CK938616
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK938616 vs. ExPASy Swiss-Prot
Match: PSD13_DICDI (26S proteasome non-ATPase regulatory subunit 13 OS=Dictyostelium discoideum GN=psmD13 PE=2 SV=1) HSP 1 Score: 170.244 bits (430), Expect = 8.207e-42 Identity = 85/218 (38.99%), Postives = 133/218 (61.01%), Query Frame = 3 Query: 3 VSSPYHKFHQEFAEFYKCALLYLAYTSVEXXXXXXXXXXXXXXXXXXXXGDNIYNFGEQLAHPIINSLTGTKV*WLYYILQAFNSGDLIRYQELCRVHNAALRAQPALVENEKKLLEKINILCLMEIIFSRPSEDRTIPLSIIAERTKLSIEDVEHLRMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIRSLRDRLDSWWGKVHTALLSIKTET 656 VS+ YH + +EFYK AL+YL+Y +E G+N+Y FG+ +A+PI+ +L G++ WL L+AFN GD+ +++ L H + Q A+ N +KL +KI+IL L+E+ F PS+ R+I S IA+ TKL + ++EHL MKSLS++LI+G IDQ +H++WV PR+L + QI S+ +R+ W K T+L ++ +T Sbjct: 163 VSTDYHMAKSQASEFYKNALMYLSYCKLETISQEEQASLAYNLCIAALVGENVYGFGDLIANPILKALEGSQHNWLIAFLKAFNIGDIQQFEGLMSQHRDIISTQTAITNNMQKLRQKISILSLLELAFRTPSDKRSISFSKIAQATKLPLGEIEHLLMKSLSLNLIKGSIDQTVEIIHITWVTPRILDLNQINSMNNRIAEWTEKAKTSLRLVEDDT 380
BLAST of CK938616 vs. ExPASy Swiss-Prot
Match: PSD13_RAT (26S proteasome non-ATPase regulatory subunit 13 OS=Rattus norvegicus GN=Psmd13 PE=1 SV=1) HSP 1 Score: 153.295 bits (386), Expect = 1.038e-36 Identity = 84/215 (39.07%), Postives = 123/215 (57.21%), Query Frame = 3 Query: 3 VSSPYHKFHQEFAEFYKCALLYLAYTSVEXXXXXXXXXXXXXXXXXXXXGDNIYNFGEQLAHPIINSLTGTKV*WLYYILQAFNSGDLIRYQELCRVHNAALRAQPALVENEKKLLEKINILCLMEIIFSRPSEDRTIPLSIIAERTKLSIEDVEHLRMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIRSLRDRLDSWWGKVHTALLSIK 647 +SS Y++ A +YK AL +L ++ G+ ++NFGE L HP++ SL T WL L AFNSGD+ R+Q L +A QP L NE +LL KI +LCLME+ F+RP+ R + IA+ K+++ VE L MK+LSV L+ G ID+V+ VH++WVQPRVL + QI+ ++DRL+ W V + L ++ Sbjct: 158 LSSKYYQTIGNHASYYKDALRFLGCVDIKDLPVSEQQERAFTLGLAGLLGEGVFNFGELLMHPVLESLRNTDRQWLIDTLYAFNSGDVDRFQTL----KSAWGQQPDLAANEAQLLRKIQLLCLMEMTFTRPANHRQLTFEEIAKSAKITVNKVELLVMKALSVGLVRGSIDEVDKRVHMTWVQPRVLDLQQIKGMKDRLELWCTDVKSMELLVE 368
BLAST of CK938616 vs. ExPASy Swiss-Prot
Match: PSD13_BOVIN (26S proteasome non-ATPase regulatory subunit 13 OS=Bos taurus GN=PSMD13 PE=2 SV=1) HSP 1 Score: 152.91 bits (385), Expect = 1.356e-36 Identity = 82/203 (40.39%), Postives = 118/203 (58.13%), Query Frame = 3 Query: 3 VSSPYHKFHQEFAEFYKCALLYLAYTSVEXXXXXXXXXXXXXXXXXXXXGDNIYNFGEQLAHPIINSLTGTKV*WLYYILQAFNSGDLIRYQELCRVHNAALRAQPALVENEKKLLEKINILCLMEIIFSRPSEDRTIPLSIIAERTKLSIEDVEHLRMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIRSLRDRLDSW 611 +SS Y++ A +YK AL +L ++ GD ++NFGE L HP++ SL T WL L AFNSG++ R+Q L A QP L NE +LL KI +LCLME+ F+RP+ R + IA K+++ +VE L MK+LSV L++G ID+V+ VH++WVQPRVL + QI+ ++DRL+ W Sbjct: 158 LSSKYYQTIGNHASYYKDALRFLGCVDIKDLPVSEQQERAFTLGLAGLLGDGVFNFGELLMHPVLESLRDTDRQWLIDTLYAFNSGNVERFQTL----KTAWGQQPDLAANEAQLLRKIQLLCLMEMTFTRPANHRQLTFEEIARSAKITVNEVELLVMKALSVGLVKGSIDEVDKRVHMTWVQPRVLDLQQIKGMKDRLEFW 356
