CX043605

Overview
NameCX043605
Unique NameCX043605
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length850
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8331 contig Csv1_Contig8331:602..1452. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043605 vs. ExPASy Swiss-Prot
Match: HEM11_CUCSA (Glutamyl-tRNA reductase 1, chloroplastic OS=Cucumis sativus GN=HEMA1 PE=2 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 3.431e-71
Identity = 133/148 (89.86%), Postives = 141/148 (95.27%), Query Frame = -2
Query:  388 VYNVDDLKEVVAANKEDRLRKAMEAQAIISEESKQFAAWRDSLETVPTIKKLRAYAERIRVAELDKCLSKMGDDISKKTRRAVDDLSRGIVNKLLHGPMQHLRCDGSDSRTLDETLENMHALNRMFGLETDTSLFEQKVRAKIEQNQK 831
            VYNVDDLKEVVAANKEDRLRKAMEAQ+II+EESKQF AWRDSLETVPTIKKLRAYAERIR AEL+KCLSKMGDDI KKTRRAVDDLSRGIVNKLLHGPMQHLRCDGSDSRTL ETLENMHALNRMF LET+ ++ EQK+RAK+EQNQK
Sbjct:  405 VYNVDDLKEVVAANKEDRLRKAMEAQSIITEESKQFEAWRDSLETVPTIKKLRAYAERIRTAELEKCLSKMGDDIPKKTRRAVDDLSRGIVNKLLHGPMQHLRCDGSDSRTLSETLENMHALNRMFSLETEIAVLEQKIRAKVEQNQK 552          
BLAST of CX043605 vs. ExPASy Swiss-Prot
Match: HEM11_ARATH (Glutamyl-tRNA reductase 1, chloroplastic OS=Arabidopsis thaliana GN=HEMA1 PE=2 SV=2)

HSP 1 Score: 248.054 bits (632), Expect = 4.798e-65
Identity = 124/148 (83.78%), Postives = 135/148 (91.22%), Query Frame = -2
Query:  388 VYNVDDLKEVVAANKEDRLRKAMEAQAIISEESKQFAAWRDSLETVPTIKKLRAYAERIRVAELDKCLSKMGDDISKKTRRAVDDLSRGIVNKLLHGPMQHLRCDGSDSRTLDETLENMHALNRMFGLETDTSLFEQKVRAKIEQNQK 831
            VYNVDDLKEVVAANKEDR+RKAMEAQ II+EES QF AWRDSLETVPTIKKLRAYAERIRVAEL+KC+SKMGDDI+KKT RAVDDLSRGIVN+ LHGPMQHLRCDGSDSRTL ETLENMHALNRM+GLE D  + E+K++A  EQ QK
Sbjct:  398 VYNVDDLKEVVAANKEDRMRKAMEAQTIITEESTQFEAWRDSLETVPTIKKLRAYAERIRVAELEKCMSKMGDDINKKTTRAVDDLSRGIVNRFLHGPMQHLRCDGSDSRTLSETLENMHALNRMYGLEKD--ILEEKLKAMAEQQQK 543          
BLAST of CX043605 vs. ExPASy Swiss-Prot
Match: HEM12_HORVU (Glutamyl-tRNA reductase 2 (Fragment) OS=Hordeum vulgare GN=HEMA2 PE=2 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 3.218e-61
Identity = 112/148 (75.68%), Postives = 137/148 (92.57%), Query Frame = -2
Query:  391 VYNVDDLKEVVAANKEDRLRKAMEAQAIISEESKQFAAWRDSLETVPTIKKLRAYAERIRVAELDKCLSKMGDD-ISKKTRRAVDDLSRGIVNKLLHGPMQHLRCDGSDSRTLDETLENMHALNRMFGLETDTSLFEQKVRAKIEQNQ 831
            VYNVDDLKEVV ANKEDR+RKAMEAQAII++E K+F AWRDSLETVPTIKKLR+YA+RIR +ELDKCL K+G+D ++KKTRR++++LS GIVNKLLHGP+QHLRCDGSDSRTLDETL+NMHALNRMF L+T+ ++ EQK++AK+E+ Q
Sbjct:  317 VYNVDDLKEVVEANKEDRVRKAMEAQAIITQELKRFEAWRDSLETVPTIKKLRSYADRIRASELDKCLQKIGEDNLNKKTRRSIEELSTGIVNKLLHGPLQHLRCDGSDSRTLDETLDNMHALNRMFNLDTEKAVLEQKIKAKVEKTQ 464          
