CK939299

Overview
NameCK939299
Unique NameCK939299
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length475
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK939299_ssr361 microsatellite CK939299_ssr361:361..375. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1871 contig Csv1_Contig1871:176..650. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK939299 vs. ExPASy Swiss-Prot
Match: RL24_PRUAV (60S ribosomal protein L24 OS=Prunus avium GN=RPL24 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 2.212e-40
Identity = 83/104 (79.81%), Postives = 87/104 (83.65%), Query Frame = 2
Query:    2 KCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIXXXXXXXXXXXXXVTSKSKTQ 313
            KCKRYFHNRLKPSKLTWT+MYRKQHKKDIA EAVKK+RR+TKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERI             VT   K+Q
Sbjct:   37 KCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVTKSQKSQ 140          
BLAST of CK939299 vs. ExPASy Swiss-Prot
Match: RL24_CICAR (60S ribosomal protein L24 OS=Cicer arietinum GN=RPL24 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 2.070e-38
Identity = 79/102 (77.45%), Postives = 86/102 (84.31%), Query Frame = 2
Query:    2 KCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIXXXXXXXXXXXXXVTSKSK 307
            KCKRYFHNRLKPSKLTWT+M+RKQHKKD A EAVKK+RR+TKKPYSRSIVGATLEVIQK+RTEKPEVRDAAREAALREIKERI             V SK++
Sbjct:   37 KCKRYFHNRLKPSKLTWTAMFRKQHKKDAAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVASKAQ 138          
BLAST of CK939299 vs. ExPASy Swiss-Prot
Match: RL24_HORVU (60S ribosomal protein L24 OS=Hordeum vulgare GN=RPL24 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 7.867e-38
Identity = 78/104 (75.00%), Postives = 84/104 (80.77%), Query Frame = 2
Query:    2 KCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIXXXXXXXXXXXXXVTSKSKTQ 313
            KCKRYFHNRLKP+KL WT+MYRKQHKKDI AEA KK+RR+TKKPYSRSIVGATLEVIQK+R EKPEVRDAAREAALREIKERI             VT   K+Q
Sbjct:   37 KCKRYFHNRLKPAKLCWTAMYRKQHKKDIHAEAAKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVTKSQKSQ 140          
BLAST of CK939299 vs. ExPASy Swiss-Prot
Match: RL242_ARATH (60S ribosomal protein L24-2 OS=Arabidopsis thaliana GN=RPL24B PE=2 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 8.698e-37
Identity = 73/83 (87.95%), Postives = 79/83 (95.18%), Query Frame = 2
Query:    2 KCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERI 250
            KCKRYFHN+LKPSKL WT+MYRKQHKKD A EAVK++RR+TKKPYSRSIVGATLEVIQK+R EKPEVRDAAREAALREIKERI
Sbjct:   37 KCKRYFHNKLKPSKLAWTAMYRKQHKKDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERI 119          
BLAST of CK939299 vs. ExPASy Swiss-Prot
Match: RL241_ARATH (60S ribosomal protein L24-1 OS=Arabidopsis thaliana GN=RPL24A PE=1 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 1.136e-36
Identity = 73/83 (87.95%), Postives = 79/83 (95.18%), Query Frame = 2
Query:    2 KCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERI 250
            KCKRYFHN+LKPSKL WT+MYRKQHKKD A EAVK++RR+TKKPYSRSIVGATLEVIQK+R EKPEVRDAAREAALREIKERI
Sbjct:   37 KCKRYFHNKLKPSKLCWTAMYRKQHKKDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERI 119          
BLAST of CK939299 vs. ExPASy Swiss-Prot
Match: RL24_NEUCR (60S ribosomal protein L24 OS=Neurospora crassa GN=rpl-24 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.222e-14
Identity = 40/82 (48.78%), Postives = 56/82 (68.29%), Query Frame = 2
Query:    2 KCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKER 247
            K +  F  R  P ++ WT +YR+QHKK I+ E  KK+ R T K   R+IVGA+LEVI++RR+ +PE R AAR AA++E K +
Sbjct:   35 KSESLFLQRKNPRRIAWTVLYRRQHKKGISEEVAKKRSRRTVKA-QRAIVGASLEVIKERRSMRPEARSAARLAAIKESKAK 115          
BLAST of CK939299 vs. ExPASy Swiss-Prot
