DC887468

Overview
NameDC887468
Unique NameDC887468
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length611
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887468 vs. ExPASy Swiss-Prot
Match: PUB33_ARATH (U-box domain-containing protein 33 OS=Arabidopsis thaliana GN=PUB33 PE=2 SV=2)

HSP 1 Score: 167.548 bits (423), Expect = 4.636e-41
Identity = 82/166 (49.40%), Postives = 109/166 (65.66%), Query Frame = -3
Query:  148 SFGLIILQLLTGRLPVGLAGEVRRAVSCGKLSSILDPLAGDWPTFVARRLVDLGLQCCELYGRERPDITPSLVKELEQLHVA------------EERPVPSFFLCPILQEIMHDPQVAADGFTYEGKAIRDWLENGRETSPMTNLRLSHLHLTPNHALRHAIQDWL 609
            SFG+I+L+LLTGR  + ++ EV+ A+  G L+ +LDPLAGDWP   A +L  L L+CCE     RPD+   + + LE +  +            E R  P +F+CPI QE+M DP VAADGFTYE +AIR WL++  +TSPMTN++LSH  L  NHALR AIQ+WL
Sbjct:  665 SFGIILLRLLTGRPALRISNEVKYALDNGTLNDLLDPLAGDWPFVQAEQLARLALRCCETVSENRPDLGTEVWRVLEPMRASSGGSSSFHLGRNEHRIAPPYFICPIFQEVMQDPHVAADGFTYEAEAIRAWLDSEHDTSPMTNVKLSHTSLIANHALRSAIQEWL 830          
BLAST of DC887468 vs. ExPASy Swiss-Prot
Match: PUB32_ARATH (U-box domain-containing protein 32 OS=Arabidopsis thaliana GN=PUB32 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.887e-34
Identity = 75/166 (45.18%), Postives = 103/166 (62.05%), Query Frame = -3
Query:  151 SFGLIILQLLTGRLPVGLAGEVRRAVSCGKLSSILDPLAGDWPTFVARRLVDLGLQCCELYGRERPDITPSL----------VKELEQLHVAEE---RPVPSFFLCPILQEIMHDPQVAADGFTYEGKAIRDWLENGRETSPMTNLRLSHLHLTPNHALRHAIQDW 609
            +FG+I+LQLLT R   G+  +V+ A+    +S++LD  AGDWP    ++L ++ ++CC+     RPD+   L          V   E    A +   R  PS +LCPI QE+M DP +AADGFTYE +AIR+WL NG +TSPMTNL++   +L PNHAL  AIQDW
Sbjct:  636 AFGIILLQLLTRRPVSGILRDVKCALENDNISAVLDNSAGDWPVARGKKLANVAIRCCKKNPMNRPDLAVVLRFIDRMKAPEVPSSETSSYANQNVPRRPPSHYLCPIFQEVMKDPLIAADGFTYEAEAIREWLANGHDTSPMTNLKMEDCNLIPNHALHLAIQDW 801          
BLAST of DC887468 vs. ExPASy Swiss-Prot
Match: PUB34_ARATH (U-box domain-containing protein 34 OS=Arabidopsis thaliana GN=PUB34 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 7.927e-33
Identity = 74/162 (45.68%), Postives = 95/162 (58.64%), Query Frame = -3
Query:  151 SFGLIILQLLTGRLPVGLAGEVRRAVSCGKLSSILDPLAGDWPTFVARRLVDLGLQCCELYGRERPDITPSLVKELEQLHVAEERPV---------PSFFLCPILQEIMHDPQVAADGFTYEGKAIRDWLENGRETSPMTNLRLSHLHLTPNHALRHAIQDW 609
            +FG+IILQLLT R P G+   V  AV  G L+ +LD    DWP      L  +GL+C E   R+RPD+   ++  L++L       V         PS + CPIL+EIM +P++AADGFTYE KAI  WLE     SP+T  +L H  LTPNH LR AI+DW