BLAST of CX043605 vs. ExPASy Swiss-Prot
Match: HEM1_ORYSJ (Glutamyl-tRNA reductase, chloroplastic OS=Oryza sativa subsp. japonica GN=Os10g0502400 PE=2 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 1.597e-60
Identity = 111/148 (75.00%), Postives = 136/148 (91.89%), Query Frame = -2
Query:  391 VYNVDDLKEVVAANKEDRLRKAMEAQAIISEESKQFAAWRDSLETVPTIKKLRAYAERIRVAELDKCLSKMGDD-ISKKTRRAVDDLSRGIVNKLLHGPMQHLRCDGSDSRTLDETLENMHALNRMFGLETDTSLFEQKVRAKIEQNQ 831
            VYNVDDLKEVV ANKEDRLRKAMEAQ II++E K+F AWRDSLETVPTIKKLR+YA+RIR +EL+KCL K+G+D ++KK RR++++LS GIVNKLLHGP+QHLRCDGSDSRTLDETLENMHALNRMF L+T+ ++ EQK++AK+E++Q
Sbjct:  389 VYNVDDLKEVVEANKEDRLRKAMEAQTIITQELKRFEAWRDSLETVPTIKKLRSYADRIRASELEKCLQKIGEDALTKKMRRSIEELSTGIVNKLLHGPLQHLRCDGSDSRTLDETLENMHALNRMFSLDTEKAIIEQKIKAKVEKSQ 536          
BLAST of CX043605 vs. ExPASy Swiss-Prot
Match: HEM1_ORYSI (Glutamyl-tRNA reductase, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_033071 PE=2 SV=2)

HSP 1 Score: 233.032 bits (593), Expect = 1.597e-60
Identity = 111/148 (75.00%), Postives = 136/148 (91.89%), Query Frame = -2
Query:  391 VYNVDDLKEVVAANKEDRLRKAMEAQAIISEESKQFAAWRDSLETVPTIKKLRAYAERIRVAELDKCLSKMGDD-ISKKTRRAVDDLSRGIVNKLLHGPMQHLRCDGSDSRTLDETLENMHALNRMFGLETDTSLFEQKVRAKIEQNQ 831
            VYNVDDLKEVV ANKEDRLRKAMEAQ II++E K+F AWRDSLETVPTIKKLR+YA+RIR +EL+KCL K+G+D ++KK RR++++LS GIVNKLLHGP+QHLRCDGSDSRTLDETLENMHALNRMF L+T+ ++ EQK++AK+E++Q
Sbjct:  389 VYNVDDLKEVVEANKEDRLRKAMEAQTIITQELKRFEAWRDSLETVPTIKKLRSYADRIRASELEKCLQKIGEDSLTKKMRRSIEELSTGIVNKLLHGPLQHLRCDGSDSRTLDETLENMHALNRMFSLDTEKAIIEQKIKAKVEKSQ 536          
BLAST of CX043605 vs. ExPASy Swiss-Prot
Match: HEM12_CUCSA (Glutamyl-tRNA reductase 2, chloroplastic OS=Cucumis sativus GN=HEMA2 PE=2 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 1.597e-60
Identity = 113/153 (73.86%), Postives = 131/153 (85.62%), Query Frame = -2
Query:  388 LKLHGVYNVDDLKEVVAANKEDRLRKAMEAQAIISEESKQFAAWRDSLETVPTIKKLRAYAERIRVAELDKCLSKMGDDISKKTRRAVDDLSRGIVNKLLHGPMQHLRCDGSDSRTLDETLENMHALNRMFGLETDTSLFEQKVRAKIEQNQK 846
            L+   V+NVDDLKEVVAANKEDRL+K  EAQ+II EE  +F AWRDSLETVPTIKK RAY ERIR AELDKCLSKMG+DI KK + A++DLS GI NKLLHGP+QHLRCDG+DSRTLDE L+NMHA+NRMF LETD S+ E+K+RAK+E+ QK
Sbjct:  390 LETVSVFNVDDLKEVVAANKEDRLKKVQEAQSIIGEEINKFEAWRDSLETVPTIKKFRAYVERIRAAELDKCLSKMGEDIPKKKKVAINDLSLGIANKLLHGPIQHLRCDGNDSRTLDEILQNMHAINRMFDLETDLSVLEEKIRAKVERGQK 542          
BLAST of CX043605 vs. ExPASy Swiss-Prot
Match: HEM11_HORVU (Glutamyl-tRNA reductase 1, chloroplastic OS=Hordeum vulgare GN=HEMA1 PE=1 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 6.070e-60