Match: RL24B_SCHPO (60S ribosomal protein L24-B OS=Schizosaccharomyces pombe GN=rpl24b PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.596e-14
Identity = 39/82 (47.56%), Postives = 57/82 (69.51%), Query Frame = 2
Query:    2 KCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKER 247
            K +  F  R  P +L+WT +YR+ HKK I+ E  KK+ R T K + R IVGA L+VI+++R ++PEVR AAR AAL++ K++
Sbjct:   35 KSESLFLQRKNPRRLSWTVLYRRMHKKGISEEHAKKRTRRTVK-HQRGIVGANLDVIKEKRNQRPEVRAAARAAALKQRKDK 115          
BLAST of CK939299 vs. ExPASy Swiss-Prot
Match: RL24A_SCHPO (60S ribosomal protein L24-A OS=Schizosaccharomyces pombe GN=rpl24a PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.596e-14
Identity = 39/82 (47.56%), Postives = 57/82 (69.51%), Query Frame = 2
Query:    2 KCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKER 247
            K +  F  R  P +L+WT +YR+ HKK I+ E  KK+ R T K + R IVGA L+VI+++R ++PEVR AAR AAL++ K++
Sbjct:   35 KSESLFLQRKNPRRLSWTVLYRRMHKKGISEEHAKKRTRRTVK-HQRGIVGANLDVIKEKRNQRPEVRAAARAAALKQRKDK 115          
BLAST of CK939299 vs. ExPASy Swiss-Prot
Match: RL24_DEBHA (60S ribosomal protein L24 OS=Debaryomyces hansenii GN=RPL24 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.723e-14
Identity = 38/81 (46.91%), Postives = 56/81 (69.14%), Query Frame = 2
Query:    2 KCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKE 244
            K    FH R  P +++WT +YR+QHKK I+ E+ K++ R T K   R+IVGA+LE+I++RR++KP  R AAR+  L + KE
Sbjct:   35 KSASLFHQRKNPRRISWTVLYRRQHKKGISEESAKRRTRKTVK-NQRAIVGASLELIKERRSQKPSDRKAARDVKLAKDKE 114          
BLAST of CK939299 vs. ExPASy Swiss-Prot
Match: RL24_DROME (60S ribosomal protein L24 OS=Drosophila melanogaster GN=RpL24 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 7.922e-14
Identity = 38/82 (46.34%), Postives = 56/82 (68.29%), Query Frame = 2
Query:    2 KCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKER 247
            KC+R +  +  P K+TWT +YR++H+K I  EA KK+ R T+K + R+IVGA+L  I  +R  KPEVR A R+ A++  KE+
Sbjct:   35 KCERSYLMKRNPRKVTWTVLYRRKHRKGIEEEASKKRTRRTQK-FQRAIVGASLAEILAKRNMKPEVRKAQRDQAIKVAKEQ 115          
The following BLAST results are available for this feature:
BLAST of CK939299 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
RL24_PRUAV2.212e-4079.8160S ribosomal protein L24 OS=Prunus avium GN=RPL24... [more]
RL24_CICAR2.070e-3877.4560S ribosomal protein L24 OS=Cicer arietinum GN=RP... [more]
RL24_HORVU7.867e-3875.0060S ribosomal protein L24 OS=Hordeum vulgare GN=RP... [more]
RL242_ARATH8.698e-3787.9560S ribosomal protein L24-2 OS=Arabidopsis thalian... [more]
RL241_ARATH1.136e-3687.9560S ribosomal protein L24-1 OS=Arabidopsis thalian... [more]
RL24_NEUCR1.222e-1448.7860S ribosomal protein L24 OS=Neurospora crassa GN=... [more]
RL24B_SCHPO1.596e-1447.5660S ribosomal protein L24-B OS=Schizosaccharomyces... [more]
RL24A_SCHPO1.596e-1447.5660S ribosomal protein L24-A OS=Schizosaccharomyces... [more]
RL24_DEBHA2.723e-1446.9160S ribosomal protein L24 OS=Debaryomyces hansenii... [more]
RL24_DROME7.922e-1446.3460S ribosomal protein L24 OS=Drosophila melanogast... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004752_F05 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IVF_F05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939299 ID=CK939299; Name=CK939299; organism=Citrus sinensis; type=EST; length=475bp
AAAATGCAAGAGGTACTTCCACAACCGCTTGAAGCCATCAAAGCTTACAT
GGACTTCCATGTACAGGAAACAACACAAGAAGGATATTGCTGCTGAGGCT
GTAAAGAAGAAGCGCCGCTCCACAAAGAAGCCATATTCAAGGTCTATTGT
CGGTGCAACCTTGGAAGTCATACAGAAGAGGAGGACTGAAAAGCCTGAAG
TTCGAGATGCTGCTCGTGAGGCTGCACTTCGTGAAATTAAGGAGAGGATC
AAGAAGACCAAAGATGAAAAGAGGGCCAAGAAAGCTGAGGTGACATCCAA
GTCAAAGACTCAAAGCAAGGGTAGCATGCCCAAGGGTGCCGCTCCGAAGG
GCCCCAAGCTTGGTGGTGGTGGTGGAAAACGGTGAAGTGCTTCGTCTCTT
CATTTCTTCCTGACTACTATCTTAAACAATTAATATATTTATTCCATATT
TTNNGAATGGATTGGTCAATACTTG
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