Sbjct:  630 AFGIIILQLLTARNPSGIVPAVENAVKKGTLTEMLDKSVTDWPLAETEELARIGLKCAEFRCRDRPDLKSEVIPVLKRLVETANSKVKKEGSNLRAPSHYFCPILREIMEEPEIAADGFTYERKAILAWLEK-HNISPVTRQKLDHFKLTPNHTLRSAIRDW 790          
BLAST of DC887468 vs. ExPASy Swiss-Prot
Match: PUB51_ARATH (U-box domain-containing protein 51 OS=Arabidopsis thaliana GN=PUB51 PE=2 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 4.071e-29
Identity = 66/169 (39.05%), Postives = 102/169 (60.36%), Query Frame = -3
Query:  151 SFGLIILQLLTGRLPVGLAGEVRRAV--SCGKLSSILDPLAGDWPTFVARRLVDLGLQCCELYGRERPDITPSLVKELEQLH--------------VAEERPVPSFFLCPILQEIMHDPQVAADGFTYEGKAIRDWLENGRETSPMTNLRLSHLHLTPNHALRHAIQDW 609
            +FG+I+LQL+T R  +GLA  + +A+    GK + ILD  AGDWP   A+ +V +GL+C E+  R+RPD+   ++  LE+L               +      P+ F CPI +++M +P VA+DG+TYE +AI++WL+   + SPMT+L      L PNH+L  AI++W
Sbjct:  623 AFGIILLQLVTARSAMGLAHSIEKALRDQTGKFTEILDKTAGDWPVKEAKEMVMIGLRCAEMRKRDRPDLGKEILPVLERLKEVASIARNMFADNLIDHHHNAPTHFYCPITKDVMENPCVASDGYTYEKRAIKEWLQKNHK-SPMTDLPFPSDSLLPNHSLLSAIKEW 790          
BLAST of DC887468 vs. ExPASy Swiss-Prot
Match: PUB53_ARATH (Putative U-box domain-containing protein 53 OS=Arabidopsis thaliana GN=PUB53 PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 6.944e-29
Identity = 69/166 (41.57%), Postives = 100/166 (60.24%), Query Frame = -3
Query:  151 SFGLIILQLLTGRLPVGLAGEVRRAVSCG---KLSSILDPLAGDWPTFVARRLVDLGLQCCELYGRERPDITPSLVKELEQLHVAEERP----------VPSFFLCPILQEIMHDPQVAADGFTYEGKAIRDWLENGRETSPMTNLRLSHLHLTPNHALRHAIQDW 609
            +FG+IILQLLTG+  + L   V  A+      +L  ILD  AG+WP    R+L  L LQC EL  ++RPD+   ++  LE L    ++            PS F CP+L+++M +P +AADG+TY+ +AI +W+EN R TSP+TN  L +++L PNH L  AI +W
Sbjct:  650 AFGMIILQLLTGQQAMALTYTVETAMENNNDDELIQILDEKAGNWPIEETRQLAALALQCTELRSKDRPDLEDQILPVLESLKKVADKARNSLSAAPSQPPSHFFCPLLKDVMKEPCIAADGYTYDRRAIEEWMENHR-TSPVTNSPLQNVNLLPNHTLYAAIVEW 814          
BLAST of DC887468 vs. ExPASy Swiss-Prot
Match: PUB50_ARATH (Putative U-box domain-containing protein 50 OS=Arabidopsis thaliana GN=PUB50 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.470e-26
Identity = 71/180 (39.44%), Postives = 100/180 (55.56%), Query Frame = -3
Query:  142 SFGLIILQLLTGRLPVGLAGEVRRAVSCGKLSSI--LDPLAGDWPTFVARRLVDLGLQCCELYGRERPDI-TPSLVKELEQLHV---------------------AEERPVPSFFLCPILQEIMHDPQVAADGFTYEGKAIRDWLENGRETSPMTNLRLSHLHLTPNHALRHAIQDWLCK 609
            +FG+++L LLTGR   GL     +A+S  + S +  LD  AG WP  +A+    L ++C  +      D  T  +++EL ++                        +   +PS F+CPILQE+M +P VAADGF+YE +AI++WL  G +TSPMTNLRL +  LTPNH LR  IQDW  K
