DN134911

Overview
NameDN134911
Unique NameDN134911
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length629
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN134911 vs. ExPASy Swiss-Prot
Match: TRXH_RICCO (Thioredoxin H-type OS=Ricinus communis PE=3 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 5.189e-51
Identity = 95/107 (88.79%), Postives = 103/107 (96.26%), Query Frame = 3
Query:   96 CHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATAS 416
            CHTVEAWNEQLQK N+TK L+VVDFTASWCGPCRFIAPFLAELAKKLPNV FLKVDVDELK+VA +WAVE+MPTFMFLKEGKI+DKVVGAKK+ELQQTIAKH+ATAS
Sbjct:   11 CHTVEAWNEQLQKGNDTKGLIVVDFTASWCGPCRFIAPFLAELAKKLPNVTFLKVDVDELKTVAHEWAVESMPTFMFLKEGKIMDKVVGAKKDELQQTIAKHMATAS 117          
BLAST of DN134911 vs. ExPASy Swiss-Prot
Match: TRXH1_ARATH (Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TRX1 PE=1 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 2.847e-49
Identity = 91/104 (87.50%), Postives = 99/104 (95.19%), Query Frame = 3
Query:   96 CHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLA 407
            CHTVE WNEQLQK+NE+K LVVVDFTASWCGPCRFIAPF A+LAKKLPNVLFLKVD DELKSVA+DWA++AMPTFMFLKEGKI+DKVVGAKK+ELQ TIAKHLA
Sbjct:   11 CHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDELQSTIAKHLA 114          
BLAST of DN134911 vs. ExPASy Swiss-Prot
Match: TRXH2_TOBAC (Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 6.564e-46
Identity = 87/106 (82.08%), Postives = 97/106 (91.51%), Query Frame = 3
Query:   99 HTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATAS 416
            HTV+AWNE LQK  + K+L+VVDFTASWCGPC+FIA F AELAKK+P V FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKK+ELQQTIAKH+++ S
Sbjct:   11 HTVDAWNEHLQKGIDDKKLIVVDFTASWCGPCKFIASFYAELAKKMPTVTFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKDELQQTIAKHISSTS 116          
BLAST of DN134911 vs. ExPASy Swiss-Prot
Match: TRXH1_TOBAC (Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.159e-42
Identity = 79/107 (73.83%), Postives = 95/107 (88.79%), Query Frame = 3
Query:   96 CHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATAS 416
            CH VE WNE  +K  ETK+LVVVDFTASWCGPCRFIAP LA++AKK+P+V+FLKVDVDELK+V+ +W+VEAMPTF+F+K+GK VD+VVGAKKEELQQTI KH A A+
Sbjct:   17 CHKVEEWNEYFKKGVETKKLVVVDFTASWCGPCRFIAPILADIAKKMPHVIFLKVDVDELKTVSAEWSVEAMPTFVFIKDGKEVDRVVGAKKEELQQTIVKHAAPAT 123          
BLAST of DN134911 vs. ExPASy Swiss-Prot
Match: TRXH5_ARATH (Thioredoxin H-type 5 OS=Arabidopsis thaliana GN=TRX5 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.372e-35
Identity = 63/102 (61.76%), Postives = 87/102 (85.29%), Query Frame = 3
Query:   96 CHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKH 401
            CHT+E WNE+++ +NE+K+L+V+DFTASWC PCRFIAP  AE+AKK  NV+F K+DVDEL++VA ++ VEAMPTF+F+KEG I+D+VVGA K+E+ + + KH
Sbjct:   10 CHTLEVWNEKVKDANESKKLIVIDFTASWCPPCRFIAPVFAEMAKKFTNVVFFKIDVDELQAVAQEFKVEAMPTFVFMKEGNIIDRVVGAAKDEINEKLMKH 111          
BLAST of DN134911 vs. ExPASy Swiss-Prot
Match: TRXH_PICMA (Thioredoxin H-type OS=Picea mariana GN=SB09 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.981e-34
Identity = 64/107 (59.81%), Postives = 84/107 (78.50%), Query Frame = 3
Query:   96 CHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATAS 416
            CH+ E W  +LQ++ +TK+LV VDFTA+WCGPCR I P   EL+KK P + FLKVDVDEL+ VA +W VEAMPTF+F+K+GK VDKVVGAKK++L++ +A   A A+
Sbjct:    9 CHSTEGWRSKLQEAIDTKRLVAVDFTATWCGPCRVIGPVFVELSKKFPEIFFLKVDVDELRDVAQEWDVEAMPTFIFIKDGKAVDKVVGAKKDDLERKVAALAAAAT 115          
BLAST of DN134911 vs. ExPASy Swiss-Prot
Match: TRXH_FAGES (Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 3.736e-33
Identity = 61/102 (59.80%), Postives = 84/102 (82.35%), Query Frame = 3
Query:   96 CHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKH 401
            CHTV+ WNE+ QK+ ++ +L+V+DFTASWCGPCR I P+++ELAKK P+V F KVDVD+LK VA ++ VEAMP+F+ LKEG+ V+++VGA+K+EL   IA H
