CN181874

Overview
NameCN181874
Unique NameCN181874
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length713
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181874 vs. ExPASy Swiss-Prot
Match: COPZ1_ARATH (Coatomer subunit zeta-1 OS=Arabidopsis thaliana GN=At1g60970 PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.243e-51
Identity = 104/142 (73.24%), Postives = 116/142 (81.69%), Query Frame = -2
Query:  287 EAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEAXXXXXXXXXXXXXIVDGGIILETDANVIAGKVASHSVDVGAPLSEQTISQALATAREHLTRSLLK 712
            EAFEK+VFTKTQKTNARTE E+  LE N++VYKFVQDLHFFVTGGE+ENELILA+VL+G FDAV LLLR NVDK+EA             I+DGGI+LETDANVIAGK   +S D  APLSEQTISQALATAREHLTRSL+K
Sbjct:   36 EAFEKSVFTKTQKTNARTEVEVTALENNIVVYKFVQDLHFFVTGGEEENELILASVLEGLFDAVTLLLRSNVDKREALDNLDLIFLSFDEIIDGGIVLETDANVIAGKAGINSTDPNAPLSEQTISQALATAREHLTRSLMK 177          
BLAST of CN181874 vs. ExPASy Swiss-Prot
Match: COPZ2_ORYSJ (Coatomer subunit zeta-2 OS=Oryza sativa subsp. japonica GN=COPZ2 PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.321e-48
Identity = 100/141 (70.92%), Postives = 115/141 (81.56%), Query Frame = -2
Query:  287 AFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEAXXXXXXXXXXXXXIVDGGIILETDANVIAGKVASHSVDVGAPLSEQTISQALATAREHLTRSLLK 709
            AFEK+VFTKT KTNAR+EAEI + +G ++VYKFVQDLHFFVT G+DENELI+A VLQGF D+VGLLLRG+V+K+ A             IVDGGIILETDAN IAGKVA+++VD  AP SEQTISQALATAREHL RSLLK
Sbjct:   42 AFEKSVFTKTLKTNARSEAEITLFDGYIVVYKFVQDLHFFVTAGDDENELIIANVLQGFSDSVGLLLRGDVEKRTALENLDLILLCIDEIVDGGIILETDANTIAGKVATNAVDGSAPFSEQTISQALATAREHLARSLLK 182          
BLAST of CN181874 vs. ExPASy Swiss-Prot
Match: COPZ3_ARATH (Coatomer subunit zeta-3 OS=Arabidopsis thaliana GN=At4g08520 PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.172e-46
Identity = 95/140 (67.86%), Postives = 110/140 (78.57%), Query Frame = -2
Query:  290 AFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEAXXXXXXXXXXXXXIVDGGIILETDANVIAGKVASHSVDVGAPLSEQTISQALATAREHLTRSLL 709
            AFEK VF+KT KTNARTEAEI +LE N++VYKF QDLHFFVTGGE+ENEL+L++VLQGFFDAV LLLR NV+K EA             +VD G++LETDANVIAGKVA  S +    LSEQT++QALATAREHL RSLL
Sbjct:   41 AFEKYVFSKTSKTNARTEAEITLLESNIVVYKFAQDLHFFVTGGENENELVLSSVLQGFFDAVALLLRNNVEKMEALENLDLIFLCLDEMVDQGMVLETDANVIAGKVAMQSAEASGSLSEQTLTQALATAREHLARSLL 180          
BLAST of CN181874 vs. ExPASy Swiss-Prot
Match: COPZ2_ARATH (Coatomer subunit zeta-2 OS=Arabidopsis thaliana GN=At3g09800 PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 6.320e-46
Identity = 95/140 (67.86%), Postives = 109/140 (77.86%), Query Frame = -2
Query:  290 AFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEAXXXXXXXXXXXXXIVDGGIILETDANVIAGKVASHSVDVGAPLSEQTISQALATAREHLTRSLL 709
            +FEK VF+KT KTNARTEAEI +L+ N+IVYKF QDLHFFVTGGE+ENELILA+VLQGFFDAV LLLR NV+K EA             +VD G++LETD NVIAGKVA  S +    LSEQT++QALATAREHL RSLL
Sbjct:   39 SFEKYVFSKTSKTNARTEAEITLLDSNIIVYKFAQDLHFFVTGGENENELILASVLQGFFDAVALLLRSNVEKMEALENLDLIFLCLDEMVDQGVVLETDPNVIAGKVAMQSTEASGSLSEQTLTQALATAREHLARSLL 178          
BLAST of CN181874 vs. ExPASy Swiss-Prot
