CK939692

Overview
NameCK939692
Unique NameCK939692
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length727
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2210 contig Csv1_Contig2210:1..727. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK939692 vs. ExPASy Swiss-Prot
Match: PSBW_SPIOL (Photosystem II reaction center W protein, chloroplastic OS=Spinacia oleracea GN=psbW PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.235e-27
Identity = 66/124 (53.23%), Postives = 75/124 (60.48%), Query Frame = 1
Query:  112 MAAITASVGTSSITPSVLVHKPSIVASSSPVLGLPAKAVKGKVRCSMEEKPSKQESKT--NVGXXXXXXXXXXXXXXXXXXXXLVDDRMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYIPYA 477
            MA ITAS   S +  + LVH   +  SSSP+LGLP+   + KV CS+E KPS  E+ T  N                      LVD+RMSTEGTGLPFGLSNNLLGWIL GVFGLIWALY  YA
Sbjct:    1 MATITASSSASLVARASLVHNSRVGVSSSPILGLPSMTKRSKVTCSIENKPSTTETTTTTNKSMGASLLAAAAAATISNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWALYFVYA 124          
BLAST of CK939692 vs. ExPASy Swiss-Prot
Match: PSBW_ARATH (Photosystem II reaction center W protein, chloroplastic OS=Arabidopsis thaliana GN=PSBW PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.130e-20
Identity = 63/123 (51.22%), Postives = 73/123 (59.35%), Query Frame = 1
Query:  112 MAAITASVGTSSITPSVLVHKPSIVASSSPVLGLPAKAVK-GKVRCSMEEKPSKQESKTNVGXXXXXXXXXXXXXXXXXXXX-LVDDRMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYIPY 474
            MA+ TAS  T S     L+ KP+ VA S+PVLGLP    K G VRCSME   +KQ + + +G                     LVD+RMSTEGTGLPFGLSNNLLGWIL GVFGLIW  +  Y
Sbjct:    1 MASFTASASTVSAARPALLLKPT-VAISAPVLGLPPMGKKKGGVRCSME---TKQGNVSVMGAGVSAAATAALTAVMSNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWTFFFVY 119          
BLAST of CK939692 vs. ExPASy Swiss-Prot
Match: PSBW_ORYSJ (Photosystem II reaction center W protein, chloroplastic OS=Oryza sativa subsp. japonica GN=PSBW PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.479e-13
Identity = 50/123 (40.65%), Postives = 62/123 (50.41%), Query Frame = 1
Query:  112 MAAITASVGTSSITPSVLVHKPSIVASSSPVLGLPAKAVKG--KVRCSMEEKPSKQESKTNVGXXXXXXXXXXXXXXXXXXXXLVDDRMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYIPY 474
            MA ++A+  TS +  +VL             LGLP    +   +VRC+     SK+ +                         LVD+RMSTEGTGL  GLSNNLLGWILLGVFGLIW+LY  Y
Sbjct:    1 MATVSAAAATSVVARAVLAGP----------LGLPQMRARRSERVRCNY----SKEAATPAAAVKGAGASLLAMAATAAPAMALVDERMSTEGTGLSLGLSNNLLGWILLGVFGLIWSLYTIY 109          
The following BLAST results are available for this feature:
BLAST of CK939692 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PSBW_SPIOL5.235e-2753.23Photosystem II reaction center W protein, chloropl... [more]
PSBW_ARATH2.130e-2051.22Photosystem II reaction center W protein, chloropl... [more]
PSBW_ORYSJ1.479e-1340.65Photosystem II reaction center W protein, chloropl... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004746_H02 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650002_IIF_H02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939692 ID=CK939692; Name=CK939692; organism=Citrus sinensis; type=EST; length=727bp
GGGGGATATTAATCTGTAGATGCTTCAACGAAATAAACTGATATACCCTG
ACCACAGCAAACATCTTTGTGCTCATTCTTCACTCCATCTCGTCTTCCAA
CTCCAAGAAAAATGGCCGCCATCACTGCTAGCGTAGGAACATCATCGATT
ACACCCTCGGTTCTTGTACACAAGCCATCCATTGTAGCTTCATCATCCCC
TGTTCTTGGATTGCCAGCAAAGGCAGTGAAGGGGAAAGTGAGATGTTCGA
TGGAGGAAAAGCCTTCAAAGCAAGAGAGCAAAACAAACGTGGGAATGAGT
GCGTCACTGCTGGCAGCAGCATGCGCGGCAACAATGTCAAGCCCAGCCAT
GGCTCTTGTTGATGATAGAATGAGCACTGAAGGAACAGGGCTTCCATTTG
GCTTGAGCAACAACCTCCTTGGGTGGATTCTGTTGGGTGTTTTTGGTCTC
ATCTGGGCCCTCTACATTCCTTACGCTTCCAGTCTTGATGAAGATGAAGA
GTCCGGATTGTCCCTCTAACAGTCCGAAGTCTAAAGCCAAACCCCTTGTT
GGTAGAAATGTAAAGAGTTTGGCCTTTTTCCTTAAATTTGTTTTAGTAAA
ATCTATCTTTTGTGTTTCTGTTTCTTGACTCATGTTTCCTCTCTGTGCAA
TGTTATTTTCTCTTTAATGCTTCATTTGATCGTGGAGTATTAAAAAAAGA
AAAAAAAAAAAAAAAAAAAAAAAAAAA
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