alpha-pinene synthase, chloroplastic OS=Cannabis sativa PE=1 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.710e-45
Identity = 104/226 (46.02%), Postives = 137/226 (60.62%), Query Frame = 3
Query:  141 PVQCLV--STKYDNLTVDRRSANYQPSIWDHDFLQSLNSNYTDETYKRRAEELKGKVKTAIKDVTEPLDQLELIDNLQRLGLAYHFEPEXXXXXXXXXXXXKDYNWRKENLYATSLEFRLLRQHGYPVSQEVFSGFKDD----KVGFICDDFKGILSLHEASYYSLEGESIMEEAWQFTSKHLKE--MMITSNSKEEDVFVAEQAKRALELPLHWKVPMLEARWFI 794
            P+QC +  S   D  T+ RRSANY P IW  DF+QSL   Y  E Y  R+ +LK +VK  +  +   L QLELID LQRLG++YHFE E                  K +LYAT+LEFRLLR++GY + QE+F+ FKD+    K     DD KG+L+L+EAS+Y   GE+I+EEA  FT+++LK   MMI  N    D  +A   + ALE+PLHW+    EA+WFI
Sbjct:   53 PIQCSLAKSPSSDTSTIVRRSANYDPPIWSFDFIQSLPCKYKGEPYTSRSNKLKEEVKKMLVGMENSLVQLELIDTLQRLGISYHFENEIISILKEYFTNISTNKNPKYDLYATALEFRLLREYGYAIPQEIFNDFKDETGKFKASIKNDDIKGVLALYEASFYVKNGENILEEARVFTTEYLKRYVMMIDQNIILND-NMAILVRHALEMPLHWRTIRAEAKWFI 277          
BLAST of DN617390 vs. ExPASy Swiss-Prot
Match: TPS1_CANSA ((-)-limonene synthase, chloroplastic OS=Cannabis sativa GN=TPS1 PE=1 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.956e-41
Identity = 105/275 (38.18%), Postives = 155/275 (56.36%), Query Frame = 3
Query:   15 TASVYPMSSCIN----PSTLATSVNGFKCLPLATNRAAIRIMAKNKPVQCLVSTKYDNLTV------DRRSANYQPSIWDHDFLQSLNSNYTDETYKRRAEELKGKVKTAIKDVTEPLDQLELIDNLQRLGLAYHFEPEXXXXXXXXXXXXKDYNWRKENLYATSLEFRLLRQHGYPVSQEVFSGFKDDKVG----FICDDFKGILSLHEASYYSLEGESIMEEAWQFTSKHLKEMMITSNSKEEDV-FVAEQAKRALELPLHWKVPMLEARWFI 794
            ++S  P+ S I+    P T  TS++  K  P   +++ ++  +++     +  T  DN +       DRRSANY P IW  DF+QSL   Y  E+Y  R  +L+  VK  +  V   L QLELID +QRLG++Y FE E             D      +LYAT+L+FRLLRQ+G+ V QE+F+ FK+ K G     I +D  G L L+EAS++  +GESI+EEA  FT+K LK+  + S+S   ++  ++     ALE+PL W++   EA+WFI
Sbjct:   11 SSSSLPIWSSIDNRFTPKTSITSIS--KPKPKLKSKSNLKSRSRSSTCYSIQCTVVDNPSSTITNNSDRRSANYGPPIWSFDFVQSLPIQYKGESYTSRLNKLEKDVKRMLIGVENSLAQLELIDTIQRLGISYRFENEIISILKEKFTNNNDNPNPNYDLYATALQFRLLRQYGFEVPQEIFNNFKNHKTGEFKANISNDIMGALGLYEASFHGKKGESILEEARIFTTKCLKKYKLMSSSNNNNMTLISLLVNHALEMPLQWRITRSEAKWFI 283          
BLAST of DN617390 vs. ExPASy Swiss-Prot
Match: OCIS_ARATH ((E)-beta-ocimene synthase, chloroplastic OS=Arabidopsis thaliana GN=TPS03 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.232e-36
Identity = 89/213 (41.78%), Postives = 125/213 (58.69%), Query Frame = 3
Query:  183 VDRRSANYQPSIWDHDFLQSLNSNYTDETYKRRAEELKGKVKTAIKDVTEPLDQLELIDNLQRLGLAYHFEPEXXXXXXXXXXXXK-------DYNWRKENLYATSLEFRLLRQHGYPVSQEVFSGFKDDKVGFICD--DFKGILSLHEASYYSLEGESIMEEAWQFTSKHLKEMMITSNSKEEDVFVAEQAKRALELPLHWKVPMLEARWFI 794
