DC887596

Overview
NameDC887596
Unique NameDC887596
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length634
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9646 contig Csv1_Contig9646:484..1118. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC887596 vs. ExPASy Swiss-Prot
Match: RL5_CUCSA (60S ribosomal protein L5 OS=Cucumis sativus GN=RPL5 PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 3.317e-53
Identity = 106/150 (70.67%), Postives = 116/150 (77.33%), Query Frame = -1
Query:  185 RPFPCXA*CWSCETTTGNRVFXXXXXXXXXXXDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLTYEERKARLVERLKALN 634
            RPF          TTTGNRVF           DIPHS+KRFAG++K+ +QLD EVHRKYI+ GHVAAYMRTLMEDEPEKYQSHF EYIK+GIEAD LE LYKKVHAAIRA+P  KKS+K  P  HKRYNLKKLTY+ERKARLVERL ALN
Sbjct:  139 RPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGYAKNGQQLDVEVHRKYIFGGHVAAYMRTLMEDEPEKYQSHFSEYIKKGIEADELEGLYKKVHAAIRANPIAKKSDKPQPKAHKRYNLKKLTYDERKARLVERLNALN 288          
BLAST of DC887596 vs. ExPASy Swiss-Prot
Match: RL52_ORYSJ (60S ribosomal protein L5-2 OS=Oryza sativa subsp. japonica GN=RPL5B PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 3.105e-51
Identity = 99/150 (66.00%), Postives = 113/150 (75.33%), Query Frame = -1
Query:  185 RPFPCXA*CWSCETTTGNRVFXXXXXXXXXXXDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLTYEERKARLVERLKALN 634
            RPF          TTTGNRVF           DIPHS+KRFAGF KD KQLD+++HRKYIY GHVA YMR++ E+EPEK+Q+HF EY+K+GI+AD +E LYKKVHAAIRADP   KS KK PA HKRYNLKKLTYE+RKA LVERL ALN
Sbjct:  140 RPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHFSEYLKKGIDADGMESLYKKVHAAIRADPTMAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNALN 289          
BLAST of DC887596 vs. ExPASy Swiss-Prot
Match: RL51_ORYSJ (60S ribosomal protein L5-1 OS=Oryza sativa subsp. japonica GN=RPL5A PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 4.055e-51
Identity = 99/150 (66.00%), Postives = 113/150 (75.33%), Query Frame = -1
Query:  185 RPFPCXA*CWSCETTTGNRVFXXXXXXXXXXXDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLTYEERKARLVERLKALN 634
            RPF          TTTGNRVF           DIPHS+KRFAGF KD KQLD+++HRKYIY GHVA YMR++ E+EPEK+Q+HF EY+K+GI+AD +E LYKKVHAAIRADP   KS KK PA HKRYNLKKLTYE+RKA LVERL ALN
Sbjct:  140 RPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHFSEYLKKGIDADGMEALYKKVHAAIRADPTMAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNALN 289          
BLAST of DC887596 vs. ExPASy Swiss-Prot
Match: RL51_ORYSI (60S ribosomal protein L5-1 OS=Oryza sativa subsp. indica GN=RPL5A PE=2 SV=2)

HSP 1 Score: 201.06 bits (510), Expect = 4.055e-51
Identity = 99/150 (66.00%), Postives = 113/150 (75.33%), Query Frame = -1
Query:  185 RPFPCXA*CWSCETTTGNRVFXXXXXXXXXXXDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLTYEERKARLVERLKALN 634
            RPF          TTTGNRVF           DIPHS+KRFAGF KD KQLD+++HRKYIY GHVA YMR++ E+EPEK+Q+HF EY+K+GI+AD +E LYKKVHAAIRADP   KS KK PA HKRYNLKKLTYE+RKA LVERL ALN
Sbjct:  140 RPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHFSEYLKKGIDADGMEALYKKVHAAIRADPTMAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNALN 289          
BLAST of DC887596 vs. ExPASy Swiss-Prot
Match: RL52_ARATH (60S ribosomal protein L5-2 OS=Arabidopsis thaliana GN=RPL5B PE=2 SV=3)

