CK939315

Overview
NameCK939315
Unique NameCK939315
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length510
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9461 contig Csv1_Contig9461:252..761. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK939315 vs. ExPASy Swiss-Prot
Match: RS12_HORVU (40S ribosomal protein S12 OS=Hordeum vulgare GN=RPS12 PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 1.258e-42
Identity = 80/92 (86.96%), Postives = 89/92 (96.74%), Query Frame = 1
Query:    1 AKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCAVVKDFGEESDGLNVVQQHIKS 276
            AK IEKHAAQLCVLAEDC+QPDYVKLVKALCA+HNV L+TVPSAKTLGEWAGLCKID+EGKARKVVGCSC VVKD+GEES+GLN+VQQ++KS
Sbjct:   51 AKSIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVHLVTVPSAKTLGEWAGLCKIDTEGKARKVVGCSCIVVKDYGEESEGLNIVQQYVKS 142          
BLAST of CK939315 vs. ExPASy Swiss-Prot
Match: RS122_ARATH (40S ribosomal protein S12-2 OS=Arabidopsis thaliana GN=RPS12C PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 7.635e-40
Identity = 75/93 (80.65%), Postives = 85/93 (91.40%), Query Frame = 1
Query:    1 AKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCAVVKDFGEESDGLNVVQQHIKSH 279
            AK+IEK  AQLCVLAEDCNQPDYVKLVKALCADH++ LLTVPSAKTLGEWAGLCKIDSEG ARKVVGCSC V+KDFGEE+  LN+V++H+ S+
Sbjct:   52 AKLIEKRNAQLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVIKDFGEETTALNIVKKHLDSN 144          
BLAST of CK939315 vs. ExPASy Swiss-Prot
Match: RS121_ARATH (40S ribosomal protein S12-1 OS=Arabidopsis thaliana GN=RPS12A PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 2.456e-38
Identity = 76/92 (82.61%), Postives = 81/92 (88.04%), Query Frame = 1
Query:    1 AKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCAVVKDFGEESDGLNVVQQHIKS 276
            AK+IEK  AQL VLAEDCNQPDYVKLVKALCADH V LLTVPSAKTLGEWAGLCKIDSEG ARKVVGCSC VVKDFGEE+  L++V +HI S
Sbjct:   52 AKLIEKRVAQLVVLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVVKDFGEETTALSIVNKHIAS 143          
BLAST of CK939315 vs. ExPASy Swiss-Prot
Match: RS12_ORENI (40S ribosomal protein S12 OS=Oreochromis niloticus GN=rps12 PE=2 SV=3)

HSP 1 Score: 124.405 bits (311), Expect = 3.009e-28
Identity = 55/92 (59.78%), Postives = 72/92 (78.26%), Query Frame = 1
Query:    1 AKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCAVVKDFGEESDGLNVVQQHIKS 276
            AK ++K  A LCVLA +C++P YVKLV+ALCA+H ++L+ V   K LGEW GLCKID EGK RKVVGCSC VVKD+G+ES   +V++++ KS
Sbjct:   39 AKALDKRQAHLCVLAANCDEPMYVKLVEALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFKS 130          
BLAST of CK939315 vs. ExPASy Swiss-Prot
Match: RS12_CYAPA (40S ribosomal protein S12 OS=Cyanophora paradoxa GN=RPS12 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.133e-28
Identity = 54/91 (59.34%), Postives = 72/91 (79.12%), Query Frame = 1
Query:    1 AKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCAVVKDFGEESDGLNVVQQHIK 273
            AK +++ +AQLCVLA + N+P Y +LV+ALCA+H ++L+ VP  K LGEW GLCKID EGKARKVVGCSCAV+  FGEES+   V+ +++K
Sbjct:   44 AKALDQRSAQLCVLAANVNEPAYTRLVEALCAEHGINLIKVPENKQLGEWVGLCKIDKEGKARKVVGCSCAVITKFGEESEARQVLMEYLK 134          
BLAST of CK939315 vs. ExPASy Swiss-Prot
Match: RS12_PIG (40S ribosomal protein S12 OS=Sus scrofa GN=RPS12 PE=2 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 6.704e-28
Identity = 54/91 (59.34%), Postives = 71/91 (78.02%), Query Frame = 1
Query:    1 AKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCAVVKDFGEESDGLNVVQQHIK 273
            AK ++K  A LCVLA +C++P YVKLV+ALCA+H ++L+ V   K LGEW GLCKID EGK RKVVGCSC VVKD+G+ES   +V++++ K
Sbjct:   39 AKALDKRQAHLCVLASNCDEPMYVKLVEALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129          
BLAST of CK939315 vs. ExPASy Swiss-Prot
Match: RS12_HUMAN (40S ribosomal protein S12 OS=Homo sapiens GN=RPS12 PE=1 SV=3)