BLAST of CK938616 vs. ExPASy Swiss-Prot
Match: PSD13_HUMAN (26S proteasome non-ATPase regulatory subunit 13 OS=Homo sapiens GN=PSMD13 PE=1 SV=1) HSP 1 Score: 152.14 bits (383), Expect = 2.313e-36 Identity = 81/203 (39.90%), Postives = 119/203 (58.62%), Query Frame = 3 Query: 3 VSSPYHKFHQEFAEFYKCALLYLAYTSVEXXXXXXXXXXXXXXXXXXXXGDNIYNFGEQLAHPIINSLTGTKV*WLYYILQAFNSGDLIRYQELCRVHNAALRAQPALVENEKKLLEKINILCLMEIIFSRPSEDRTIPLSIIAERTKLSIEDVEHLRMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIRSLRDRLDSW 611 +SS Y++ A +YK AL +L ++ G+ ++NFGE L HP++ SL T WL L AFNSG++ R+Q L A QP L NE +LL KI +LCLME+ F+RP+ R + IA+ K+++ +VE L MK+LSV L++G ID+V+ VH++WVQPRVL + QI+ ++DRL+ W Sbjct: 158 LSSKYYQTIGNHASYYKDALRFLGCVDIKDLPVSEQQERAFTLGLAGLLGEGVFNFGELLMHPVLESLRNTDRQWLIDTLYAFNSGNVERFQTL----KTAWGQQPDLAANEAQLLRKIQLLCLMEMTFTRPANHRQLTFEEIAKSAKITVNEVELLVMKALSVGLVKGSIDEVDKRVHMTWVQPRVLDLQQIKGMKDRLEFW 356
BLAST of CK938616 vs. ExPASy Swiss-Prot
Match: PSD13_CHICK (26S proteasome non-ATPase regulatory subunit 13 OS=Gallus gallus GN=PSMD13 PE=1 SV=1) HSP 1 Score: 150.984 bits (380), Expect = 5.153e-36 Identity = 82/203 (40.39%), Postives = 119/203 (58.62%), Query Frame = 3 Query: 3 VSSPYHKFHQEFAEFYKCALLYLAYTSVEXXXXXXXXXXXXXXXXXXXXGDNIYNFGEQLAHPIINSLTGTKV*WLYYILQAFNSGDLIRYQELCRVHNAALRAQPALVENEKKLLEKINILCLMEIIFSRPSEDRTIPLSIIAERTKLSIEDVEHLRMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIRSLRDRLDSW 611 +SS Y++ A +YK AL +L V+ G+ +YNFGE L HP++ SL T WL L AFNSG++ +Q L +A QP L NE LL+KI +LCLME+ F+RP+ R + IA+ K+++ +VE L MK+LSV L++G ID+V+ VH++WVQPRVL + QI+ ++DRL+ W Sbjct: 158 LSSKYYQTIGNHASYYKDALRFLGCIDVKDLPVSEQQERAFTLGLAGLLGEGVYNFGELLMHPVLESLRSTDRQWLIDTLYAFNSGNVETFQAL----KSAWGQQPDLAANEALLLQKIQLLCLMEMTFTRPANHRQLTFEEIAKSAKVTVNEVELLVMKALSVGLVKGSIDEVDKRVHMTWVQPRVLDLQQIKGMKDRLEFW 356
BLAST of CK938616 vs. ExPASy Swiss-Prot
Match: PSD13_MOUSE (26S proteasome non-ATPase regulatory subunit 13 OS=Mus musculus GN=Psmd13 PE=1 SV=1) HSP 1 Score: 149.058 bits (375), Expect = 1.958e-35 Identity = 81/203 (39.90%), Postives = 116/203 (57.14%), Query Frame = 3 Query: 3 VSSPYHKFHQEFAEFYKCALLYLAYTSVEXXXXXXXXXXXXXXXXXXXXGDNIYNFGEQLAHPIINSLTGTKV*WLYYILQAFNSGDLIRYQELCRVHNAALRAQPALVENEKKLLEKINILCLMEIIFSRPSEDRTIPLSIIAERTKLSIEDVEHLRMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIRSLRDRLDSW 