DC887596
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DC887596 vs. ExPASy Swiss-Prot
Match: RL5_CUCSA (60S ribosomal protein L5 OS=Cucumis sativus GN=RPL5 PE=2 SV=1) HSP 1 Score: 207.994 bits (528), Expect = 3.317e-53 Identity = 106/150 (70.67%), Postives = 116/150 (77.33%), Query Frame = -1 Query: 185 RPFPCXA*CWSCETTTGNRVFXXXXXXXXXXXDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLTYEERKARLVERLKALN 634 RPF TTTGNRVF DIPHS+KRFAG++K+ +QLD EVHRKYI+ GHVAAYMRTLMEDEPEKYQSHF EYIK+GIEAD LE LYKKVHAAIRA+P KKS+K P HKRYNLKKLTY+ERKARLVERL ALN Sbjct: 139 RPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGYAKNGQQLDVEVHRKYIFGGHVAAYMRTLMEDEPEKYQSHFSEYIKKGIEADELEGLYKKVHAAIRANPIAKKSDKPQPKAHKRYNLKKLTYDERKARLVERLNALN 288
BLAST of DC887596 vs. ExPASy Swiss-Prot
Match: RL52_ORYSJ (60S ribosomal protein L5-2 OS=Oryza sativa subsp. japonica GN=RPL5B PE=3 SV=1) HSP 1 Score: 201.445 bits (511), Expect = 3.105e-51 Identity = 99/150 (66.00%), Postives = 113/150 (75.33%), Query Frame = -1 Query: 185 RPFPCXA*CWSCETTTGNRVFXXXXXXXXXXXDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLTYEERKARLVERLKALN 634 RPF TTTGNRVF DIPHS+KRFAGF KD KQLD+++HRKYIY GHVA YMR++ E+EPEK+Q+HF EY+K+GI+AD +E LYKKVHAAIRADP KS KK PA HKRYNLKKLTYE+RKA LVERL ALN Sbjct: 140 RPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHFSEYLKKGIDADGMESLYKKVHAAIRADPTMAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNALN 289
BLAST of DC887596 vs. ExPASy Swiss-Prot
Match: RL51_ORYSJ (60S ribosomal protein L5-1 OS=Oryza sativa subsp. japonica GN=RPL5A PE=2 SV=1) HSP 1 Score: 201.06 bits (510), Expect = 4.055e-51 Identity = 99/150 (66.00%), Postives = 113/150 (75.33%), Query Frame = -1 Query: 185 RPFPCXA*CWSCETTTGNRVFXXXXXXXXXXXDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLTYEERKARLVERLKALN 634 RPF TTTGNRVF DIPHS+KRFAGF KD KQLD+++HRKYIY GHVA YMR++ E+EPEK+Q+HF EY+K+GI+AD +E LYKKVHAAIRADP KS KK PA HKRYNLKKLTYE+RKA LVERL ALN Sbjct: 140 RPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHFSEYLKKGIDADGMEALYKKVHAAIRADPTMAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNALN 289
BLAST of DC887596 vs. ExPASy Swiss-Prot
Match: RL51_ORYSI (60S ribosomal protein L5-1 OS=Oryza sativa subsp. indica GN=RPL5A PE=2 SV=2) HSP 1 Score: 201.06 bits (510), Expect = 4.055e-51 Identity = 99/150 (66.00%), Postives = 113/150 (75.33%), Query Frame = -1 Query: 185 RPFPCXA*CWSCETTTGNRVFXXXXXXXXXXXDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLTYEERKARLVERLKALN 634 RPF TTTGNRVF DIPHS+KRFAGF KD KQLD+++HRKYIY GHVA YMR++ E+EPEK+Q+HF EY+K+GI+AD +E LYKKVHAAIRADP KS KK PA HKRYNLKKLTYE+RKA LVERL ALN Sbjct: 140 RPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHFSEYLKKGIDADGMEALYKKVHAAIRADPTMAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNALN 289
BLAST of DC887596 vs. ExPASy Swiss-Prot
Match: RL52_ARATH (60S ribosomal protein L5-2 OS=Arabidopsis thaliana GN=RPL5B PE=2 SV=3) HSP 1 Score: 199.519 bits (506), Expect = 1.180e-50 Identity = 97/150 (64.67%), Postives = 115/150 (76.67%), Query Frame = -1 Query: 185 RPFPCXA*CWSCETTTGNRVFXXXXXXXXXXXDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLTYEERKARLVERLKALN 634 RPF TTTGNRVF DIPHS+KRFAGF K++KQLDAE+HR YIY GHV+ YM+ L EDEPEK Q+HF YIK+G+EA+++EE+YKKVHAAIRA+PN KK+EK P EHKRYNLKKLTYEERK +L+ER+KALN Sbjct: 139 RPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFHKENKQLDAEIHRNYIYGGHVSNYMKLLGEDEPEKLQTHFSAYIKKGVEAESIEEMYKKVHAAIRAEPNHKKTEKSAPKEHKRYNLKKLTYEERKNKLIERVKALN 288
