FC921792

Overview
NameFC921792
Unique NameFC921792
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length373
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3459 contig Csv1_Contig3459:240..612. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921792 vs. ExPASy Swiss-Prot
Match: IDH3_ARATH (Isocitrate dehydrogenase [NAD] regulatory subunit 3, mitochondrial OS=Arabidopsis thaliana GN=IDH3 PE=1 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 1.210e-45
Identity = 88/121 (72.73%), Postives = 107/121 (88.43%), Query Frame = 3
Query:    9 RSLPILKQILSKSSDQCSPFLTPTRSVTYMPRPGDGAPRAVTLLPGDGIGPLVTGAVEQVMEAMHAPVYFEKCEVHGDMKRVPEEVIKSIKKNKVCLEGGLATPMGGGVSSLNMQLRRELD 371
            RS+ I  ++L+      SPF + +RS+TYMPRPGDGAPR VTL+PGDGIGPLVTGAVEQVMEAMHAPV+FE+ EV G+M++VPEEVI+S+K+NKVCL+GGLATP+GGGVSSLNMQLR+ELD
Sbjct:    4 RSVSIFNRLLANPP---SPFTSLSRSITYMPRPGDGAPRTVTLIPGDGIGPLVTGAVEQVMEAMHAPVHFERYEVLGNMRKVPEEVIESVKRNKVCLKGGLATPVGGGVSSLNMQLRKELD 121          
BLAST of FC921792 vs. ExPASy Swiss-Prot
Match: IDH1_ARATH (Isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial OS=Arabidopsis thaliana GN=IDH1 PE=1 SV=2)

HSP 1 Score: 175.252 bits (443), Expect = 8.671e-44
Identity = 86/121 (71.07%), Postives = 102/121 (84.30%), Query Frame = 3
Query:    9 RSLPILKQILSKSSDQCSPFLTPTRSVTYMPRPGDGAPRAVTLLPGDGIGPLVTGAVEQVMEAMHAPVYFEKCEVHGDMKRVPEEVIKSIKKNKVCLEGGLATPMGGGVSSLNMQLRRELD 371
            RSL +LK +   ++         TRSVTYMPRPGDGAPRAVTL+PGDGIGPLVT AVEQVMEAMHAP++FEK +VHG+M RVP EV++SI+KNKVCL+GGL TP+GGGVSSLN+QLR+ELD
Sbjct:    4 RSLTLLKNLARNANGSG----IQTRSVTYMPRPGDGAPRAVTLIPGDGIGPLVTNAVEQVMEAMHAPIFFEKYDVHGEMSRVPPEVMESIRKNKVCLKGGLKTPVGGGVSSLNVQLRKELD 120          
BLAST of FC921792 vs. ExPASy Swiss-Prot
Match: IDH2_ARATH (Isocitrate dehydrogenase [NAD] regulatory subunit 2, mitochondrial OS=Arabidopsis thaliana GN=IDH2 PE=1 SV=2)

HSP 1 Score: 167.548 bits (423), Expect = 1.808e-41
Identity = 83/121 (68.60%), Postives = 98/121 (80.99%), Query Frame = 3
Query:    9 RSLPILKQILSKSSDQCSPFLTPTRSVTYMPRPGDGAPRAVTLLPGDGIGPLVTGAVEQVMEAMHAPVYFEKCEVHGDMKRVPEEVIKSIKKNKVCLEGGLATPMGGGVSSLNMQLRRELD 371
            +S  +LK + S +S         TRSVTYMPRPGDG PR VTL+PGDG+GPLVT AV+QVMEAMHAPVYFE  EVHGDMK +PE +++SIKKNKVCL+GGL TP+GGGVSSLN+ LR+ELD
Sbjct:    4 QSFSLLKNLRSIASGS----KIQTRSVTYMPRPGDGKPRPVTLIPGDGVGPLVTNAVQQVMEAMHAPVYFEPFEVHGDMKSLPEGLLESIKKNKVCLKGGLKTPVGGGVSSLNVNLRKELD 120          
BLAST of FC921792 vs. ExPASy Swiss-Prot
Match: IDH2_SCHPO (Isocitrate dehydrogenase [NAD] subunit 2, mitochondrial OS=Schizosaccharomyces pombe GN=idh2 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.350e-12
Identity = 34/82 (41.46%), Postives = 57/82 (69.51%), Query Frame = 3
Query:  129 VTLLPGDGIGPLVTGAVEQVMEAMHAPVYFEKCEVHGDMKR----VPEEVIKSIKKNKVCLEGGLATPMGGGVSSLNMQLRR 362
            VT++ GDGIGP +  +VE++ +A   P+ +E+ +V+  +K     +P++  +S++KNKV L+G LATP+G G  S+N+ LRR
