DC887405

Overview
NameDC887405
Unique NameDC887405
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length685
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3006 contig Csv1_Contig3006:552..1236. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC887405 vs. ExPASy Swiss-Prot
Match: RB11B_TOBAC (Ras-related protein Rab11B OS=Nicotiana tabacum GN=RAB11B PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.368e-42
Identity = 87/98 (88.78%), Postives = 95/98 (96.94%), Query Frame = -2
Query:  391 VIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALPKGQTINIGTKDDVSAVKKTGCCSA 684
            VIMLVGNKADLRHLRAVSTEDA++FAE+ENTFFMETSALESLNVENAFTEVLT+IY+VV RKAL+VGDDPAALPKGQTIN+G KDDVSAVKK GCCS+
Sbjct:  121 VIMLVGNKADLRHLRAVSTEDAKAFAERENTFFMETSALESLNVENAFTEVLTEIYKVVCRKALEVGDDPAALPKGQTINVG-KDDVSAVKKVGCCSS 217          
BLAST of DC887405 vs. ExPASy Swiss-Prot
Match: RIC2_ORYSJ (Ras-related protein RIC2 OS=Oryza sativa subsp. japonica GN=RIC2 PE=2 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 7.786e-30
Identity = 66/98 (67.35%), Postives = 83/98 (84.69%), Query Frame = -2
Query:  394 VIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALP-KGQTINIGTKDDVSAVKKTGCCS 684
            V+MLVGNK+DLRHL AV T++ ++FAE+E+ +FMETSALES NVENAF EVLTQIYR+VS+++++ GDD  + P KG+ INI  KDDVSAVKK GCCS
Sbjct:  121 VVMLVGNKSDLRHLVAVQTDEGKAFAERESLYFMETSALESTNVENAFAEVLTQIYRIVSKRSVEAGDDAGSGPGKGEKINI--KDDVSAVKKGGCCS 216          
BLAST of DC887405 vs. ExPASy Swiss-Prot
Match: YPT3_NICPL (Ras-related protein YPT3 OS=Nicotiana plumbaginifolia GN=YPT3 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.124e-28
Identity = 65/101 (64.36%), Postives = 83/101 (82.18%), Query Frame = -2
Query:  391 VIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPA---ALPKGQTINIGTKDDVSAVKKTGCCSA 684
            V+ML+GNK+DLRHL AVST++A+  AE+E  +FMETSALE+ NVENAFTE LTQIYR+VS+KA++ GD+ A   A PKG+TINI  KD+ S+ KK GCCS+
Sbjct:  120 VVMLIGNKSDLRHLVAVSTDEAKGLAEREGLYFMETSALEATNVENAFTEALTQIYRIVSKKAVEAGDEGATSSAPPKGETINI--KDEGSSWKKFGCCSS 218          
BLAST of DC887405 vs. ExPASy Swiss-Prot
Match: RB11D_LOTJA (Ras-related protein Rab11D OS=Lotus japonicus GN=RAB11D PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.124e-28
Identity = 65/100 (65.00%), Postives = 83/100 (83.00%), Query Frame = -2
Query:  394 VIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGD--DPAALP-KGQTINIGTKDDVSAVKKTGCCS 684
            V+ML+GNK+DLRHL AV TED +SFAE+E+ +FMETSALE+ NVENAFTEVLTQIYR+VS++A++ GD    + LP KGQTIN+  K+D S +K+ GCCS
Sbjct:  120 VVMLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLTQIYRIVSKRAVEAGDSGSSSGLPSKGQTINV--KEDSSVLKRFGCCS 217          
BLAST of DC887405 vs. ExPASy Swiss-Prot