Match: COPZ1_ORYSJ (Coatomer subunit zeta-1 OS=Oryza sativa subsp. japonica GN=COPZ1 PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.246e-42
Identity = 87/140 (62.14%), Postives = 107/140 (76.43%), Query Frame = -2
Query:  290 AFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEAXXXXXXXXXXXXXIVDGGIILETDANVIAGKVASHSVDVGAPLSEQTISQALATAREHLTRSLL 709
            AFEK+VF KTQK  A  EAEI M +G+++VYKF+QDLHFFVTGGE+ENELILA+VLQGF DAV ++LR NVDK+ A             IVDGGI+LET+ +VIA KV++H ++    L+EQTI QAL TAREHLT+SLL
Sbjct:   37 AFEKSVFVKTQKATAGAEAEIVMFDGHIVVYKFIQDLHFFVTGGEEENELILASVLQGFTDAVDIILRNNVDKRTALENLDLILLCLDEIVDGGIVLETEGSVIAEKVSAHGIEGATSLAEQTIVQALTTAREHLTKSLL 176          
BLAST of CN181874 vs. ExPASy Swiss-Prot
Match: COPZ3_ORYSJ (Coatomer subunit zeta-3 OS=Oryza sativa subsp. japonica GN=Os01g0838800 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 8.273e-38
Identity = 79/140 (56.43%), Postives = 100/140 (71.43%), Query Frame = -2
Query:  293 EAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEAXXXXXXXXXXXXXIVDGGIILETDANVIAGKVASHSVDVGAPLSEQTISQALATAREHLTRSL 712
            +AFEK+VF KTQKT+ARTEAEI M +   +VYKF+QDLHFFVTGG++ENELILA+VLQGF +A+  LLR  V ++ A             +VDGGI+LETDA  I  KV+ H ++    L+EQ +S ALATAREH  RS+
Sbjct:   36 QAFEKSVFAKTQKTSARTEAEIVMFDSYFVVYKFIQDLHFFVTGGDEENELILASVLQGFSEAIDYLLRNKVHRRAALENLDLIFLCLDEVVDGGIVLETDAKAILEKVSGHGLEGSGSLTEQKLSSALATAREHFARSI 175          
BLAST of CN181874 vs. ExPASy Swiss-Prot
Match: COPZ1_BOVIN (Coatomer subunit zeta-1 OS=Bos taurus GN=COPZ1 PE=1 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 1.978e-23
Identity = 64/142 (45.07%), Postives = 88/142 (61.97%), Query Frame = -2
Query:  287 EAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEAXXXXXXXXXXXXXIVDGGIILETDANVIAGKVASHSVDVGAPLSEQTISQALATAREHLTRSLLK 712
            +AFEK +F KT     RT++EIA+LEG  +VYK   DL+F+V G   ENEL+L TVL   FD++  +LR NV+K+               IVDGG+ILE+D   +  +VA    DV  PL+EQT+SQ L +A+E +  SLL+
Sbjct:   42 KAFEKNIFNKTH----RTDSEIALLEGLTVVYKSSIDLYFYVIGSSYENELMLMTVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVDGGVILESDPQQVVHRVALRGEDV--PLTEQTVSQVLQSAKEQIKWSLLR 177          
BLAST of CN181874 vs. ExPASy Swiss-Prot
Match: COPZ1_PONAB (Coatomer subunit zeta-1 OS=Pongo abelii GN=COPZ1 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.518e-23
Identity = 63/142 (44.37%), Postives = 87/142 (61.27%), Query Frame = -2
Query:  287 EAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEAXXXXXXXXXXXXXIVDGGIILETDANVIAGKVASHSVDVGAPLSEQTISQALATAREHLTRSLLK 712
            +AFEK +F KT     RT++EIA+LEG  +VYK   DL+F+V G   ENEL+L  VL   FD++  +LR NV+K+               IVDGG+ILE+D   +  +VA    DV  PL+EQT+SQ L +A+E +  SLL+
Sbjct:   42 KAFEKNIFNKTH----RTDSEIALLEGLTVVYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVDGGVILESDPQQVVHRVALRGEDV--PLTEQTVSQVLQSAKEQIKWSLLR 177          
BLAST of CN181874 vs. ExPASy Swiss-Prot
Match: COPZ1_MOUSE (Coatomer subunit zeta-1 OS=Mus musculus GN=Copz1 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.518e-23
Identity = 63/142 (44.37%), Postives = 87/142 (61.27%), Query Frame = -2