Sbjct:  583 AFGVLLLHLLTGRNWHGLL----KAMSMNQTSILRDLDQTAGKWPLELAKEFGALAVKCSSVNRGGNMDFSTKEIMEELGKIREKADEFKTKGGYEEATNSNMDEGDPNDIPSVFMCPILQEVMKNPHVAADGFSYELEAIQEWLSMGHDTSPMTNLRLDYQMLTPNHTLRSLIQDWHSK 758          
BLAST of DC887468 vs. ExPASy Swiss-Prot
Match: PUB35_ARATH (U-box domain-containing protein 35 OS=Arabidopsis thaliana GN=PUB35 PE=1 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 5.502e-26
Identity = 67/164 (40.85%), Postives = 95/164 (57.93%), Query Frame = -3
Query:  151 SFGLIILQLLTGRLPVGLAGEVRRAV-SCGKLSSILDPLAGDWPTFVARRLVDLGLQCCELYGRERPDITPSLVKELEQLHVAEERPVPSF----------FLCPILQEIMHDPQVAADGFTYEGKAIRDWLENGRETSPMTNLRLSHLHLTPNHALRHAIQDW 609
            SFG+I+LQLLT +  + L   V  A+ S  +   ILD  AG+WP    R L  L L C EL G++RPD+   ++  LE L    E+   SF          F+CP+L+++M++P VAADG+TY+  AI +WL+    TSPMT+  L   +L PN+ L  AI +W
Sbjct:  669 SFGMILLQLLTAKPAIALTHFVESAMDSNDEFLKILDQKAGNWPIEETRELAALALCCTELRGKDRPDLKDQILPALENLKKVAEKARNSFSGVSTQPPTHFICPLLKDVMNEPCVAADGYTYDRHAIEEWLKE-HNTSPMTDSPLHSKNLLPNYTLYTAIMEW 831          
BLAST of DC887468 vs. ExPASy Swiss-Prot
Match: PUB52_ARATH (U-box domain-containing protein 52 OS=Arabidopsis thaliana GN=PUB52 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 9.385e-26
Identity = 62/164 (37.80%), Postives = 96/164 (58.54%), Query Frame = -3
Query:  151 SFGLIILQLLTGRLPVGLAGEVRRAVSC-GKLSSILDPLAGDWPTFVARRLVDLGLQCCELYGRERPDITPSLVKELEQLHVAEERPV----------PSFFLCPILQEIMHDPQVAADGFTYEGKAIRDWLENGRETSPMTNLRLSHLHLTPNHALRHAIQDW 609
            S G++ILQL+T +  + +   V  A+    +  +ILD  AG WP    R L  LGL C E+  R+RPD+   ++  LE+L    ++            PS F+CP+L+ +M++P VAADG+TY+ +AI +WL   ++TSP+TNL L + +L  N+ L  AI +W
Sbjct:  678 SLGVVILQLITAKPAIAITHMVEEAIGDDAEFMAILDKKAGSWPISDTRELAALGLCCTEMRRRDRPDLKDQIIPALERLRKVADKAQNLLSRTPSGPPSHFICPLLKGVMNEPCVAADGYTYDREAIEEWLRQ-KDTSPVTNLPLPNKNLIANYTLYSAIMEW 840          
BLAST of DC887468 vs. ExPASy Swiss-Prot
Match: PUB55_ARATH (Putative U-box domain-containing protein 55 OS=Arabidopsis thaliana GN=PUB55 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.019e-24
Identity = 47/70 (67.14%), Postives = 61/70 (87.14%), Query Frame = -3
Query:  148 RPVPSFFLCPILQEIMHDPQVAADGFTYEGKAIRDWLENGRETSPMTNLRLSHLHLTPNHALRHAIQDWL 357
            R  PS+F+CPI QE+M +P+VAADGFTYE +++R+WL+NG ETSPMTNL+L+H +L PNHALR AIQ+WL
Sbjct:  495 RQPPSYFICPISQEVMREPRVAADGFTYEAESLREWLDNGHETSPMTNLKLAHNNLVPNHALRSAIQEWL 564          
