CK938672

Overview
NameCK938672
Unique NameCK938672
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length739
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8093 contig Csv1_Contig8093:15..752. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK938672 vs. ExPASy Swiss-Prot
Match: TDT_ARATH (Tonoplast dicarboxylate transporter OS=Arabidopsis thaliana GN=TDT PE=2 SV=2)

HSP 1 Score: 317.005 bits (811), Expect = 6.704e-86
Identity = 166/237 (70.04%), Postives = 187/237 (78.90%), Query Frame = 1
Query:   55 MNGDHEAHPNSGDIKAPLLP---SHRQIQRSPSSHFTLKTIFTPNNFYILLGPLLCAVICVCVKLDGQ--ATSRNMLGVLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNLPEVPLQSTLVR----KYCKAVVLGVIYSAAVGGMSTL 738
            MNG       S D+K+PLLP   +    +R       L+TIFTP N YI LGPLLCAV+C+CV L G    T+RNMLGVL W+FAWWLTEAVPMPITSM PLFLFPLFGIS+AD VA+SYMDDVI+LVLGSFILALAVEHYNIH+RLALNIT++FC EP+N PLLLLGIC TTAFVSMWMHNVAAAV+MMPVATGILQ LP     + +V     K+ +AVVLGVIYSAAVGGMSTL
Sbjct:    1 MNGGDVTVAGSDDLKSPLLPVVHNDEPFERQTVGQ-QLRTIFTPKNCYIALGPLLCAVVCLCVDLGGDETTTARNMLGVLVWMFAWWLTEAVPMPITSMTPLFLFPLFGISAADDVANSYMDDVISLVLGSFILALAVEHYNIHRRLALNITLVFCVEPLNAPLLLLGICATTAFVSMWMHNVAAAVMMMPVATGILQRLPSSSSTTEVVHPAVGKFSRAVVLGVIYSAAVGGMSTL 236          
BLAST of CK938672 vs. ExPASy Swiss-Prot
Match: SDCS_STAAW (Sodium-dependent dicarboxylate transporter sdcS OS=Staphylococcus aureus (strain MW2) GN=sdcS PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.209e-27
Identity = 61/161 (37.89%), Postives = 98/161 (60.87%), Query Frame = 1
Query:  265 MLGVLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQ---NLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGMSTL 738
            +L +  W+  WW+TEA+P+  TS+ P+ L PL  I + + V+  Y +D+I L LG FILA+A+E +N+H R+AL I  L          +LLG    T F+SM++ N AA +IM+P+   I++   +L E     T ++K+ K++VL + Y+  +GG+ TL
Sbjct:   62 VLAITLWIATWWITEAIPIAATSLLPIVLLPLGHILTPEQVSSEYGNDIIFLFLGGFILAIAMERWNLHTRVALTIINLIGASTSK---ILLGFMVATGFLSMFVSNTAAVMIMIPIGLAIIKEAHDLQEANTNQTSIQKFEKSLVLAIGYAGTIGGLGTL 219          
BLAST of CK938672 vs. ExPASy Swiss-Prot
Match: SDCS_STAAS (Sodium-dependent dicarboxylate transporter sdcS OS=Staphylococcus aureus (strain MSSA476) GN=sdcS PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.209e-27
Identity = 61/161 (37.89%), Postives = 98/161 (60.87%), Query Frame = 1
Query:  265 MLGVLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQ---NLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGMSTL 738
            +L +  W+  WW+TEA+P+  TS+ P+ L PL  I + + V+  Y +D+I L LG FILA+A+E +N+H R+AL I  L          +LLG    T F+SM++ N AA +IM+P+   I++   +L E     T ++K+ K++VL + Y+  +GG+ TL
Sbjct:   62 VLAITLWIATWWITEAIPIAATSLLPIVLLPLGHILTPEQVSSEYGNDIIFLFLGGFILAIAMERWNLHTRVALTIINLIGASTSK---ILLGFMVATGFLSMFVSNTAAVMIMIPIGLAIIKEAHDLQEANTNQTSIQKFEKSLVLAIGYAGTIGGLGTL 219          
BLAST of CK938672 vs. ExPASy Swiss-Prot
Match: SDCS_STAAR (Sodium-dependent dicarboxylate transporter sdcS OS=Staphylococcus aureus (strain MRSA252) GN=sdcS PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.209e-27
Identity = 61/161 (37.89%), Postives = 98/161 (60.87%), Query Frame = 1
Query:  265 MLGVLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQ---NLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGMSTL 738
            +L +  W+  WW+TEA+P+  TS+ P+ L PL  I + + V+  Y +D+I L LG FILA+A+E +N+H R+AL I  L          +LLG    T F+SM++ N AA +IM+P+   I++   +L E     T ++K+ K++VL + Y+  +GG+ TL
