FC921784

Overview
NameFC921784
Unique NameFC921784
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length373
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3459 contig Csv1_Contig3459:240..612. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921784 vs. ExPASy Swiss-Prot
Match: IDH3_ARATH (Isocitrate dehydrogenase [NAD] regulatory subunit 3, mitochondrial OS=Arabidopsis thaliana GN=IDH3 PE=1 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 4.598e-45
Identity = 87/122 (71.31%), Postives = 107/122 (87.70%), Query Frame = 3
Query:    6 RRSLPILKQILSKSSDQCSPFLTPTRSVTYMPRPGDGAPRAVTLLPGDGIGPLVTGAVEQVMEAMHAPVYFEKCEVHGDMKRVPEEVIKSIKKNKVCLEGGLATPMGGGVSSLNLLLRRELD 371
            RRS+ I  ++L+      SPF + +RS+TYMPRPGDGAPR VTL+PGDGIGPLVTGAVEQVMEAMHAPV+FE+ EV G+M++VPEEVI+S+K+NKVCL+GGLATP+GGGVSSLN+ LR+ELD
Sbjct:    3 RRSVSIFNRLLANPP---SPFTSLSRSITYMPRPGDGAPRTVTLIPGDGIGPLVTGAVEQVMEAMHAPVHFERYEVLGNMRKVPEEVIESVKRNKVCLKGGLATPVGGGVSSLNMQLRKELD 121          
BLAST of FC921784 vs. ExPASy Swiss-Prot
Match: IDH1_ARATH (Isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial OS=Arabidopsis thaliana GN=IDH1 PE=1 SV=2)

HSP 1 Score: 174.481 bits (441), Expect = 1.479e-43
Identity = 86/122 (70.49%), Postives = 102/122 (83.61%), Query Frame = 3
Query:    6 RRSLPILKQILSKSSDQCSPFLTPTRSVTYMPRPGDGAPRAVTLLPGDGIGPLVTGAVEQVMEAMHAPVYFEKCEVHGDMKRVPEEVIKSIKKNKVCLEGGLATPMGGGVSSLNLLLRRELD 371
            RRSL +LK +   ++         TRSVTYMPRPGDGAPRAVTL+PGDGIGPLVT AVEQVMEAMHAP++FEK +VHG+M RVP EV++SI+KNKVCL+GGL TP+GGGVSSLN+ LR+ELD
Sbjct:    3 RRSLTLLKNLARNANGSG----IQTRSVTYMPRPGDGAPRAVTLIPGDGIGPLVTNAVEQVMEAMHAPIFFEKYDVHGEMSRVPPEVMESIRKNKVCLKGGLKTPVGGGVSSLNVQLRKELD 120          
BLAST of FC921784 vs. ExPASy Swiss-Prot
Match: IDH2_ARATH (Isocitrate dehydrogenase [NAD] regulatory subunit 2, mitochondrial OS=Arabidopsis thaliana GN=IDH2 PE=1 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 1.060e-41
Identity = 84/122 (68.85%), Postives = 99/122 (81.15%), Query Frame = 3
Query:    6 RRSLPILKQILSKSSDQCSPFLTPTRSVTYMPRPGDGAPRAVTLLPGDGIGPLVTGAVEQVMEAMHAPVYFEKCEVHGDMKRVPEEVIKSIKKNKVCLEGGLATPMGGGVSSLNLLLRRELD 371
            R+S  +LK + S +S         TRSVTYMPRPGDG PR VTL+PGDG+GPLVT AV+QVMEAMHAPVYFE  EVHGDMK +PE +++SIKKNKVCL+GGL TP+GGGVSSLN+ LR+ELD
Sbjct:    3 RQSFSLLKNLRSIASGS----KIQTRSVTYMPRPGDGKPRPVTLIPGDGVGPLVTNAVQQVMEAMHAPVYFEPFEVHGDMKSLPEGLLESIKKNKVCLKGGLKTPVGGGVSSLNVNLRKELD 120          
BLAST of FC921784 vs. ExPASy Swiss-Prot
Match: IDH2_SCHPO (Isocitrate dehydrogenase [NAD] subunit 2, mitochondrial OS=Schizosaccharomyces pombe GN=idh2 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 7.916e-13
Identity = 35/82 (42.68%), Postives = 57/82 (69.51%), Query Frame = 3
Query:  129 VTLLPGDGIGPLVTGAVEQVMEAMHAPVYFEKCEVHGDMKR----VPEEVIKSIKKNKVCLEGGLATPMGGGVSSLNLLLRR 362