BLAST of DC887596 vs. ExPASy Swiss-Prot
Match: RL51_ARATH (60S ribosomal protein L5-1 OS=Arabidopsis thaliana GN=ATL5 PE=2 SV=2) HSP 1 Score: 197.208 bits (500), Expect = 5.855e-50 Identity = 97/150 (64.67%), Postives = 114/150 (76.00%), Query Frame = -1 Query: 185 RPFPCXA*CWSCETTTGNRVFXXXXXXXXXXXDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLTYEERKARLVERLKALN 634 RPF TTTGNRVF DIPHS+KRFAGF K++KQLDAE+HR YIY GHV+ YM+ L EDEPEK Q+HF YIK+G+EA+++EELYKKVHAAIRADPN KK+ K P +HKRYNLKKLTYEERK +L+ER+KALN Sbjct: 139 RPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFHKENKQLDAEIHRNYIYGGHVSNYMKLLGEDEPEKLQTHFSAYIKKGVEAESIEELYKKVHAAIRADPNPKKTVKPAPKQHKRYNLKKLTYEERKNKLIERVKALN 288
BLAST of DC887596 vs. ExPASy Swiss-Prot
Match: RL5_SOLME (60S ribosomal protein L5 (Fragment) OS=Solanum melongena GN=RPL5 PE=2 SV=1) HSP 1 Score: 176.792 bits (447), Expect = 8.190e-44 Identity = 84/106 (79.25%), Postives = 92/106 (86.79%), Query Frame = -1 Query: 185 SKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLTYEERKARLVERLKALN 502 SKDSKQLDAEVHRKYIY GHVAAYM LMEDEPEKYQSHF YIK + DN+EE+YKKVHAAIR DP+ KKS+K+PP HKRYNLKKLTYEERKA+L+ERL ALN Sbjct: 2 SKDSKQLDAEVHRKYIYGGHVAAYMNILMEDEPEKYQSHFSSYIKADLAPDNIEEMYKKVHAAIRPDPSPKKSQKQPPKTHKRYNLKKLTYEERKAKLIERLNALN 107
BLAST of DC887596 vs. ExPASy Swiss-Prot
Match: RL5_LYSTE (60S ribosomal protein L5 OS=Lysiphlebus testaceipes GN=RpL5 PE=2 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 1.771e-30 Identity = 68/146 (46.58%), Postives = 91/146 (62.33%), Query Frame = -1 Query: 191 FPCXA*CWSCETTTGNRVFXXXXXXXXXXXDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLTYEERKARLVERLKA 628 F C TTTG R+F +IPHS KRF G+ +SK +A+VHR++I+ H+A YM+TL E+EPE +Q F +YIK GI AD +EE+YKK H AIRADP++ + K KR+N KLT ERK R V+++KA Sbjct: 142 FRCYLDTGLMRTTTGARIFGAMKGAVDGGLNIPHSTKRFPGYDNESKSFNADVHRQHIFAHHIANYMKTLEENEPENFQRQFSQYIKNGITADGIEEMYKKAHEAIRADPDRAEIVKTKEPVKKRWNRAKLTLSERKDR-VKQIKA 286
BLAST of DC887596 vs. ExPASy Swiss-Prot
Match: RL5_BOMMO (60S ribosomal protein L5 OS=Bombyx mori GN=RpL5 PE=2 SV=1) HSP 1 Score: 127.872 bits (320), Expect = 4.363e-29 Identity = 65/144 (45.14%), Postives = 90/144 (62.50%), Query Frame = -1 Query: 200 FPCXA*CWSCETTTGNRVFXXXXXXXXXXXDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSE-KKPPAEHKRYNLKKLTYEERKARLVER 628 F C TTTG RVF ++PHS KRF G+ +SK+ +AEVHR +I+ HVA YMR+L +D+ + ++ F +YIK G+ AD +E +YKK H AIRADP+ KK E KK + KR+N +KLT ERK R+ ++ Sbjct: 142 FRCYLDVGLARTTTGRRVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQK 285
BLAST of DC887596 vs. ExPASy Swiss-Prot
Match: RL5_NEUCR (60S ribosomal protein L5 OS=Neurospora crassa GN=rpl-5 PE=3 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 1.269e-28 Identity = 69/156 (44.23%), Postives = 90/156 (57.69%), Query Frame = -1 Query: 188 RPFPCXA*CWSCETTTGNRVFXXXXXXXXXXXDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKP-------PAEHKRYNLKKLTYEERKARLVERLKAL 634 RPF T+TG RVF IPHSE RF G+ +S++LDAE +KYI+ GHVA YM TL +D+ E+Y+S F YI+ +EAD LE+LY + HAAIR DP +K + P AE +Y KLT E+R A + ER+ AL Sbjct: 143 RPFKAFLDVGLARTSTGARVFGAMKGASDGGIFIPHSENRFPGYDMESEELDAETLKKYIFGGHVAEYMETLADDDEERYKSQFNRYIEDDLEADGLEDLYAEAHAAIREDPFKKAESEAPKKTKEEWKAESLKYKKSKLTREQRAAGVQERIAAL 298 The following BLAST results are available for this feature:
BLAST of DC887596 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 36
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >DC887596 ID=DC887596; Name=DC887596; organism=Citrus sinensis; type=EST; length=634bpback to top |