HSP 1 Score: 199.519 bits (506), Expect = 1.180e-50
Identity = 97/150 (64.67%), Postives = 115/150 (76.67%), Query Frame = -1
Query:  185 RPFPCXA*CWSCETTTGNRVFXXXXXXXXXXXDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLTYEERKARLVERLKALN 634
            RPF          TTTGNRVF           DIPHS+KRFAGF K++KQLDAE+HR YIY GHV+ YM+ L EDEPEK Q+HF  YIK+G+EA+++EE+YKKVHAAIRA+PN KK+EK  P EHKRYNLKKLTYEERK +L+ER+KALN
Sbjct:  139 RPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFHKENKQLDAEIHRNYIYGGHVSNYMKLLGEDEPEKLQTHFSAYIKKGVEAESIEEMYKKVHAAIRAEPNHKKTEKSAPKEHKRYNLKKLTYEERKNKLIERVKALN 288          
BLAST of DC887596 vs. ExPASy Swiss-Prot
Match: RL51_ARATH (60S ribosomal protein L5-1 OS=Arabidopsis thaliana GN=ATL5 PE=2 SV=2)

HSP 1 Score: 197.208 bits (500), Expect = 5.855e-50
Identity = 97/150 (64.67%), Postives = 114/150 (76.00%), Query Frame = -1
Query:  185 RPFPCXA*CWSCETTTGNRVFXXXXXXXXXXXDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLTYEERKARLVERLKALN 634
            RPF          TTTGNRVF           DIPHS+KRFAGF K++KQLDAE+HR YIY GHV+ YM+ L EDEPEK Q+HF  YIK+G+EA+++EELYKKVHAAIRADPN KK+ K  P +HKRYNLKKLTYEERK +L+ER+KALN
Sbjct:  139 RPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFHKENKQLDAEIHRNYIYGGHVSNYMKLLGEDEPEKLQTHFSAYIKKGVEAESIEELYKKVHAAIRADPNPKKTVKPAPKQHKRYNLKKLTYEERKNKLIERVKALN 288          
BLAST of DC887596 vs. ExPASy Swiss-Prot
Match: RL5_SOLME (60S ribosomal protein L5 (Fragment) OS=Solanum melongena GN=RPL5 PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 8.190e-44
Identity = 84/106 (79.25%), Postives = 92/106 (86.79%), Query Frame = -1
Query:  185 SKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLTYEERKARLVERLKALN 502
            SKDSKQLDAEVHRKYIY GHVAAYM  LMEDEPEKYQSHF  YIK  +  DN+EE+YKKVHAAIR DP+ KKS+K+PP  HKRYNLKKLTYEERKA+L+ERL ALN
Sbjct:    2 SKDSKQLDAEVHRKYIYGGHVAAYMNILMEDEPEKYQSHFSSYIKADLAPDNIEEMYKKVHAAIRPDPSPKKSQKQPPKTHKRYNLKKLTYEERKAKLIERLNALN 107          
BLAST of DC887596 vs. ExPASy Swiss-Prot
Match: RL5_LYSTE (60S ribosomal protein L5 OS=Lysiphlebus testaceipes GN=RpL5 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.771e-30
Identity = 68/146 (46.58%), Postives = 91/146 (62.33%), Query Frame = -1
Query:  191 FPCXA*CWSCETTTGNRVFXXXXXXXXXXXDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLTYEERKARLVERLKA 628
            F C        TTTG R+F           +IPHS KRF G+  +SK  +A+VHR++I+  H+A YM+TL E+EPE +Q  F +YIK GI AD +EE+YKK H AIRADP++ +  K      KR+N  KLT  ERK R V+++KA
Sbjct:  142 FRCYLDTGLMRTTTGARIFGAMKGAVDGGLNIPHSTKRFPGYDNESKSFNADVHRQHIFAHHIANYMKTLEENEPENFQRQFSQYIKNGITADGIEEMYKKAHEAIRADPDRAEIVKTKEPVKKRWNRAKLTLSERKDR-VKQIKA 286          
BLAST of DC887596 vs. ExPASy Swiss-Prot
Match: RL5_BOMMO (60S ribosomal protein L5 OS=Bombyx mori GN=RpL5 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.363e-29
Identity = 65/144 (45.14%), Postives = 90/144 (62.50%), Query Frame = -1
Query:  200 FPCXA*CWSCETTTGNRVFXXXXXXXXXXXDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSE-KKPPAEHKRYNLKKLTYEERKARLVER 628
            F C        TTTG RVF           ++PHS KRF G+  +SK+ +AEVHR +I+  HVA YMR+L +D+ + ++  F +YIK G+ AD +E +YKK H AIRADP+ KK E KK   + KR+N +KLT  ERK R+ ++
Sbjct:  142 FRCYLDVGLARTTTGRRVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQK 285          
BLAST of DC887596 vs. ExPASy Swiss-Prot
Match: RL5_NEUCR (60S ribosomal protein L5 OS=Neurospora crassa GN=rpl-5 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.269e-28
Identity = 69/156 (44.23%), Postives = 90/156 (57.69%), Query Frame = -1
Query:  188 RPFPCXA*CWSCETTTGNRVFXXXXXXXXXXXDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKP-------PAEHKRYNLKKLTYEERKARLVERLKAL 634
            RPF          T+TG RVF            IPHSE RF G+  +S++LDAE  +KYI+ GHVA YM TL +D+ E+Y+S F  YI+  +EAD LE+LY + HAAIR DP +K   + P        AE  +Y   KLT E+R A + ER+ AL
Sbjct:  143 RPFKAFLDVGLARTSTGARVFGAMKGASDGGIFIPHSENRFPGYDMESEELDAETLKKYIFGGHVAEYMETLADDDEERYKSQFNRYIEDDLEADGLEDLYAEAHAAIREDPFKKAESEAPKKTKEEWKAESLKYKKSKLTREQRAAGVQERIAAL 298          
The following BLAST results are available for this feature:
BLAST of DC887596 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
RL5_CUCSA3.317e-5370.6760S ribosomal protein L5 OS=Cucumis sativus GN=RPL... [more]
RL52_ORYSJ3.105e-5166.0060S ribosomal protein L5-2 OS=Oryza sativa subsp. ... [more]
RL51_ORYSJ4.055e-5166.0060S ribosomal protein L5-1 OS=Oryza sativa subsp. ... [more]
RL51_ORYSI4.055e-5166.0060S ribosomal protein L5-1 OS=Oryza sativa subsp. ... [more]
RL52_ARATH1.180e-5064.6760S ribosomal protein L5-2 OS=Arabidopsis thaliana... [more]
RL51_ARATH5.855e-5064.6760S ribosomal protein L5-1 OS=Arabidopsis thaliana... [more]
RL5_SOLME8.190e-4479.2560S ribosomal protein L5 (Fragment) OS=Solanum mel... [more]
RL5_LYSTE1.771e-3046.5860S ribosomal protein L5 OS=Lysiphlebus testaceipe... [more]
RL5_BOMMO4.363e-2945.1460S ribosomal protein L5 OS=Bombyx mori GN=RpL5 PE... [more]
RL5_NEUCR1.269e-2844.2360S ribosomal protein L5 OS=Neurospora crassa GN=r... [more]