BLAST of DC887468 vs. ExPASy Swiss-Prot
Match: PUB36_ARATH (U-box domain-containing protein 36 OS=Arabidopsis thaliana GN=PUB36 PE=2 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 2.392e-21
Identity = 47/81 (58.02%), Postives = 55/81 (67.90%), Query Frame = -3
Query:  148 KELEQLHVAEERPVPSFFLCPILQEIMHDPQVAADGFTYEGKAIRDWLENGRETSPMTNLRLSHLHLTPNHALRHAIQDWL 390
            +E E+   +  R  P +F+CPI  +IM DP VAADGFTYEG+AI  W E G ETSPM N RL H  L PN ALR AIQ+WL
Sbjct:  340 REEEEASTSNHREPPQYFICPITHDIMEDPHVAADGFTYEGEAISRWFERGHETSPMINKRLPHTSLVPNLALRSAIQEWL 420          
The following BLAST results are available for this feature:
BLAST of DC887468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
PUB33_ARATH4.636e-4149.40U-box domain-containing protein 33 OS=Arabidopsis ... [more]
PUB32_ARATH1.887e-3445.18U-box domain-containing protein 32 OS=Arabidopsis ... [more]
PUB34_ARATH7.927e-3345.68U-box domain-containing protein 34 OS=Arabidopsis ... [more]
PUB51_ARATH4.071e-2939.05U-box domain-containing protein 51 OS=Arabidopsis ... [more]
PUB53_ARATH6.944e-2941.57Putative U-box domain-containing protein 53 OS=Ara... [more]
PUB50_ARATH2.470e-2639.44Putative U-box domain-containing protein 50 OS=Ara... [more]
PUB35_ARATH5.502e-2640.85U-box domain-containing protein 35 OS=Arabidopsis ... [more]
PUB52_ARATH9.385e-2637.80U-box domain-containing protein 52 OS=Arabidopsis ... [more]
PUB55_ARATH3.019e-2467.14Putative U-box domain-containing protein 55 OS=Ara... [more]
PUB36_ARATH2.392e-2158.02U-box domain-containing protein 36 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionDC887468 EIC Citrus sinensis cDNA clone EIC0410 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887468 ID=DC887468; Name=DC887468; organism=Citrus sinensis; type=EST; length=611bp
CCCCTGGATTGAGGCTATTCCTGAATAAGCACACTAGTTGCATGATATAC
AATGGACACACATGAATGTCTTGTAATGCAACTCTATACACACTAATAAC
ATGTAAACTACATACATATATGAATTCATGGGTATTCAAGATTTGCACAG
CCAGTCTTGAATCGCATGCCGCAAAGCATGATTGGGAGTTAGATGCAAGT
GACTGAGTCTCAAATTGGTCATAGGAGAAGTTTCACGGCCATTTTCCAAC
CAGTCACGAATGGCTTTCCCTTCATATGTGAATCCATCTGCTGCCACCTG
AGGGTCATGCATTATTTCCTGAAGAATGGGGCACAAAAAGAATGATGGAA
CCGGTCGTTCCTCTGCAACATGCAGCTGTTCCAATTCCTTTACCAGAGAT
GGTGTGATATCGGGTCGCTCCCTACCGTACAATTCACAGCATTGCAATCC
CAGGTCCACTAAACGCCTTGCAACAAACGTAGGCCAATCTCCAGCTAATG
GATCCAAAATGGATGATAACTTCCCGCACGACACAGCTCTTCGCACTTCA
CCTGCTAACCCAACTGGCAGCCTTCCAGTAAGTAGCTGTAGGATTATCAA
CCCAAAGGAGT
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