Sbjct:   62 VLAITLWIATWWITEAIPIAATSLLPIVLLPLGHILTPEQVSSEYGNDIIFLFLGGFILAIAMERWNLHTRVALTIINLIGASTSK---ILLGFMVATGFLSMFVSNTAAVMIMIPIGLAIIKEAHDLQEANTNQTSIQKFEKSLVLAIGYAGTIGGLGTL 219          
BLAST of CK938672 vs. ExPASy Swiss-Prot
Match: SDCS_STAAN (Sodium-dependent dicarboxylate transporter sdcS OS=Staphylococcus aureus (strain N315) GN=sdcS PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.209e-27
Identity = 61/161 (37.89%), Postives = 98/161 (60.87%), Query Frame = 1
Query:  265 MLGVLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQ---NLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGMSTL 738
            +L +  W+  WW+TEA+P+  TS+ P+ L PL  I + + V+  Y +D+I L LG FILA+A+E +N+H R+AL I  L          +LLG    T F+SM++ N AA +IM+P+   I++   +L E     T ++K+ K++VL + Y+  +GG+ TL
Sbjct:   62 VLAITLWIATWWITEAIPIAATSLLPIVLLPLGHILTPEQVSSEYGNDIIFLFLGGFILAIAMERWNLHTRVALTIINLIGASTSK---ILLGFMVATGFLSMFVSNTAAVMIMIPIGLAIIKEAHDLQEANTNQTSIQKFEKSLVLAIGYAGTIGGLGTL 219          
BLAST of CK938672 vs. ExPASy Swiss-Prot
Match: SDCS_STAAM (Sodium-dependent dicarboxylate transporter sdcS OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=sdcS PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.209e-27
Identity = 61/161 (37.89%), Postives = 98/161 (60.87%), Query Frame = 1
Query:  265 MLGVLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQ---NLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGMSTL 738
            +L +  W+  WW+TEA+P+  TS+ P+ L PL  I + + V+  Y +D+I L LG FILA+A+E +N+H R+AL I  L          +LLG    T F+SM++ N AA +IM+P+   I++   +L E     T ++K+ K++VL + Y+  +GG+ TL
Sbjct:   62 VLAITLWIATWWITEAIPIAATSLLPIVLLPLGHILTPEQVSSEYGNDIIFLFLGGFILAIAMERWNLHTRVALTIINLIGASTSK---ILLGFMVATGFLSMFVSNTAAVMIMIPIGLAIIKEAHDLQEANTNQTSIQKFEKSLVLAIGYAGTIGGLGTL 219          
BLAST of CK938672 vs. ExPASy Swiss-Prot
Match: SDCS_STAAC (Sodium-dependent dicarboxylate transporter sdcS OS=Staphylococcus aureus (strain COL) GN=sdcS PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.209e-27
Identity = 61/161 (37.89%), Postives = 98/161 (60.87%), Query Frame = 1
Query:  265 MLGVLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQ---NLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGMSTL 738
            +L +  W+  WW+TEA+P+  TS+ P+ L PL  I + + V+  Y +D+I L LG FILA+A+E +N+H R+AL I  L          +LLG    T F+SM++ N AA +IM+P+   I++   +L E     T ++K+ K++VL + Y+  +GG+ TL
Sbjct:   62 VLAITLWIATWWITEAIPIAATSLLPIVLLPLGHILTPEQVSSEYGNDIIFLFLGGFILAIAMERWNLHTRVALTIINLIGASTSK---ILLGFMVATGFLSMFVSNTAAVMIMIPIGLAIIKEAHDLQEANTNQTSIQKFEKSLVLAIGYAGTIGGLGTL 219          
BLAST of CK938672 vs. ExPASy Swiss-Prot
Match: SDCS_STAAB (Sodium-dependent dicarboxylate transporter sdcS OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=sdcS PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.209e-27
Identity = 61/161 (37.89%), Postives = 98/161 (60.87%), Query Frame = 1
Query:  265 MLGVLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQ---NLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGMSTL 738
            +L +  W+  WW+TEA+P+  TS+ P+ L PL  I + + V+  Y +D+I L LG FILA+A+E +N+H R+AL I  L          +LLG    T F+SM++ N AA +IM+P+   I++   +L E     T ++K+ K++VL + Y+  +GG+ TL
Sbjct:   62 VLAITLWIATWWITEAIPIAATSLLPIVLLPLGHILTPEQVSSEYGNDIIFLFLGGFILAIAMERWNLHTRVALTIINLIGASTSK---ILLGFMVATGFLSMFVSNTAAVMIMIPIGLAIIKEAHDLQEANTNQTSIQKFEKSLVLAIGYAGTIGGLGTL 219          
BLAST of CK938672 vs. ExPASy Swiss-Prot
Match: SDCS_STAA8 (Sodium-dependent dicarboxylate transporter sdcS OS=Staphylococcus aureus (strain NCTC 8325) GN=sdcS PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.209e-27