            V RRSANYQPS+W H++L SL + Y  E    R   LK +V   + +    L+QLELID LQRLG++YHFE E                    D N R  +LYAT+LEFRLLRQHG+ ++Q+VF G     +G   D  D KGILSL+EASY S   ++ ++E+  +T+K L++ +  + ++ +   +      ALE+P H +V  LEARW+I
Sbjct:   24 VSRRSANYQPSLWQHEYLLSLGNTYVKEDNVERVTLLKQEVSKMLNETEGLLEQLELIDTLQRLGVSYHFEQEIKKTLTNVHVKNVRAHKNRIDRN-RWGDLYATALEFRLLRQHGFSIAQDVFDG----NIGVDLDDKDIKGILSLYEASYLSTRIDTKLKESIYYTTKRLRKFVEVNKNETKSYTLRRMVIHALEMPYHRRVGRLEARWYI 231          
BLAST of DN617390 vs. ExPASy Swiss-Prot
Match: BPPS_SALOF ((+)-bornyl diphosphate synthase, chloroplastic OS=Salvia officinalis PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.232e-36
Identity = 94/258 (36.43%), Postives = 149/258 (57.75%), Query Frame = 3
Query:   45 INPSTLATSVNGFKCLPLATNRAA-IRIMAKNKPVQCLVSTKYDNLTVDRRSANYQPSIWDHDFLQSLNSNYTDETYKRRAEELKGKVKTAIKDVTEPLDQLELIDNLQRLGLAYHFEPEXXXXXXXXXXXXKDYN---WRKENLYATSLEFRLLRQHGYPVSQEVFSGFKDDK-VGF---ICDDFKGILSLHEASYYSLEGESIMEEAWQFTSKHLKEMMITSNSKEEDVFVAEQAKRALELPLHWKVPMLEARWFI 794
            +N S L+  +N    L    ++A  +   A    ++   S+K       RRS NYQP++WD +++QSLN+ YT+E +  R  EL  +V+  +K+  EP+ QLELI +L+ LGL+  F+ E            K ++     K +LY T+L FRLLRQHG+ +SQ+VF+ FK++K + F   +  D KG+L L+EAS+   +GE  +E A +F +K L++  +     E D  +    + +L+LPLHW++  +EARWFI
Sbjct:    6 MNVSILSKPLNCLHNLERRPSKALLVPCTAPTARLRASCSSKLQEAHQIRRSGNYQPALWDSNYIQSLNTPYTEERHLDRKAELIVQVRILLKEKMEPVQQLELIHDLKYLGLSDFFQDEIKEILGVIYNEHKCFHNNEVEKMDLYFTALGFRLLRQHGFNISQDVFNCFKNEKGIDFKASLAQDTKGMLQLYEASFLLRKGEDTLELAREFATKCLQK-KLDEGGNEIDENLLLWIRHSLDLPLHWRIQSVEARWFI 262          
BLAST of DN617390 vs. ExPASy Swiss-Prot
Match: SSS_SALOF ((+)-sabinene synthase, chloroplastic OS=Salvia officinalis PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.604e-35
Identity = 83/206 (40.29%), Postives = 126/206 (61.17%), Query Frame = 3
Query:  189 RRSANYQPSIWDHDFLQSLNSNYTDETYKRRAEELKGKVKTAIKDVTEPLDQLELIDNLQRLGLAYHFEPEXXXXXXXXXXXXKDYNWRKENLYATSLEFRLLRQHGYPVSQEVFSGFKDDKV----GFICDDFKGILSLHEASYYSLEGESIMEEAWQFTSKHLKEMMITSNSKEEDVFVAEQAKRALELPLHWKVPMLEARWFI 794
            RRS +YQPS+WD +++QSLN+ Y ++ +  R  EL  +V+  +K   E + QLELID+LQ LGL+Y F+ E            + ++    +LY T+L FR+LRQHG+ VS++VF  FK +K       +  D KG+L L+EAS+   EGE  +E A +F+++ L+E        E D  ++   + +L+LPLHW+V  LEARWF+
Sbjct:   52 RRSGDYQPSLWDFNYIQSLNTPYKEQRHFNRQAELIMQVRMLLKVKMEAIQQLELIDDLQYLGLSYFFQDEIKQILSSIHNEPRYFH--NNDLYFTALGFRILRQHGFNVSEDVFDCFKIEKCSDFNANLAQDTKGMLQLYEASFLLREGEDTLELARRFSTRSLRE-KFDEGGDEIDEDLSSWIRHSLDLPLHWRVQGLEARWFL 254          