Identity = 110/148 (74.32%), Postives = 135/148 (91.22%), Query Frame = -2
Query:  391 VYNVDDLKEVVAANKEDRLRKAMEAQAIISEESKQFAAWRDSLETVPTIKKLRAYAERIRVAELDKCLSKMGDD-ISKKTRRAVDDLSRGIVNKLLHGPMQHLRCDGSDSRTLDETLENMHALNRMFGLETDTSLFEQKVRAKIEQNQ 831
            VYNVDDLKEVV ANKEDR+RKAMEAQ II++E K+F AWRDSLETVPTIKKLR+YA+RIR +EL+KCL K+G+D ++KK RR++++LS GIVNKLLHGP+QHLRCDGSDSRTLDETLENMHALNRMF L+T+ ++ EQK++AK+E+ Q
Sbjct:  379 VYNVDDLKEVVEANKEDRVRKAMEAQTIITQELKRFEAWRDSLETVPTIKKLRSYADRIRASELEKCLQKIGEDNLNKKMRRSIEELSTGIVNKLLHGPLQHLRCDGSDSRTLDETLENMHALNRMFSLDTEKAVLEQKIKAKVEKTQ 526          
BLAST of CX043605 vs. ExPASy Swiss-Prot
Match: HEM13_HORVU (Glutamyl-tRNA reductase 3, chloroplastic OS=Hordeum vulgare GN=HEMA3 PE=2 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 1.352e-59
Identity = 108/148 (72.97%), Postives = 134/148 (90.54%), Query Frame = -2
Query:  391 VYNVDDLKEVVAANKEDRLRKAMEAQAIISEESKQFAAWRDSLETVPTIKKLRAYAERIRVAELDKCLSKMGDD-ISKKTRRAVDDLSRGIVNKLLHGPMQHLRCDGSDSRTLDETLENMHALNRMFGLETDTSLFEQKVRAKIEQNQ 831
            VYNVDDLKEVV ANKEDRLRKAMEAQ IISEE K+F AWRDS+ETVPTIKKLR+YA+R+R +ELDKCL K+G+D ++KK RR+++ LS GIVN+LLHGP+QHLRCDG+D+RTLDETLENMHALNRMFGL+T+ ++ EQK++ K+E+ +
Sbjct:  385 VYNVDDLKEVVEANKEDRLRKAMEAQTIISEELKRFEAWRDSMETVPTIKKLRSYADRVRASELDKCLQKIGEDALTKKMRRSIEQLSTGIVNRLLHGPLQHLRCDGTDNRTLDETLENMHALNRMFGLDTEKAVMEQKIKTKVEKQK 532          
BLAST of CX043605 vs. ExPASy Swiss-Prot
Match: HEM12_ARATH (Glutamyl-tRNA reductase 2, chloroplastic OS=Arabidopsis thaliana GN=HEMA2 PE=2 SV=2)

HSP 1 Score: 218.779 bits (556), Expect = 3.117e-56
Identity = 108/145 (74.48%), Postives = 126/145 (86.90%), Query Frame = -2
Query:  397 VYNVDDLKEVVAANKEDRLRKAMEAQAIISEESKQFAAWRDSLETVPTIKKLRAYAERIRVAELDKCLSKMGDDISKKTRRAVDDLSRGIVNKLLHGPMQHLRCDGSDSRTLDETLENMHALNRMFGLETDTSLFEQKVRAKIEQ 831
            V+NVDDLKEVVAANKEDR+RKAM+AQAII++ESK F AWRDSLETVPTIKKLR Y ERI  AE++K L KMG D++KK R+ VDDL RGIVNKLLHGPMQHLRCDG+DSRTL ETL+NM ALNRM+GL  D  + E+K+RAK+E+
Sbjct:  387 VFNVDDLKEVVAANKEDRVRKAMDAQAIITDESKHFEAWRDSLETVPTIKKLRGYTERIIAAEIEKSLPKMGIDMNKKMRKTVDDLIRGIVNKLLHGPMQHLRCDGNDSRTLSETLDNMQALNRMYGL--DAEILEEKIRAKVEK 529          
BLAST of CX043605 vs. ExPASy Swiss-Prot
Match: HEM1_TRIEI (Glutamyl-tRNA reductase OS=Trichodesmium erythraeum (strain IMS101) GN=hemA PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.409e-24
Identity = 59/132 (44.70%), Postives = 83/132 (62.88%), Query Frame = -2
Query:  433 YNVDDLKEVVAANKEDRLRKAMEAQAIISEESKQFAAWRDSLETVPTIKKLRAYAERIRVAELDKCLSKMGDDISKKTRRAVDDLSRGIVNKLLHGPMQHLRCDGSDSRTLDETLENMHALNRMFGLETDTS 828