Query:  287 EAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEAXXXXXXXXXXXXXIVDGGIILETDANVIAGKVASHSVDVGAPLSEQTISQALATAREHLTRSLLK 712
            +AFEK +F KT     RT++EIA+LEG  +VYK   DL+F+V G   ENEL+L  VL   FD++  +LR NV+K+               IVDGG+ILE+D   +  +VA    DV  PL+EQT+SQ L +A+E +  SLL+
Sbjct:   42 KAFEKNIFNKTH----RTDSEIALLEGLTVVYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVDGGVILESDPQQVVHRVALRGEDV--PLTEQTVSQVLQSAKEQIKWSLLR 177          
BLAST of CN181874 vs. ExPASy Swiss-Prot
Match: COPZ1_HUMAN (Coatomer subunit zeta-1 OS=Homo sapiens GN=COPZ1 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.518e-23
Identity = 63/142 (44.37%), Postives = 87/142 (61.27%), Query Frame = -2
Query:  287 EAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEAXXXXXXXXXXXXXIVDGGIILETDANVIAGKVASHSVDVGAPLSEQTISQALATAREHLTRSLLK 712
            +AFEK +F KT     RT++EIA+LEG  +VYK   DL+F+V G   ENEL+L  VL   FD++  +LR NV+K+               IVDGG+ILE+D   +  +VA    DV  PL+EQT+SQ L +A+E +  SLL+
Sbjct:   42 KAFEKNIFNKTH----RTDSEIALLEGLTVVYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVDGGVILESDPQQVVHRVALRGEDV--PLTEQTVSQVLQSAKEQIKWSLLR 177          
The following BLAST results are available for this feature:
BLAST of CN181874 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
COPZ1_ARATH2.243e-5173.24Coatomer subunit zeta-1 OS=Arabidopsis thaliana GN... [more]
COPZ2_ORYSJ2.321e-4870.92Coatomer subunit zeta-2 OS=Oryza sativa subsp. jap... [more]
COPZ3_ARATH2.172e-4667.86Coatomer subunit zeta-3 OS=Arabidopsis thaliana GN... [more]
COPZ2_ARATH6.320e-4667.86Coatomer subunit zeta-2 OS=Arabidopsis thaliana GN... [more]
COPZ1_ORYSJ3.246e-4262.14Coatomer subunit zeta-1 OS=Oryza sativa subsp. jap... [more]
COPZ3_ORYSJ8.273e-3856.43Coatomer subunit zeta-3 OS=Oryza sativa subsp. jap... [more]
COPZ1_BOVIN1.978e-2345.07Coatomer subunit zeta-1 OS=Bos taurus GN=COPZ1 PE=... [more]
COPZ1_PONAB7.518e-2344.37Coatomer subunit zeta-1 OS=Pongo abelii GN=COPZ1 P... [more]
COPZ1_MOUSE7.518e-2344.37Coatomer subunit zeta-1 OS=Mus musculus GN=Copz1 P... [more]
COPZ1_HUMAN7.518e-2344.37Coatomer subunit zeta-1 OS=Homo sapiens GN=COPZ1 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001J18_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001J18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181874 ID=CN181874; Name=CN181874; organism=Citrus sinensis; type=EST; length=713bp
TTTTTTTTTTTTTTTCTCAAAACTAATTTTTGATACTTTAATCATCACCG
TCCTCTGTGTTTTCAATGATCAAACAATACAAGGTTTACACAAATAAAAT
CTTCAAATGCGAAAACGCCAGCACACCCCCGAGGGACAACACTTCTGACA
GCACAAATGGCAGCATCATCTACTAATATTAAGAAAGCAAAATTGGAGAT
GCTCATTAACCGGTAAATCATGTATGGTAAAAACTGAGAAAATACGAGAA
CTCTGCTCTCTCCTTTTTATTCTGGTGCAATCATCACTTAAGAAGGGATC
TTGTTAAATGTTCACGGGCAGTAGCCAATGCTTGACTAATTGTCTGCTCA
GACAAAGGAGCTCCAACATCCACACTATGGCTTGCAACCTTTCCAGCAAT
GACATTTGCATCAGTTTCCAGAATGATACCTCCATCAACAATTTCATCAA
GGCACAACAAGATAAGATCCAAGTTCTCAAGAGCCTCCTTCTTGTCCACA
TTGCCTCTAAGAAGAAGACCAACTGCATCAAAAAATCCCTGAAGAACCGT
GGCTAAGATCAGCTCATTTTCATCTTCACCCCCAGTGACAAAAAAGTGAA
GGTCTTGAACAAACTTGTAAACAATAACGTTGCCCTCAAGCATAGCTATC
TCCGCTTCGGTCCGTGCATTTGTTTTCTGGGTCTTGGTAAACACAGCTTT
CTCAAAAGCTTCC
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