CK939692
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK939692 vs. ExPASy Swiss-Prot
Match: PSBW_SPIOL (Photosystem II reaction center W protein, chloroplastic OS=Spinacia oleracea GN=psbW PE=1 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 5.235e-27 Identity = 66/124 (53.23%), Postives = 75/124 (60.48%), Query Frame = 1 Query: 112 MAAITASVGTSSITPSVLVHKPSIVASSSPVLGLPAKAVKGKVRCSMEEKPSKQESKT--NVGXXXXXXXXXXXXXXXXXXXXLVDDRMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYIPYA 477 MA ITAS S + + LVH + SSSP+LGLP+ + KV CS+E KPS E+ T N LVD+RMSTEGTGLPFGLSNNLLGWIL GVFGLIWALY YA Sbjct: 1 MATITASSSASLVARASLVHNSRVGVSSSPILGLPSMTKRSKVTCSIENKPSTTETTTTTNKSMGASLLAAAAAATISNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWALYFVYA 124
BLAST of CK939692 vs. ExPASy Swiss-Prot
Match: PSBW_ARATH (Photosystem II reaction center W protein, chloroplastic OS=Arabidopsis thaliana GN=PSBW PE=1 SV=2) HSP 1 Score: 99.3673 bits (246), Expect = 2.130e-20 Identity = 63/123 (51.22%), Postives = 73/123 (59.35%), Query Frame = 1 Query: 112 MAAITASVGTSSITPSVLVHKPSIVASSSPVLGLPAKAVK-GKVRCSMEEKPSKQESKTNVGXXXXXXXXXXXXXXXXXXXX-LVDDRMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYIPY 474 MA+ TAS T S L+ KP+ VA S+PVLGLP K G VRCSME +KQ + + +G LVD+RMSTEGTGLPFGLSNNLLGWIL GVFGLIW + Y Sbjct: 1 MASFTASASTVSAARPALLLKPT-VAISAPVLGLPPMGKKKGGVRCSME---TKQGNVSVMGAGVSAAATAALTAVMSNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWTFFFVY 119
BLAST of CK939692 vs. ExPASy Swiss-Prot
Match: PSBW_ORYSJ (Photosystem II reaction center W protein, chloroplastic OS=Oryza sativa subsp. japonica GN=PSBW PE=2 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.479e-13 Identity = 50/123 (40.65%), Postives = 62/123 (50.41%), Query Frame = 1 Query: 112 MAAITASVGTSSITPSVLVHKPSIVASSSPVLGLPAKAVKG--KVRCSMEEKPSKQESKTNVGXXXXXXXXXXXXXXXXXXXXLVDDRMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYIPY 474 MA ++A+ TS + +VL LGLP + +VRC+ SK+ + LVD+RMSTEGTGL GLSNNLLGWILLGVFGLIW+LY Y Sbjct: 1 MATVSAAAATSVVARAVLAGP----------LGLPQMRARRSERVRCNY----SKEAATPAAAVKGAGASLLAMAATAAPAMALVDERMSTEGTGLSLGLSNNLLGWILLGVFGLIWSLYTIY 109 The following BLAST results are available for this feature:
BLAST of CK939692 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 3
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CK939692 ID=CK939692; Name=CK939692; organism=Citrus sinensis; type=EST; length=727bpback to top |