CN185735
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN185735 vs. ExPASy Swiss-Prot
Match: RK17_TOBAC (50S ribosomal protein L17, chloroplastic OS=Nicotiana tabacum GN=RPL17 PE=1 SV=1) HSP 1 Score: 245.743 bits (626), Expect = 1.797e-64 Identity = 121/161 (75.16%), Postives = 135/161 (83.85%), Query Frame = -2 Query: 172 RTQQAPHLFSSYMGLASNNPLLSLGFSDLTSFEHGLAFVDNGCRISAMRHGRRVPKLSRPPDQRRGLFGGLTTQLLKHGRIKTPRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRGGDNPPLAYIE 654 + + + L S++GLA +PLLSL D TSFEH +DNG R+ AMRHGR+VPKL+RPPDQRR L GLTTQLLKHGRIKT +ARA AVRKYVDKMIT+AKDGSLHKRRQALGFIYEKQIVHALFAEV +RYGERNGGYTRIIRTLPR GDN P+AYIE Sbjct: 43 KPKSSSRLLHSFVGLAPLHPLLSLSSQDSTSFEHSFTVIDNGGRVFAMRHGRKVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTKARARAVRKYVDKMITMAKDGSLHKRRQALGFIYEKQIVHALFAEVPDRYGERNGGYTRIIRTLPRRGDNAPMAYIE 203
BLAST of CN185735 vs. ExPASy Swiss-Prot
Match: RK17_ARATH (50S ribosomal protein L17, chloroplastic OS=Arabidopsis thaliana GN=RPL17 PE=2 SV=1) HSP 1 Score: 241.506 bits (615), Expect = 3.390e-63 Identity = 120/151 (79.47%), Postives = 131/151 (86.75%), Query Frame = -2 Query: 172 SYMGLASNNPLLSLGFSDLTSFEHGLAFVDNGCRISAMRHGRRVPKLSRPPDQRRGLFGGLTTQLLKHGRIKTPRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRGGDNPPLAYIE 624 S+ GL+ NPLLS+G D SFE+G VD G RI AMRHGRRVPKL+RPPDQR+ L GLTTQLLKHGRIKT RARASA+RK+VDKMITLAKDGSLHKRRQALG+IYEKQIVHALFAEV +RYGERNGGYTRIIRTLPR GDN P+AYIE Sbjct: 59 SFSGLSPVNPLLSIGLPDWQSFENGFKIVDGGGRIYAMRHGRRVPKLNRPPDQRKALLRGLTTQLLKHGRIKTTRARASAMRKFVDKMITLAKDGSLHKRRQALGYIYEKQIVHALFAEVPDRYGERNGGYTRIIRTLPRRGDNAPMAYIE 209
BLAST of CN185735 vs. ExPASy Swiss-Prot
Match: RL17_SYNP2 (50S ribosomal protein L17 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rplQ PE=3 SV=1) HSP 1 Score: 153.68 bits (387), Expect = 9.296e-37 Identity = 71/114 (62.28%), Postives = 93/114 (81.58%), Query Frame = -2 Query: 172 MRHGRRVPKLSRPPDQRRGLFGGLTTQLLKHGRIKTPRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRGGDNPPLAYIE 513 MRHG RVP+L RP DQR+ L LTTQL++HG++KT +ARA AVR VD+MITLAKDGSL RR+ALG++Y+K +VHALFA+ ++RYG+R GGY+R++RT+ R GDN +A IE Sbjct: 1 MRHGCRVPELGRPADQRKALLRALTTQLIRHGQVKTTKARAKAVRSEVDRMITLAKDGSLAARRRALGYMYDKDLVHALFAQAKDRYGDRQGGYSRVVRTVRRRGDNAEMAIIE 114
BLAST of CN185735 vs. ExPASy Swiss-Prot
Match: RL17_ACAM1 (50S ribosomal protein L17 OS=Acaryochloris marina (strain MBIC 11017) GN=rplQ PE=3 SV=1) HSP 1 Score: 153.68 bits (387), Expect = 9.296e-37 Identity = 75/114 (65.79%), Postives = 91/114 (79.82%), Query Frame = -2 Query: 172 MRHGRRVPKLSRPPDQRRGLFGGLTTQLLKHGRIKTPRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRGGDNPPLAYIE 513 MRH RV KL +P DQR+ L L+TQL++HGR+ T +ARA AVR V+KMITLAKDGSL RRQALG+IY+KQ+VHALF +V +RYG+RNGGYTRIIRT+ R GDN +A IE Sbjct: 1 MRHRCRVHKLGKPADQRKALLRSLSTQLIRHGRVTTTKARAKAVRSQVEKMITLAKDGSLASRRQALGYIYDKQLVHALFDQVADRYGDRNGGYTRIIRTIRRRGDNAEMAIIE 114
BLAST of CN185735 vs. ExPASy Swiss-Prot
Match: RL17_PROMT (50S ribosomal protein L17 OS=Prochlorococcus marinus (strain NATL2A) GN=rplQ PE=3 SV=1) HSP 1 Score: 153.295 bits (386), Expect = 1.214e-36 Identity = 70/114 (61.40%), Postives = 91/114 (79.82%), Query Frame = -2 Query: 172 MRHGRRVPKLSRPPDQRRGLFGGLTTQLLKHGRIKTPRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRGGDNPPLAYIE 513 MRH RR+P+LS P DQR+ L GLTTQL++ GR+ T +ARA A+R ++MITLAKDGSL RR+A+G++Y+KQ+VHALF + QERYG+R GGYTRI+RT PR GDN +A +E Sbjct: 1 MRHQRRIPQLSLPADQRKALLRGLTTQLIREGRVTTTKARAKALRNETERMITLAKDGSLASRRRAIGYVYDKQLVHALFEKAQERYGDREGGYTRIVRTTPRRGDNSEMAIVE 114