BLAST of DN617390 vs. ExPASy Swiss-Prot
Match: CINS_ARATH (1,8-cineole synthase, chloroplastic OS=Arabidopsis thaliana GN=TPS27 PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.951e-34
Identity = 88/237 (37.13%), Postives = 138/237 (58.23%), Query Frame = 3
Query:  105 NRAAIRIMAKNKPVQCLVSTKYDNLTVDRRSANYQPSIWDHDFLQSLNSNYTDETYKRRAEELKGKVKTAIKDVTEP-LDQLELIDNLQRLGLAYHFEPEXXXXXXXXXXXXKDYNW---RKENLYATSLEFRLLRQHGYPVSQEVFSGFKD--DKVGFICDDFKGILSLHEASYYSLEGESIMEEAWQ-FTSKHLKEMMITSNSKEEDVFVAEQAKRALELPLHWKVPMLEARWFI 794
            +R   + M K  P   LV        + RRS NYQPS W+H +L S+ + Y  ET     + LK KVK+ + D  +  L+QLELID+LQ+LG++YHFE E                W   ++E+L+ATSLEFRLLRQHG+ VS+ +F    D  +   F  ++  GI+SL+EASY S + ++ + +  + F ++ +++ +   ++K  ++ V E+A  ALE+P HW++  L+ RW+I
Sbjct:   26 HRFVCKSMTKTTPDTTLVE-------LSRRSGNYQPSPWNHCYLLSIENKYASETEVITRDVLKKKVKSMLDDEKKSRLEQLELIDDLQKLGVSYHFEIEINDTLTDLHLKMGRNCWKCDKEEDLHATSLEFRLLRQHGFDVSENIFDVIIDQIESNTFKTNNINGIISLYEASYLSTKSDTKLHKVIRPFATEQIRKFVDDEDTK--NIEVREKAYHALEMPYHWRMRRLDTRWYI 253          
BLAST of DN617390 vs. ExPASy Swiss-Prot
Match: MYRS2_ARATH (Myrcene/ocimene synthase 2, chloroplastic OS=Arabidopsis thaliana GN=TPS24 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.368e-33
Identity = 80/214 (37.38%), Postives = 127/214 (59.35%), Query Frame = 3
Query:  177 LTVDRRSANYQPSIWDHDFLQSLNSNYTDETYKRRAEELKGKVKTAIKDVTEP--LDQLELIDNLQRLGLAYHFEPEXXXXXXXXXXXXKDYNWR---KENLYATSLEFRLLRQHGYPVSQEVFSGFKD--DKVGFICDDFKGILSLHEASYYSLEGESIMEEAWQ-FTSKHLKEMMITSNSKEEDVFVAEQAKRALELPLHWKVPMLEARWFI 794
            L + RRS NYQPS WDH +L S+ + Y +E        LK KVK  +++V     L++LELID+LQ+LG++YHFE E                W+   +E+L+AT+LEFRLLRQHG+ VS+++F    D  +   F  D+   I++L+EASY S + ++ + +  + F ++ ++   +   S+  ++ + E A  ALE+P HW++  LE RW+I
Sbjct:   43 LDLRRRSGNYQPSSWDHSYLLSIENKYVNEKEVITRHVLKKKVKKMLEEVETKSRLEKLELIDDLQKLGVSYHFEQEINNILTNFHLENGKNIWKCDKEEDLHATALEFRLLRQHGFGVSEDIFDVIIDKIESNTFKSDNITSIITLYEASYLSTKSDTKLHKVIRPFATEQIRNF-VDDESETYNIMLREMAIHALEIPYHWRMRRLETRWYI 255          
BLAST of DN617390 vs. ExPASy Swiss-Prot
Match: MYRS1_ARATH (Myrcene/ocimene synthase 1, chloroplastic OS=Arabidopsis thaliana GN=TPS10 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.831e-32
Identity = 81/208 (38.94%), Postives = 124/208 (59.62%), Query Frame = 3
Query:  180 TVDRRSANYQPSIWDHDFLQSLNSNYTDETYKRRAEELKGKVKTAIKDVTEP-LDQLELIDNLQRLGLAYHFEPEXXXXXXXXXXXXKDYNWRKENLYATSLEFRLLRQHGYPVSQEVFSGFKDDKVGFICDDFKGILSLHEASYYSLE-GESIMEEAWQFTSKHLKEMMIT-SNSKEEDVFVAEQAKRALELPLHWKVPMLEARWFI 794