            +NVDDLK VVA N+E R + AMEA+ ++ EE + F  W  SLETVPTI  LR   E IR  EL+K LS++G + ++K +  ++ L+RGIVNK+LH PM  LR      + ++     M  L  +F LE++ S
Sbjct:  299 FNVDDLKAVVAQNRESRRQMAMEAEVLLEEEVEAFDVWWKSLETVPTINSLRQKIETIREQELEKALSRLGSEFAEKHQEVIEALTRGIVNKILHDPMVQLRA----QQDIEARRHAMETLQLLFNLESEMS 426          
The following BLAST results are available for this feature:
BLAST of CX043605 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
HEM11_CUCSA3.431e-7189.86Glutamyl-tRNA reductase 1, chloroplastic OS=Cucumi... [more]
HEM11_ARATH4.798e-6583.78Glutamyl-tRNA reductase 1, chloroplastic OS=Arabid... [more]
HEM12_HORVU3.218e-6175.68Glutamyl-tRNA reductase 2 (Fragment) OS=Hordeum vu... [more]
HEM1_ORYSJ1.597e-6075.00Glutamyl-tRNA reductase, chloroplastic OS=Oryza sa... [more]
HEM1_ORYSI1.597e-6075.00Glutamyl-tRNA reductase, chloroplastic OS=Oryza sa... [more]
HEM12_CUCSA1.597e-6073.86Glutamyl-tRNA reductase 2, chloroplastic OS=Cucumi... [more]
HEM11_HORVU6.070e-6074.32Glutamyl-tRNA reductase 1, chloroplastic OS=Hordeu... [more]
HEM13_HORVU1.352e-5972.97Glutamyl-tRNA reductase 3, chloroplastic OS=Hordeu... [more]
HEM12_ARATH3.117e-5674.48Glutamyl-tRNA reductase 2, chloroplastic OS=Arabid... [more]
HEM1_TRIEI2.409e-2444.70Glutamyl-tRNA reductase OS=Trichodesmium erythraeu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_12C02_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-12C02-E4-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043605 ID=CX043605; Name=CX043605; organism=Citrus sinensis; type=EST; length=850bp
TTTTTTTTTTTTTTTTTCGTGATACTGCAAAAGTTCTTTCATGGAGACCG
AAAGGGAAGAAATCCCCAACAAAGACATTTACACAAGCGTGTCTCTATAT
AATGAAGTACATTAATTACATGGATTTATAGTGGTTTCATCGGTACAAGG
ATCAGGCTCACCTCTATCCTAGGAGGTTGGAAGGCACCCAAATGAGAGTT
AGGAAAAAAGTGTCTTATAACAACACTTGACGAATTGAATGATCCCACAT
AGGGATCTACACTGTTATACTATTCAAATGAAGAATACAGCAATGCCGAG
ACTCACAACAAGGTGAGGACGTTTTCCTCTTATTCAATTGAGGAAGTGAA
TGAAGTGCCATTGACAAACTGGTATTCAAAAAGCTCACTTCTGGTTTTGT
TCTATCTTGGCTCGAACCTTTTGCTCGAAAAGAGATGTATCTGTTTCAAG
GCCAAACATTCTGTTTAGAGCATGCATGTTCTCAAGGGTCTCGTCTAGAG
TCCTGCTGTCACTCCCATCACATCTCAAGTGCTGCATTGGACCATGAAGA
AGCTTATTCACGATACCACGGCTAAGGTCATCGACAGCCCTCCTTGTTTT
CTTTGAGATATCATCACCCATCTTTGATAGGCATTTATCTAACTCTGCCA
CCCTGATTCTCTCAGCATAAGCTCTCAATTTCTTAATAGTAGGAACAGTC
TCCAATGAATCCCTCCAAGCTGCAAACTGTTTTGATTCCTCAGAAATAAT
AGCCTGAGCTTCCATTGCTTTTCGGAGCCTGTCCTCTTTATTAGCAGCCA
CTACCTCCTTAAGGTCATCAACATTGTAAACCCCGTGCAGTTTCAACATC
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