HSP 1 Score: 123.25 bits (308), Expect = 6.704e-28
Identity = 54/91 (59.34%), Postives = 71/91 (78.02%), Query Frame = 1
Query:    1 AKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCAVVKDFGEESDGLNVVQQHIK 273
            AK ++K  A LCVLA +C++P YVKLV+ALCA+H ++L+ V   K LGEW GLCKID EGK RKVVGCSC VVKD+G+ES   +V++++ K
Sbjct:   39 AKALDKRQAHLCVLASNCDEPMYVKLVEALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129          
BLAST of CK939315 vs. ExPASy Swiss-Prot
Match: RS12_CHICK (40S ribosomal protein S12 OS=Gallus gallus GN=RPS12 PE=1 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 6.704e-28
Identity = 54/91 (59.34%), Postives = 71/91 (78.02%), Query Frame = 1
Query:    1 AKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCAVVKDFGEESDGLNVVQQHIK 273
            AK ++K  A LCVLA +C++P YVKLV+ALCA+H ++L+ V   K LGEW GLCKID EGK RKVVGCSC VVKD+G+ES   +V++++ K
Sbjct:   39 AKALDKRQAHLCVLASNCDEPMYVKLVEALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129          
BLAST of CK939315 vs. ExPASy Swiss-Prot
Match: RS12_BOVIN (40S ribosomal protein S12 OS=Bos taurus GN=RPS12 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 6.704e-28
Identity = 54/91 (59.34%), Postives = 71/91 (78.02%), Query Frame = 1
Query:    1 AKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCAVVKDFGEESDGLNVVQQHIK 273
            AK ++K  A LCVLA +C++P YVKLV+ALCA+H ++L+ V   K LGEW GLCKID EGK RKVVGCSC VVKD+G+ES   +V++++ K
Sbjct:   39 AKALDKRQAHLCVLASNCDEPMYVKLVEALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129          
BLAST of CK939315 vs. ExPASy Swiss-Prot
Match: RS12_XENLA (40S ribosomal protein S12 OS=Xenopus laevis GN=rps12 PE=2 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 9.680e-27
Identity = 53/91 (58.24%), Postives = 70/91 (76.92%), Query Frame = 1
Query:    1 AKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCAVVKDFGEESDGLNVVQQHIK 273
            AK ++K  A LCVLA +C++P YVKLV+ALCA+  ++L+ V   K LGEW GLCKID EGK RKVVGCSC VVKD+G+ES   +V++++ K
Sbjct:   39 AKALDKRQAHLCVLASNCDEPMYVKLVEALCAEPQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129          
The following BLAST results are available for this feature:
BLAST of CK939315 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
RS12_HORVU1.258e-4286.9640S ribosomal protein S12 OS=Hordeum vulgare GN=RP... [more]
RS122_ARATH7.635e-4080.6540S ribosomal protein S12-2 OS=Arabidopsis thalian... [more]
RS121_ARATH2.456e-3882.6140S ribosomal protein S12-1 OS=Arabidopsis thalian... [more]
RS12_ORENI3.009e-2859.7840S ribosomal protein S12 OS=Oreochromis niloticus... [more]
RS12_CYAPA5.133e-2859.3440S ribosomal protein S12 OS=Cyanophora paradoxa G... [more]
RS12_PIG6.704e-2859.3440S ribosomal protein S12 OS=Sus scrofa GN=RPS12 P... [more]
RS12_HUMAN6.704e-2859.3440S ribosomal protein S12 OS=Homo sapiens GN=RPS12... [more]
RS12_CHICK6.704e-2859.3440S ribosomal protein S12 OS=Gallus gallus GN=RPS1... [more]
RS12_BOVIN6.704e-2859.3440S ribosomal protein S12 OS=Bos taurus GN=RPS12 P... [more]
RS12_XENLA9.680e-2758.2440S ribosomal protein S12 OS=Xenopus laevis GN=rps... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004752_B02 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IVF_B02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939315 ID=CK939315; Name=CK939315; organism=Citrus sinensis; type=EST; length=510bp
GCCAAAGTGATTGAAAAGCATGCTGCCCAGCTCTGTGTATTGGCTGAGGA
TTGTAACCAACCTGACTATGTGAAATTGGTCAAGGCACTCTGTGCTGACC
ATAACGTAAGCTTGTTGACGGTTCCCAGTGCCAAGACCCTCGGCGAGTGG
GCTGGTTTGTGCAAGATTGACTCAGAGGGAAAGGCCAGGAAGGTTGTGGG
TTGTTCCTGTGCTGTTGTGAAGGATTTCGGAGAGGAAAGCGATGGTCTTA
ACGTTGTTCAGCAGCACATCAAGTCTCACTGAGTAGCAGTGATGGATTCG
TAGTTCAACTTTTATATTTATAGAGAGGGCCTTGTCTTTTTTCTGTCAAA
TTGTGTTTGGTTGTCTCACTCCAAGGAGATTTTGTGTTCGTTAGTTGCTA
TTACTTTTAGTACTTTTGTNNNNCAATCCTTTATTGCAACTGAAAACATC
AATCCTTTTCTATATTTTTGCTGNNNTGAATCTTTTCAAAANNAAAAAAA
AAAAAAAAAA
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