Sbjct:   10 CHTVQEWNEKFQKAKDSGKLIVIDFTASWCGPCRVITPYVSELAKKFPHVAFFKVDVDDLKDVAEEYKVEAMPSFVILKEGQEVERIVGARKDELLHKIAVH 111          
BLAST of DN134911 vs. ExPASy Swiss-Prot
Match: TRXH_ORYSJ (Thioredoxin H-type OS=Oryza sativa subsp. japonica GN=TRXH PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 6.373e-33
Identity = 63/108 (58.33%), Postives = 82/108 (75.93%), Query Frame = 3
Query:   96 CHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATASA 419
            CH  + ++ Q+ K+ E  ++V++DFTASWCGPCRFIAP  AE AKK P  +FLKVDVDELK VA  + VEAMPTF+F+K+G   DKVVGA+K++LQ TI KH+   +A
Sbjct:   11 CHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKHVGATAA 118          
BLAST of DN134911 vs. ExPASy Swiss-Prot
Match: TRXH_ORYSI (Thioredoxin H-type OS=Oryza sativa subsp. indica GN=TRXH PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 6.373e-33
Identity = 63/108 (58.33%), Postives = 82/108 (75.93%), Query Frame = 3
Query:   96 CHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATASA 419
            CH  + ++ Q+ K+ E  ++V++DFTASWCGPCRFIAP  AE AKK P  +FLKVDVDELK VA  + VEAMPTF+F+K+G   DKVVGA+K++LQ TI KH+   +A
Sbjct:   11 CHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKHVGATAA 118          
BLAST of DN134911 vs. ExPASy Swiss-Prot
Match: TRXH3_ARATH (Thioredoxin H-type 3 OS=Arabidopsis thaliana GN=TRX3 PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.163e-32
Identity = 63/108 (58.33%), Postives = 85/108 (78.70%), Query Frame = 3
Query:   96 CHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATASA 419
            CHTVE W E+L+ +NE+K+L+V+DFTA+WC PCRFIAP  A+LAKK  +V+F KVDVDEL +VA ++ V+AMPTF+F+KEG+I + VVGA KEE+   + KH    +A
Sbjct:   10 CHTVEDWTEKLKAANESKKLIVIDFTATWCPPCRFIAPVFADLAKKHLDVVFFKVDVDELNTVAEEFKVQAMPTFIFMKEGEIKETVVGAAKEEIIANLEKHKTVVAA 117          
The following BLAST results are available for this feature:
BLAST of DN134911 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 113
Match NameE-valueIdentityDescription
TRXH_RICCO5.189e-5188.79Thioredoxin H-type OS=Ricinus communis PE=3 SV=1[more]
TRXH1_ARATH2.847e-4987.50Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TR... [more]
TRXH2_TOBAC6.564e-4682.08Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=... [more]
TRXH1_TOBAC1.159e-4273.83Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=... [more]
TRXH5_ARATH1.372e-3561.76Thioredoxin H-type 5 OS=Arabidopsis thaliana GN=TR... [more]
TRXH_PICMA1.981e-3459.81Thioredoxin H-type OS=Picea mariana GN=SB09 PE=2 S... [more]
TRXH_FAGES3.736e-3359.80Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV... [more]
TRXH_ORYSJ6.373e-3358.33Thioredoxin H-type OS=Oryza sativa subsp. japonica... [more]
TRXH_ORYSI6.373e-3358.33Thioredoxin H-type OS=Oryza sativa subsp. indica G... [more]
TRXH3_ARATH3.163e-3258.33Thioredoxin H-type 3 OS=Arabidopsis thaliana GN=TR... [more]

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Properties
Property NameValue
Genbank descriptionwca03b08 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca03b08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134911 ID=DN134911; Name=DN134911; organism=Citrus sinensis; type=EST; length=629bp
TACGGCCGGGGNNNAATATCGTTGGGTGGAGTAGTGGTGGTAATAACCGC
GGANNGCAGAAATGGCAGCAGCAGAAGAGGGACAAGTCATNNNGGTGCCA
CACCGTTGAGGCCTGGAACGAGCAGCTCCAGAAGAGCAATGAAACCAAAC
AGCTGGTTGTTGTTGATTTCACTGCTTCATGGTGCGGACCATGCCGTTTC
ATTGCTCCTTTCTTGGCAGAGCTGGCCAAGAAACTGCCTAATGTCCTGTT
TCTGAAGGTTGATGTGGATGAACTGAAGAGTGTTGCCACTGACTGGGCAG
TGGAGGCCATGCCAACTTTCATGTTCCTGAAAGAGGGGAAGATTGTGGAC
AAGGTGGTTGGAGCAAAGAAAGAGGAACTGCAGCAGACTATTGCCAAGCA
TCTGGCAACTGCTTCTGCCTAATAAGTTATAACTATCCTCCTGCCTTTTG
GCTTTAGAGGCTATAGACCTCAATATATGCTATCAGTCTGTAATTTACTT
ATTAGAGTGGTTATGGGATTGTGTTTGTTTGTGTGTTTGAATATTCCGTA
ATTTACTGTTCCATGAAGCTCATACTGTGGTCTTTACAATAATTTAATTT
CATATTTGTTGTTGAACCTANNTTTGACG
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