Match: RAA1C_ARATH (Ras-related protein RABA1c OS=Arabidopsis thaliana GN=RABA1C PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.918e-28
Identity = 66/98 (67.35%), Postives = 80/98 (81.63%), Query Frame = -2
Query:  394 VIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALP-KGQTINIGTKDDVSAVKKTGCCS 684
            V+MLVGNK+DLRHL AV TEDA+SFAEKE+ +FMETSALE+ NVENAF EVLTQI+ +VS+KA++   + A +P KG  I+IG   DVSAVKK GCCS
Sbjct:  120 VVMLVGNKSDLRHLVAVQTEDAKSFAEKESLYFMETSALEATNVENAFAEVLTQIHHIVSKKAMEAASESANVPSKGDKIDIG--KDVSAVKKGGCCS 215          
BLAST of DC887405 vs. ExPASy Swiss-Prot
Match: RAA1B_ARATH (Ras-related protein RABA1b OS=Arabidopsis thaliana GN=RABA1B PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.623e-27
Identity = 62/98 (63.27%), Postives = 81/98 (82.65%), Query Frame = -2
Query:  394 VIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDD-PAALPKGQTINIGTKDDVSAVKKTGCCS 684
            V+MLVGNK+DLRHL AV TED +S+AE+E+  FMETSALE+ NVE+AF EVLTQIYR+ S+K ++ G+D  A++PKG+ I +  K+DVSA+KK GCCS
Sbjct:  120 VVMLVGNKSDLRHLLAVPTEDGKSYAEQESLCFMETSALEATNVEDAFAEVLTQIYRITSKKQVEAGEDGNASVPKGEKIEV--KNDVSALKKLGCCS 215          
BLAST of DC887405 vs. ExPASy Swiss-Prot
Match: RAA1A_ARATH (Ras-related protein RABA1a OS=Arabidopsis thaliana GN=RABA1A PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.623e-27
Identity = 60/98 (61.22%), Postives = 83/98 (84.69%), Query Frame = -2
Query:  394 VIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALP-KGQTINIGTKDDVSAVKKTGCCS 684
            V+ML+GNK DLRHL AV TE+A++FAE+E+ +FMETSAL++ NVENAFTEVLTQI+++VS++++D G + A LP KG+TIN+  K+D S +K+ GCCS
Sbjct:  120 VVMLIGNKCDLRHLVAVKTEEAKAFAERESLYFMETSALDATNVENAFTEVLTQIHKIVSKRSVDGGGESADLPGKGETINV--KEDGSVLKRMGCCS 215          
BLAST of DC887405 vs. ExPASy Swiss-Prot
Match: RB11E_LOTJA (Ras-related protein Rab11E OS=Lotus japonicus GN=RAB11E PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.999e-26
Identity = 59/100 (59.00%), Postives = 79/100 (79.00%), Query Frame = -2
Query:  394 VIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAAL---PKGQTINIGTKDDVSAVKKTGCCS 684
            V+ML+GNK+DLRHL  VSTED ++FAEKE+ +FMETSALE+ NVENAF+EVLTQIYR+VS++A++ GD P+      +GQTIN+   +D S + +  CCS
Sbjct:  120 VVMLIGNKSDLRHLVTVSTEDGKAFAEKESLYFMETSALEATNVENAFSEVLTQIYRIVSKRAVEAGDRPSTSVVPSQGQTINV--NEDSSVLNRYRCCS 217          
BLAST of DC887405 vs. ExPASy Swiss-Prot
Match: RAA2A_ARATH (Ras-related protein RABA2a OS=Arabidopsis thaliana GN=RABA2A PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.804e-22
Identity = 53/100 (53.00%), Postives = 75/100 (75.00%), Query Frame = -2
Query:  391 VIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKAL--DVGDDPAALPKGQTINIGTKDDVSAVKKTGCCSA 684
            VIML+GNK DL+HLRAV+TEDAQS+AEKE   F+ETSALE+LNVE AF  +L+++YR++S+K++  D     A + +GQTI++    + +A  K  CCS+