BLAST of CN185735 vs. ExPASy Swiss-Prot
Match: RL17_PROM1 (50S ribosomal protein L17 OS=Prochlorococcus marinus (strain NATL1A) GN=rplQ PE=3 SV=1) HSP 1 Score: 153.295 bits (386), Expect = 1.214e-36 Identity = 70/114 (61.40%), Postives = 91/114 (79.82%), Query Frame = -2 Query: 172 MRHGRRVPKLSRPPDQRRGLFGGLTTQLLKHGRIKTPRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRGGDNPPLAYIE 513 MRH RR+P+LS P DQR+ L GLTTQL++ GR+ T +ARA A+R ++MITLAKDGSL RR+A+G++Y+KQ+VHALF + QERYG+R GGYTRI+RT PR GDN +A +E Sbjct: 1 MRHQRRIPQLSLPADQRKALLRGLTTQLIREGRVTTTKARAKALRNETERMITLAKDGSLASRRRAIGYVYDKQLVHALFEKAQERYGDREGGYTRIVRTTPRRGDNSEMAIVE 114
BLAST of CN185735 vs. ExPASy Swiss-Prot
Match: RL17_THEEB (50S ribosomal protein L17 OS=Thermosynechococcus elongatus (strain BP-1) GN=rplQ PE=3 SV=1) HSP 1 Score: 151.754 bits (382), Expect = 3.532e-36 Identity = 73/114 (64.04%), Postives = 91/114 (79.82%), Query Frame = -2 Query: 172 MRHGRRVPKLSRPPDQRRGLFGGLTTQLLKHGRIKTPRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRGGDNPPLAYIE 513 MRH RRVP+L RP DQR+ L LTT+L++HGRI T +ARA AVR ++MITLAKDGSL RR+ALG++Y+KQ+VH+LFA+ ERYG+R GGYTRIIR++ R GDN LA IE Sbjct: 1 MRHQRRVPQLGRPADQRKALLRALTTELIRHGRITTTKARAKAVRAEAERMITLAKDGSLAARRRALGYLYDKQLVHSLFAQAPERYGDRQGGYTRIIRSVRRRGDNAELAVIE 114
BLAST of CN185735 vs. ExPASy Swiss-Prot
Match: RL17_SYNR3 (50S ribosomal protein L17 OS=Synechococcus sp. (strain RCC307) GN=rplQ PE=3 SV=1) HSP 1 Score: 151.369 bits (381), Expect = 4.614e-36 Identity = 72/114 (63.16%), Postives = 91/114 (79.82%), Query Frame = -2 Query: 172 MRHGRRVPKLSRPPDQRRGLFGGLTTQLLKHGRIKTPRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRGGDNPPLAYIE 513 MRH RVP+L RP DQR+ + GLTTQL++ GR+ T +ARA A+R ++MI+LAKDGSL RR+ALG+IY+KQ+VHALF + ERYG+RNGGYTRIIRT+PR GDN +A IE Sbjct: 1 MRHQCRVPQLGRPADQRKAMLRGLTTQLIREGRVTTTKARAKALRDETERMISLAKDGSLAARRRALGYIYDKQLVHALFDKASERYGDRNGGYTRIIRTVPRRGDNAEMAIIE 114
BLAST of CN185735 vs. ExPASy Swiss-Prot
Match: RL17_TRIEI (50S ribosomal protein L17 OS=Trichodesmium erythraeum (strain IMS101) GN=rplQ PE=3 SV=1) HSP 1 Score: 150.599 bits (379), Expect = 7.870e-36 Identity = 71/114 (62.28%), Postives = 90/114 (78.95%), Query Frame = -2 Query: 172 MRHGRRVPKLSRPPDQRRGLFGGLTTQLLKHGRIKTPRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRGGDNPPLAYIE 513 MRH RVPKL +P DQRR L L TQL++HG+IKT + RA AV+ V++MITLAKDGSL RR+ALG++Y+K++VH+LF E QERYG RNGGYTR++RT+ R GDN +A IE Sbjct: 1 MRHSCRVPKLGKPTDQRRALLRSLATQLIRHGQIKTTKPRAKAVQSEVERMITLAKDGSLAARRRALGYLYDKKLVHSLFNEAQERYGSRNGGYTRVLRTIRRRGDNAEMAIIE 114
BLAST of CN185735 vs. ExPASy Swiss-Prot
Match: RL17_PROMM (50S ribosomal protein L17 OS=Prochlorococcus marinus (strain MIT 9313) GN=rplQ PE=3 SV=1) HSP 1 Score: 150.599 bits (379), Expect = 7.870e-36 Identity = 71/114 (62.28%), Postives = 91/114 (79.82%), Query Frame = -2 Query: 172 MRHGRRVPKLSRPPDQRRGLFGGLTTQLLKHGRIKTPRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRGGDNPPLAYIE 513 MRH RVPKL RP DQR+ + GLTTQL++ GR+ T +ARA A+R ++MITLAK+GSL RR+A+G+IY+KQ+VHALF + Q+RYG+R GGYTRIIRT+PR GDN +A IE Sbjct: 1 MRHQCRVPKLGRPTDQRKAMLRGLTTQLIREGRVTTTKARAKALRDEAERMITLAKNGSLASRRRAIGYIYDKQLVHALFDKAQDRYGDRQGGYTRIIRTVPRRGDNAEMAIIE 114 The following BLAST results are available for this feature:
BLAST of CN185735 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CN185735 ID=CN185735; Name=CN185735; organism=Citrus sinensis; type=EST; length=718bpback to top |