Identity = 61/161 (37.89%), Postives = 98/161 (60.87%), Query Frame = 1
Query:  265 MLGVLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQ---NLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGMSTL 738
            +L +  W+  WW+TEA+P+  TS+ P+ L PL  I + + V+  Y +D+I L LG FILA+A+E +N+H R+AL I  L          +LLG    T F+SM++ N AA +IM+P+   I++   +L E     T ++K+ K++VL + Y+  +GG+ TL
Sbjct:   62 VLAITLWIATWWITEAIPIAATSLLPIVLLPLGHILTPEQVSSEYGNDIIFLFLGGFILAIAMERWNLHTRVALTIINLIGASTSK---ILLGFMVATGFLSMFVSNTAAVMIMIPIGLAIIKEAHDLQEANTNQTSIQKFEKSLVLAIGYAGTIGGLGTL 219          
BLAST of CK938672 vs. ExPASy Swiss-Prot
Match: SDCS_STAA3 (Sodium-dependent dicarboxylate transporter sdcS OS=Staphylococcus aureus (strain USA300) GN=sdcS PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.209e-27
Identity = 61/161 (37.89%), Postives = 98/161 (60.87%), Query Frame = 1
Query:  265 MLGVLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQ---NLPEVPLQSTLVRKYCKAVVLGVIYSAAVGGMSTL 738
            +L +  W+  WW+TEA+P+  TS+ P+ L PL  I + + V+  Y +D+I L LG FILA+A+E +N+H R+AL I  L          +LLG    T F+SM++ N AA +IM+P+   I++   +L E     T ++K+ K++VL + Y+  +GG+ TL
Sbjct:   62 VLAITLWIATWWITEAIPIAATSLLPIVLLPLGHILTPEQVSSEYGNDIIFLFLGGFILAIAMERWNLHTRVALTIINLIGASTSK---ILLGFMVATGFLSMFVSNTAAVMIMIPIGLAIIKEAHDLQEANTNQTSIQKFEKSLVLAIGYAGTIGGLGTL 219          
The following BLAST results are available for this feature:
BLAST of CK938672 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
TDT_ARATH6.704e-8670.04Tonoplast dicarboxylate transporter OS=Arabidopsis... [more]
SDCS_STAAW9.209e-2737.89Sodium-dependent dicarboxylate transporter sdcS OS... [more]
SDCS_STAAS9.209e-2737.89Sodium-dependent dicarboxylate transporter sdcS OS... [more]
SDCS_STAAR9.209e-2737.89Sodium-dependent dicarboxylate transporter sdcS OS... [more]
SDCS_STAAN9.209e-2737.89Sodium-dependent dicarboxylate transporter sdcS OS... [more]
SDCS_STAAM9.209e-2737.89Sodium-dependent dicarboxylate transporter sdcS OS... [more]
SDCS_STAAC9.209e-2737.89Sodium-dependent dicarboxylate transporter sdcS OS... [more]
SDCS_STAAB9.209e-2737.89Sodium-dependent dicarboxylate transporter sdcS OS... [more]
SDCS_STAA89.209e-2737.89Sodium-dependent dicarboxylate transporter sdcS OS... [more]
SDCS_STAA39.209e-2737.89Sodium-dependent dicarboxylate transporter sdcS OS... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004439_H04 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IVF_H04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938672 ID=CK938672; Name=CK938672; organism=Citrus sinensis; type=EST; length=739bp
GGGGGAACGACACCTTCAATTTTCTCTCGTATCGTGTTACACGTTCACTG
CAAAATGAACGGTGACCACGAAGCTCATCCAAATTCTGGTGACATCAAGG
CGCCACTCCTACCTTCCCATCGTCAAATCCAACGGTCACCAAGCTCCCAC
TTCACATTGAAAACCATTTTCACACCAAACAATTTCTACATCCTCCTAGG
ACCTCTCCTGTGCGCTGTTATATGTGTATGTGTGAAGCTCGATGGGCAGG
CGACAAGCAGGAACATGTTGGGTGTTCTTGCTTGGGTCTTCGCTTGGTGG
CTCACGGAGGCCGTACCCATGCCCATTACCTCTATGGCGCCTCTGTTTCT
GTTTCCTCTGTTTGGTATCTCTTCTGCTGACACCGTTGCTCATTCTTACA
TGGATGATGTTATTGCCCTCGTTCTTGGTAGCTTTATTCTTGCTCTTGCC
GTTGAGCACTACAACATTCACAAAAGATTGGCCTTAAATATAACTATTCT
ATTCTGTGGAGAGCCAATGAATCCGCCCTTGCTGCTTCTTGGGATATGTG
GCACGACAGCATTCGTGAGCATGTGGATGCATAACGTGGCAGCAGCAGTG
ATCATGATGCCAGTGGCCACTGGGATCTTACAGAACTTGCCAGAGGTTCC
TCTTCAATCAACCCTTGTTAGGAAGTATTGCAAAGCTGTGGTGCTCGGGG
TCATCTACTCTGCAGCCGTAGGAGGGATGAGCACACTTA
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