Sbjct:  119 VIMLIGNKTDLKHLRAVATEDAQSYAEKEGLSFIETSALEALNVEKAFQTILSEVYRIISKKSISSDQTTANANIKEGQTIDVAATSESNA--KKPCCSS 216          
BLAST of DC887405 vs. ExPASy Swiss-Prot
Match: YPT3_SCHPO (GTP-binding protein ypt3 OS=Schizosaccharomyces pombe GN=ypt3 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.739e-21
Identity = 53/97 (54.64%), Postives = 71/97 (73.20%), Query Frame = -2
Query:  397 VIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALPKGQTINIG-TKDDVSAVKKTGCC 684
            VIMLVGNK DL HLRAVSTE+AQ+FA + N  F+ETSA+++ NVE AF  VLT+I+R+VS ++L+ GDD      GQT+NI  T +D++  K +  C
Sbjct:  117 VIMLVGNKTDLLHLRAVSTEEAQAFAAENNLSFIETSAMDASNVEEAFQTVLTEIFRIVSNRSLEAGDDGVHPTAGQTLNIAPTMNDLNKKKSSSQC 213          
The following BLAST results are available for this feature:
BLAST of DC887405 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
RB11B_TOBAC1.368e-4288.78Ras-related protein Rab11B OS=Nicotiana tabacum GN... [more]
RIC2_ORYSJ7.786e-3067.35Ras-related protein RIC2 OS=Oryza sativa subsp. ja... [more]
YPT3_NICPL1.124e-2864.36Ras-related protein YPT3 OS=Nicotiana plumbaginifo... [more]
RB11D_LOTJA1.124e-2865.00Ras-related protein Rab11D OS=Lotus japonicus GN=R... [more]
RAA1C_ARATH1.918e-2867.35Ras-related protein RABA1c OS=Arabidopsis thaliana... [more]
RAA1B_ARATH1.623e-2763.27Ras-related protein RABA1b OS=Arabidopsis thaliana... [more]
RAA1A_ARATH1.623e-2761.22Ras-related protein RABA1a OS=Arabidopsis thaliana... [more]
RB11E_LOTJA3.999e-2659.00Ras-related protein Rab11E OS=Lotus japonicus GN=R... [more]
RAA2A_ARATH7.804e-2253.00Ras-related protein RABA2a OS=Arabidopsis thaliana... [more]
YPT3_SCHPO1.739e-2154.64GTP-binding protein ypt3 OS=Schizosaccharomyces po... [more]

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Properties
Property NameValue
Genbank descriptionDC887405 EIC Citrus sinensis cDNA clone EIC0327 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887405 ID=DC887405; Name=DC887405; organism=Citrus sinensis; type=EST; length=685bp
CGTTTAGGAACAGAATTATCTTAACATACTTCCCAAATTCCAGTCCTCAG
AAACCAAATATAAACTATCCTAGAGCTTAGGAGCTGATAACATACTACAA
TATTTTTTGGAGACAAACAGAGACAATACAATAAGAGAAAAACAGTAGGC
TCTTGCACAAACATGAGATCTCAGATCCAAATGATTATGGCTTTAACCTA
ACTCAAGCAAGATTTTGAGATTACCGGTACATGATGAAATGTAAAACTAT
AATTTCTTCCCGCACTCCATGTTGTCTCGTCCTGGCAAGCAGATCAAAGC
CAAGATGTCTCCAAGCCATGGAAATGTAAGTTCTAGAAAGAGGAGAAACT
ATTTTTTAGCACCTGGATTTTCCTTCGAAGCTGCAGATTATGCAGAGCAG
CACCCAGTCTTTTTCACAGCCGATACATCATCTTTAGTACCAATATTAAT
AGTTTGACCCTTGGGCAAGGCTGCTGGGTCATCACCTACATCAAGAGCCT
TCCTGCTAACAACTCGATATATCTGAGTGAGCACTTCGGTGAAGGCATTT
TCAACATTCAACGACTCTAGGGCAGAGGTTTCCATGAAGAAAGTGTTCTC
TTTCTCAGCGAACGACTGAGCATCCTCAGTTGAAACAGCACGCAAGTGAC
GCAAATCAGCCTTGTTACCCACAAGCATTATCACA
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