611 +SS Y++ A +YK AL +L ++ G+ ++NFGE L HP++ SL T WL L AFNSG + R+Q L A QP L NE +LL KI +LCLME+ F+RP+ R + IA+ K+++ VE L MK+LSV L+ G ID+V+ VH++WVQPRVL + QI+ ++DRL+ W Sbjct: 158 LSSKYYQTIGNHASYYKDALRFLGCVDIKDLPVSEQQERAFTLGLAGLLGEGVFNFGELLMHPVLESLRDTDRQWLIDTLYAFNSGAVDRFQTL----KCAWGQQPDLAANEAQLLRKIQLLCLMEMTFTRPANHRQLTFEEIAKSAKITVNKVELLVMKALSVGLVRGSIDEVDKRVHMTWVQPRVLDLQQIKGMKDRLELW 356
BLAST of CK938616 vs. ExPASy Swiss-Prot
Match: RPN9_SCHPO (Probable 26S proteasome regulatory subunit rpn9 OS=Schizosaccharomyces pombe GN=rpn9 PE=2 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 9.740e-27 Identity = 71/203 (34.98%), Postives = 107/203 (52.71%), Query Frame = 3 Query: 3 VSSPYHKFHQEFAEFYKCALLYLAYTSVEXXXXXXXXXXXXXXXXXXXXGDNIYNFGEQLAHPIINSLTGTKV*WLYYILQAFNSGDLIRYQELCRVHNAALRAQPALVENEKKLLEKINILCLMEIIFSRPSEDRTIPLSIIAERTKLSIEDVEHLRMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIRSLRDRLDSW 611 VS+ Y+K ++A++Y+ LLYL+ ++ GD IYNFGE L HP+ L GT+ WL+ ++ A N GDL ++ L + P L + L +KI ++ L+E++F P RT+ IA T++ +VE L M++LSV LI G+ID+V V +S VQ R+L QI S+ RL W Sbjct: 164 VSADYYKAKADYAQYYRHCLLYLSCIDLDKCSHTELVERAVDLSVAAILGD-IYNFGELLLHPVFELLVGTQHEWLHDLVIAMNVGDLPLFERLM----GQINKMPLLQSSVALLGQKIRLMALIELVFQLPPNQRTLTFDTIARATRIPSNEVELLIMRALSVGLITGVIDEVTQIVTISSVQSRILNHSQIASMESRLREW 361
BLAST of CK938616 vs. ExPASy Swiss-Prot
Match: RPN9_YEAST (26S proteasome regulatory subunit RPN9 OS=Saccharomyces cerevisiae GN=RPN9 PE=1 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 6.980e-25 Identity = 69/204 (33.82%), Postives = 108/204 (52.94%), Query Frame = 3 Query: 6 SSPYHKFHQEFAEFYKCALLYLAYTSVEXXXXXXXXXXXXXXXXXXXX-GDNIYNFGEQLAHPIINSLTG-TKV*WLYYILQAFNSGDLIRYQELCRVHNAALRAQPALVENEKKLLEKINILCLMEIIFSRPSEDRTIPLSIIAERTKLSIEDVEHLRMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIRSLRDRLDSW 611 +S Y KF +F FY +LLYL+ GD IYNFGE L HPI+ ++ + WL+ +L A GD ++ L +V + + P L ++E L +KI ++ L+E +F + R + I++ T L ++VEHL M+++S+ L++G IDQV V +SWVQPR++ QI ++DRL W Sbjct: 175 NSQYFKFKNDFNSFYYTSLLYLSTLEPSTSITLAERQQLAYDLSISALLGDKIYNFGELLHHPIMETIVNDSNYDWLFQLLNALTVGDFDKFDSLIKVQISKI---PILAQHESFLRQKICLMTLIETVFVK--NIRMLSFEDISKATHLPKDNVEHLVMRAISLGLLKGSIDQVNELVTISWVQPRIISGDQITKMKDRLVEW 373 The following BLAST results are available for this feature:
BLAST of CK938616 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 8
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CK938616 ID=CK938616; Name=CK938616; organism=Citrus sinensis; type=EST; length=657bpback to top |