CN189077

Overview
NameCN189077
Unique NameCN189077
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length626
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13818 contig Csv1_Contig13818:321..946. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189077 vs. ExPASy Swiss-Prot
Match: SND1_RAT (Staphylococcal nuclease domain-containing protein 1 OS=Rattus norvegicus GN=Snd1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.557e-14
Identity = 58/172 (33.72%), Postives = 87/172 (50.58%), Query Frame = -3
Query:   88 EKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSST--PPLAQLCSLAYIKIPALEDEYGPEAAEFLNEHTYNSSNEFRALVEERDSSXXXXXXXXXXXXLHVTLVAVDAEISINTLMVQEGLARVERRKRWGSRDRQAALENLEKFQEEAKTARIGMWQYGDIQSDDED 597
            EKVES   K  VFYIDYGN+E++P  +L  + P+ S+   P  A   + A+I++P  ED    +A + +     N+       VE   +S             HVTL   D++  +   +V+EGL  VE RK    +  Q  +      QE AK+AR+ +W+YGD ++DD D
Sbjct:  750 EKVESPA-KVHVFYIDYGNREILPSTRLGALPPAFSTRVLPAQATEYAFAFIQVPQDEDAR-TDAVDSVVRDIQNTQCLLN--VEHLSASCP-----------HVTLQFADSKGDVGLGLVKEGLVMVEVRKE---KQFQKVITEYLNAQESAKSARLNLWRYGDFRADDAD 903          
BLAST of CN189077 vs. ExPASy Swiss-Prot
Match: SND1_MOUSE (Staphylococcal nuclease domain-containing protein 1 OS=Mus musculus GN=Snd1 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.557e-14
Identity = 58/172 (33.72%), Postives = 87/172 (50.58%), Query Frame = -3
Query:   88 EKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSST--PPLAQLCSLAYIKIPALEDEYGPEAAEFLNEHTYNSSNEFRALVEERDSSXXXXXXXXXXXXLHVTLVAVDAEISINTLMVQEGLARVERRKRWGSRDRQAALENLEKFQEEAKTARIGMWQYGDIQSDDED 597
            EKVES   K  VFYIDYGN+E++P  +L  + P+ S+   P  A   + A+I++P  ED    +A + +     N+       VE   +S             HVTL   D++  +   +V+EGL  VE RK    +  Q  +      QE AK+AR+ +W+YGD ++DD D
Sbjct:  751 EKVESPA-KVHVFYIDYGNREILPSTRLGTLPPAFSTRVLPAQATEYAFAFIQVPQDEDAR-TDAVDSVVRDIQNTQCLLN--VEHLSASCP-----------HVTLQFADSKGDVGLGLVKEGLVMVEVRKE---KQFQKVITEYLNAQESAKSARLNLWRYGDFRADDAD 904          
BLAST of CN189077 vs. ExPASy Swiss-Prot
Match: SND1_HUMAN (Staphylococcal nuclease domain-containing protein 1 OS=Homo sapiens GN=SND1 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.557e-14
Identity = 56/172 (32.56%), Postives = 88/172 (51.16%), Query Frame = -3
Query:   88 EKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSS--TPPLAQLCSLAYIKIPALEDEYGPEAAEFLNEHTYNSSNEFRALVEERDSSXXXXXXXXXXXXLHVTLVAVDAEISINTLMVQEGLARVERRKRWGSRDRQAALENLEKFQEEAKTARIGMWQYGDIQSDDED 597
            EKVES   K  VFYIDYGN+E++P  +L  + P+ S+   P  A   + A+I++P  +D+   +A + +     N+    + L+     S             HVTL   D++  +   +V+EGL  VE RK    +  Q  +      QE AK+AR+ +W+YGD ++DD D
Sbjct:  751 EKVESPA-KIHVFYIDYGNREVLPSTRLGTLSPAFSTRVLPAQATEYAFAFIQVPQ-DDDARTDAVDSVVRDIQNT----QCLLNVEHLS---------AGCPHVTLQFADSKGDVGLGLVKEGLVMVEVRK---EKQFQKVITEYLNAQESAKSARLNLWRYGDFRADDAD 904          
BLAST of CN189077 vs. ExPASy Swiss-Prot
Match: SND1_PONAB (Staphylococcal nuclease domain-containing protein 1 OS=Pongo abelii GN=SND1 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.564e-14