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Properties
Property NameValue
Genbank descriptionDC887596 EIC Citrus sinensis cDNA clone EIC0608 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887596 ID=DC887596; Name=DC887596; organism=Citrus sinensis; type=EST; length=634bp
CTGGATTTCAGCAAACAACCAGGTCTCATCAGCATTTGAAAGCTCATAGA
AACAACACTGTTCTCAACCTATCAAACAAGCCAGGTTCTTTAATTTTAGT
AATCTCTGAAAATAACCTATTGAGCTAAGAAACAAAAACTTCCTAGTATC
GCATTCACTCATCGGCTTCATCGTCTTCAGCAGCATTGAGTGCTTTCAAC
CTTTCAACTAACCTGGCTTTCCTTTCCTCGTACGTCAGTTTCTTCAGGTT
GTACCTCTTGTGCTCTGCTGGAGGCTTCTTCTCAGATTTCTTCTGGTTAG
GGTCTGCACGGATGGCAGCATGTACCTTCTTGTACAACTCTTCAAGGTTA
TCAGCCTCAATACCTCTCTTGATGTATTCACAAAAGTGAGACTGGTACTT
CTCTGGCTCATCTTCCATCAAAGTCCTCATGTAGGCAGCGACATGACCAC
AATAGATGTATTTACGGTGAACTTCAGCGTCAAGTTGCTTACTATCCTTA
CTGAATCCAGCAAATCTCTTCTCACTGTGAGGGATATCAAGTCCACCATC
CAATGCACCCTTAAGAGCGCCAAAGACACGGTTACCAGTAGTTGTTTCAC
AAGACCAACATCAAGCANGGCACGGGAAAGGCCT
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