            TV RRSANYQPS WDH  L S+ + +  +   R  + LK KV+  + D  +  LDQLE ID+LQ+LG++YHFE E            +  N ++ +L+AT+LEFRL RQHG+ VS++VF  F ++   F  DD  G++SL+EASY S +  +++      F ++ L++ + T SN       + E   +AL++P +W++  L  RW+I
Sbjct:   43 TVQRRSANYQPSRWDHHHLLSVENKFAKDKRVRERDLLKEKVRKMLNDEQKTYLDQLEFIDDLQKLGVSYHFEAEIDNILTSSYKKDRT-NIQESDLHATALEFRLFRQHGFNVSEDVFDVFMENCGKFDRDDIYGLISLYEASYLSTKLDKNLQIFIRPFATQQLRDFVDTHSNEDFGSCDMVEIVVQALDMPYYWQMRRLSTRWYI 249          
The following BLAST results are available for this feature:
BLAST of DN617390 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
RLC1_CITLI1.671e-12587.06(R)-limonene synthase 1 OS=Citrus limon PE=2 SV=1[more]
MYRS_QUEIL8.181e-5648.54Myrcene synthase, chloroplastic OS=Quercus ilex PE... [more]
TPS2_CANSA1.710e-4546.02(+)-alpha-pinene synthase, chloroplastic OS=Cannab... [more]
TPS1_CANSA1.956e-4138.18(-)-limonene synthase, chloroplastic OS=Cannabis s... [more]
OCIS_ARATH3.232e-3641.78(E)-beta-ocimene synthase, chloroplastic OS=Arabid... [more]
BPPS_SALOF3.232e-3636.43(+)-bornyl diphosphate synthase, chloroplastic OS=... [more]
SSS_SALOF1.604e-3540.29(+)-sabinene synthase, chloroplastic OS=Salvia off... [more]
CINS_ARATH3.951e-3437.131,8-cineole synthase, chloroplastic OS=Arabidopsis... [more]
MYRS2_ARATH4.368e-3337.38Myrcene/ocimene synthase 2, chloroplastic OS=Arabi... [more]
MYRS1_ARATH2.831e-3238.94Myrcene/ocimene synthase 1, chloroplastic OS=Arabi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01C07_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617390 ID=DN617390; Name=DN617390; organism=Citrus sinensis; type=EST; length=797bp
GTAAGCTAGCTTACACTGCATCTGTATATCCAATGTCTTCTTGCATTAAT
CCCTCAACCTTGGCTACCTCTGTAAATGGTTTCAAATGTCTTCCTCTTGC
AACAAATAGAGCAGCCATCAGAATCATGGCAAAAAATAAGCCAGTCCAAT
GCCTTGTCAGCACCAAATATGATAATTTGACAGTTGATAGGAGATCAGCA
AACTACCAACCTTCAATTTGGGACCATGATTTTTTGCAGTCACTGAATAG
CAACTATACGGATGAAACATACAAAAGACGAGCAGAAGAGCTGAAGGGAA
AAGTGAAGACAGCGATTAAGGATGTAACCGAGCCTCTGGATCAGTTGGAG
CTGATTGATAATTTGCAAAGACTTGGATTGGCTTATCATTTTGAGCCTGA
GATTCGGAACATATTGCGTAATATCCACAACCATAATAAAGATTATAATT
GGAGAAAAGAAAATCTGTATGCAACCTCCCTTGAATTCAGACTACTTAGA
CAACATGGCTATCCTGTTTCTCAAGAGGTTTTCAGTGGTTTTAAAGACGA
CAAGGTAGGCTTCATTTGTGATGATTTCAAGGGAATACTGAGCTTGCATG
AAGCCTCGTATTACAGCTTAGAAGGAGAAAGCATCATGGAGGAGGCCTGG
CAATTCACCAGTAAGCATCTTAAAGAAATGATGATCACCAGCAACAGCAA
GGAAGAGGATGTATTTGTAGCAGAACAAGCGAAGCGGGCGCTGGAGCTCC
CTCTGCATTGGAAAGTGCCTATGTTAGAGGCAAGGTGGTTCATACAC
back to top