Identity = 56/172 (32.56%), Postives = 88/172 (51.16%), Query Frame = -3
Query:   88 EKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSS--TPPLAQLCSLAYIKIPALEDEYGPEAAEFLNEHTYNSSNEFRALVEERDSSXXXXXXXXXXXXLHVTLVAVDAEISINTLMVQEGLARVERRKRWGSRDRQAALENLEKFQEEAKTARIGMWQYGDIQSDDED 597
            EKVES   K  VFYIDYGN+E++P  +L  + P+ S+   P  A   + A+I++P  +D+   +A + +     N+    + L+     S             HVTL   D++  +   +V+EGL  VE RK    +  Q  +      QE AK+AR+ +W+YGD ++DD D
Sbjct:  751 EKVESPA-KIHVFYIDYGNREVLPSTRLGTLPPAFSTRVLPAQATEYAFAFIQVPQ-DDDARTDAVDSVVRDIQNT----QCLLNVEHLS---------AGCPHVTLQFADSKGDVGLGLVKEGLVMVEVRK---EKQFQKVITEYLNAQESAKSARLNLWRYGDFRADDAD 904          
BLAST of CN189077 vs. ExPASy Swiss-Prot
Match: SND1_BOVIN (Staphylococcal nuclease domain-containing protein 1 OS=Bos taurus GN=SND1 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.461e-13
Identity = 57/172 (33.14%), Postives = 87/172 (50.58%), Query Frame = -3
Query:   88 EKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSST--PPLAQLCSLAYIKIPALEDEYGPEAAEFLNEHTYNSSNEFRALVEERDSSXXXXXXXXXXXXLHVTLVAVDAEISINTLMVQEGLARVERRKRWGSRDRQAALENLEKFQEEAKTARIGMWQYGDIQSDDED 597
            EKVES   K  VFYIDYGN+E++P  +L  + P+ S+   P  A   + A+I++P  ED    +A + +     N+    + L+     S             HVTL   D++  +   +V+EGL  VE RK    +  Q  +      QE AK+AR+ +W+YGD ++DD D
Sbjct:  751 EKVESPA-KVHVFYIDYGNREILPSTRLGTLPPAFSTRVLPAQATEYAFAFIQVPQDEDAR-TDAVDSVVRDIQNT----QCLLNVEHLSAGCP---------HVTLQFADSKGDVGLGLVKEGLVMVEVRKE---KQFQKVITEYLNAQESAKSARLNLWRYGDFRADDAD 904          
The following BLAST results are available for this feature:
BLAST of CN189077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
SND1_RAT6.557e-1433.72Staphylococcal nuclease domain-containing protein ... [more]
SND1_MOUSE6.557e-1433.72Staphylococcal nuclease domain-containing protein ... [more]
SND1_HUMAN6.557e-1432.56Staphylococcal nuclease domain-containing protein ... [more]
SND1_PONAB8.564e-1432.56Staphylococcal nuclease domain-containing protein ... [more]
SND1_BOVIN1.461e-1333.14Staphylococcal nuclease domain-containing protein ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0001E13_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001E13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189077 ID=CN189077; Name=CN189077; organism=Citrus sinensis; type=EST; length=626bp
CTTTTTTTTTCATTACACTTCTGGTACATTATATGATCATGTTCATCGCC
TGCCTCCAGCAACCTTTCTCACAGCAGAAGGTAATGGGTCCTCATCATCA
GACTGAATATCTCCATACTGCCACATCCCAATCCTAGCAGTCTTAGCTTC
TTCCTGGAATTTTTCAAGATTCTCAAGGGCAGCCTGTCTGTCTCTGGATC
CCCATCTCTTCCTCCTCTCTACCCTTGCAAGTCCTTCCTGAACCATAAGA
GTATTTATGCTAATCTCAGCATCCACAGCAACCAGAGTTACATGAAGAAG
TGTCCCAGTTCCCTGTCCCTTGAGTTTTCCTCCAGAAGAATCCCTTTCTT
CCACTAAGGCCCTAAATTCATTTGAACTGTTATACGTATGTTCATTCAAG
AACTCAGCTGCTTCAGGACCATACTCATCTTCCAAGGCAGGAATCTTGAT
GTAGGCAAGGCTGCATAGCTGAGCAAGAGGTGGTGTCGACGATAATGATG
GATCAATAGGCCTCAGCTTATTGTATGGAACCAACTCTTGATTTCCATAA
TCAATATAGAATACTTCAAATTTGTCGTTTACAGATTCAACCTTCTCCCG
AGGTGCATTGACAATCATAGCTCGAT
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