Sbjct:   48 VTMIAGDGIGPEIAQSVERIFKAAKVPIEWERVKVYPILKNGTTTIPDDAKESVRKNKVALKGPLATPIGKGHVSMNLTLRR 129          
BLAST of FC921792 vs. ExPASy Swiss-Prot
Match: IDHA_DICDI (Isocitrate dehydrogenase [NAD] regulatory subunit A, mitochondrial OS=Dictyostelium discoideum GN=idhA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.303e-12
Identity = 36/78 (46.15%), Postives = 56/78 (71.79%), Query Frame = 3
Query:  129 VTLLPGDGIGPLVTGAVEQVMEAMHAPVYFEKCEVHGDMKRVPEEVIKSIKKNKVCLEGGLATPMGGGVSSLNMQLRR 362
            VTL+PGDGIGP ++ +V++V  A+ AP+ +E   V  +   + +EVI+SI KNK+ L+G ++TP+G G  SLN+ LR+
Sbjct:   26 VTLIPGDGIGPEISESVKRVFSAVKAPIEWETVVVDANTG-ISKEVIESISKNKIGLKGPISTPIGTGHQSLNLGLRK 102          
BLAST of FC921792 vs. ExPASy Swiss-Prot
Match: IDH3A_CAEEL (Probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial OS=Caenorhabditis elegans GN=F43G9.1 PE=1 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 3.928e-12
Identity = 37/93 (39.78%), Postives = 57/93 (61.29%), Query Frame = 3
Query:  102 RPGDGAPRAVTLLPGDGIGPLVTGAVEQVMEAMHAPVYFEKCEV-----HGDMKRVPEEVIKSIKKNKVCLEGGLATPMGGGVSSLNMQLRRE 365
            R   G  R VTL+PGDGIGP ++ +V+++ EA  AP+ ++  +V        + R+P   I+ +  NKV L+G L TP+G G  SLN+ +R+E
Sbjct:   18 RYSSGDVRRVTLIPGDGIGPEISASVQKIFEAADAPIAWDPVDVTPVKGRDGVFRIPSRCIELMHANKVGLKGPLETPIGKGHRSLNLAVRKE 110          
BLAST of FC921792 vs. ExPASy Swiss-Prot
Match: IDH2_YEAST (Isocitrate dehydrogenase [NAD] subunit 2, mitochondrial OS=Saccharomyces cerevisiae GN=IDH2 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.701e-12
Identity = 36/95 (37.89%), Postives = 57/95 (60.00%), Query Frame = 3
Query:   90 TYMPRPGDGAPRAVTLLPGDGIGPLVTGAVEQVMEAMHAPVYFEKCEVH----GDMKRVPEEVIKSIKKNKVCLEGGLATPMGGGVSSLNMQLRR 362
            T  P P  G    V+ + GDGIGP ++ +V+++  A + P+ +E C+V       +  +P+  ++SI KN V L+G LATP+G G  SLN+ LR+
Sbjct:   27 TGKPNPSTGK-YTVSFIEGDGIGPEISKSVKKIFSAANVPIEWESCDVSPIFVNGLTTIPDPAVQSITKNLVALKGPLATPIGKGHRSLNLTLRK 120          
BLAST of FC921792 vs. ExPASy Swiss-Prot
Match: IDH3A_PONAB (Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial OS=Pongo abelii GN=IDH3A PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.752e-12
Identity = 42/117 (35.90%), Postives = 64/117 (54.70%), Query Frame = 3
Query:   36 LSKSSDQCSPFLTPTRSVTYMPRPGDGAPRAVTLLPGDGIGPLVTGAVEQVMEAMHAPVYFEKCEV-----HGDMKRVPEEVIKSIKKNKVCLEGGLATPMGGGVSSLNMQLRRELD 371
            +SK S     F  P +    + R   G  + VTL+PGDGIGP ++ AV ++ +A  AP+ +E+  V      G    +P E  +S+ KNK+ L+G L TP+  G  S+N+ LR+  D
Sbjct:    7 ISKVSRLLGAFHNPKQ----VTRGFTGGVQTVTLIPGDGIGPEISAAVMKIFDAAKAPIQWEERNVTAIQGPGGKWMIPSEAKESMDKNKMGLKGPLKTPIAAGHPSMNLLLRKTFD 119          
BLAST of FC921792 vs. ExPASy Swiss-Prot
Match: IDH3A_HUMAN (Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial OS=Homo sapiens GN=IDH3A PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.752e-12
Identity = 42/117 (35.90%), Postives = 64/117 (54.70%), Query Frame = 3
Query:   36 LSKSSDQCSPFLTPTRSVTYMPRPGDGAPRAVTLLPGDGIGPLVTGAVEQVMEAMHAPVYFEKCEV-----HGDMKRVPEEVIKSIKKNKVCLEGGLATPMGGGVSSLNMQLRRELD 371
            +SK S     F  P +    + R   G  + VTL+PGDGIGP ++ AV ++ +A  AP+ +E+  V      G    +P E  +S+ KNK+ L+G L TP+  G  S+N+ LR+  D
Sbjct:    7 ISKVSRLLGAFHNPKQ----VTRGFTGGVQTVTLIPGDGIGPEISAAVMKIFDAAKAPIQWEERNVTAIQGPGGKWMIPSEAKESMDKNKMGLKGPLKTPIAAGHPSMNLLLRKTFD 119          
BLAST of FC921792 vs. ExPASy Swiss-Prot
Match: IDH3A_MACFA (Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial (Fragment) OS=Macaca fascicularis GN=IDH3A PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.143e-11
Identity = 36/91 (39.56%), Postives = 55/91 (60.44%), Query Frame = 3
Query:  114 GAPRAVTLLPGDGIGPLVTGAVEQVMEAMHAPVYFEKCEV-----HGDMKRVPEEVIKSIKKNKVCLEGGLATPMGGGVSSLNMQLRRELD 371
            G  + VTL+PGDGIGP ++ AV ++ +A  AP+ +E+  V      G    +P E  +S+ KNK+ L+G L TP+  G  S+N+ LR+  D
Sbjct:   10 GGVQTVTLIPGDGIGPEISAAVMKIFDAAKAPIQWEERNVTAIQGPGGKWMIPSEAKESMDKNKMGLKGPLKTPIAAGHPSMNLLLRKTFD 100          
The following BLAST results are available for this feature:
BLAST of FC921792 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
IDH3_ARATH1.210e-4572.73Isocitrate dehydrogenase [NAD] regulatory subunit ... [more]
IDH1_ARATH8.671e-4471.07Isocitrate dehydrogenase [NAD] regulatory subunit ... [more]
IDH2_ARATH1.808e-4168.60Isocitrate dehydrogenase [NAD] regulatory subunit ... [more]
IDH2_SCHPO1.350e-1241.46Isocitrate dehydrogenase [NAD] subunit 2, mitochon... [more]
IDHA_DICDI2.303e-1246.15Isocitrate dehydrogenase [NAD] regulatory subunit ... [more]
IDH3A_CAEEL3.928e-1239.78Probable isocitrate dehydrogenase [NAD] subunit al... [more]
IDH2_YEAST6.701e-1237.89Isocitrate dehydrogenase [NAD] subunit 2, mitochon... [more]
IDH3A_PONAB8.752e-1235.90Isocitrate dehydrogenase [NAD] subunit alpha, mito... [more]
IDH3A_HUMAN8.752e-1235.90Isocitrate dehydrogenase [NAD] subunit alpha, mito... [more]
IDH3A_MACFA1.143e-1139.56Isocitrate dehydrogenase [NAD] subunit alpha, mito... [more]

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Properties
Property NameValue
Genbank descriptionC06052D08T7 RindPdigS Citrus sinensis cDNA clone C06052D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921792 ID=FC921792; Name=FC921792; organism=Citrus sinensis; type=EST; length=373bp
CGCGGGGGCGGTCCCTACCGATCCTCAAACAAATACTTTCAAAGTCTTCC
GACCAGTGCTCCCCGTTCCTCACCCCGACCCGATCCGTAACCTACATGCC
GCGACCCGGAGATGGCGCTCCACGCGCAGTGACTCTGCTTCCAGGCGACG
GAATTGGACCGTTAGTGACCGGTGCCGTCGAGCAAGTAATGGAAGCGATG
CACGCGCCAGTATACTTCGAGAAGTGCGAGGTCCACGGGGACATGAAGCG
AGTGCCTGAAGAAGTGATCAAATCGATTAAGAAGAATAAGGTTTGCCTGG
AAGGCGGCCTGGCCACGCCGATGGGCGGCGGGGTGAGTTCATTGAACATG
CAGTTGAGGAGGGAGTTGGATTC
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