            VT++ GDGIGP +  +VE++ +A   P+ +E+ +V+  +K     +P++  +S++KNKV L+G LATP+G G  S+NL LRR
Sbjct:   48 VTMIAGDGIGPEIAQSVERIFKAAKVPIEWERVKVYPILKNGTTTIPDDAKESVRKNKVALKGPLATPIGKGHVSMNLTLRR 129          
BLAST of FC921784 vs. ExPASy Swiss-Prot
Match: IDH3A_PONAB (Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial OS=Pongo abelii GN=IDH3A PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.034e-12
Identity = 44/117 (37.61%), Postives = 65/117 (55.56%), Query Frame = 3
Query:   36 LSKSSDQCSPFLTPTRSVTYMPRPGDGAPRAVTLLPGDGIGPLVTGAVEQVMEAMHAPVYFEKCEV-----HGDMKRVPEEVIKSIKKNKVCLEGGLATPMGGGVSSLNLLLRRELD 371
            +SK S     F  P +    + R   G  + VTL+PGDGIGP ++ AV ++ +A  AP+ +E+  V      G    +P E  +S+ KNK+ L+G L TP+  G  S+NLLLR+  D
Sbjct:    7 ISKVSRLLGAFHNPKQ----VTRGFTGGVQTVTLIPGDGIGPEISAAVMKIFDAAKAPIQWEERNVTAIQGPGGKWMIPSEAKESMDKNKMGLKGPLKTPIAAGHPSMNLLLRKTFD 119          
BLAST of FC921784 vs. ExPASy Swiss-Prot
Match: IDH3A_HUMAN (Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial OS=Homo sapiens GN=IDH3A PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.034e-12
Identity = 44/117 (37.61%), Postives = 65/117 (55.56%), Query Frame = 3
Query:   36 LSKSSDQCSPFLTPTRSVTYMPRPGDGAPRAVTLLPGDGIGPLVTGAVEQVMEAMHAPVYFEKCEV-----HGDMKRVPEEVIKSIKKNKVCLEGGLATPMGGGVSSLNLLLRRELD 371
            +SK S     F  P +    + R   G  + VTL+PGDGIGP ++ AV ++ +A  AP+ +E+  V      G    +P E  +S+ KNK+ L+G L TP+  G  S+NLLLR+  D
Sbjct:    7 ISKVSRLLGAFHNPKQ----VTRGFTGGVQTVTLIPGDGIGPEISAAVMKIFDAAKAPIQWEERNVTAIQGPGGKWMIPSEAKESMDKNKMGLKGPLKTPIAAGHPSMNLLLRKTFD 119          
BLAST of FC921784 vs. ExPASy Swiss-Prot
Match: IDH3A_MACFA (Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial (Fragment) OS=Macaca fascicularis GN=IDH3A PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 1.350e-12
Identity = 38/91 (41.76%), Postives = 56/91 (61.54%), Query Frame = 3
Query:  114 GAPRAVTLLPGDGIGPLVTGAVEQVMEAMHAPVYFEKCEV-----HGDMKRVPEEVIKSIKKNKVCLEGGLATPMGGGVSSLNLLLRRELD 371
            G  + VTL+PGDGIGP ++ AV ++ +A  AP+ +E+  V      G    +P E  +S+ KNK+ L+G L TP+  G  S+NLLLR+  D
Sbjct:   10 GGVQTVTLIPGDGIGPEISAAVMKIFDAAKAPIQWEERNVTAIQGPGGKWMIPSEAKESMDKNKMGLKGPLKTPIAAGHPSMNLLLRKTFD 100          
BLAST of FC921784 vs. ExPASy Swiss-Prot
Match: IDH3A_BOVIN (Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial OS=Bos taurus GN=IDH3A PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.350e-12
Identity = 38/91 (41.76%), Postives = 56/91 (61.54%), Query Frame = 3
Query:  114 GAPRAVTLLPGDGIGPLVTGAVEQVMEAMHAPVYFEKCEV-----HGDMKRVPEEVIKSIKKNKVCLEGGLATPMGGGVSSLNLLLRRELD 371
            G  + VTL+PGDGIGP ++ AV ++ +A  AP+ +E+  V      G    +P E  +S+ KNK+ L+G L TP+  G  S+NLLLR+  D
Sbjct:   29 GGVKTVTLIPGDGIGPEISAAVMKIFDAAKAPIQWEERNVAAIQGPGGKWMIPPEAKESMDKNKMGLKGPLKTPIAAGHPSMNLLLRKTFD 119          
BLAST of FC921784 vs. ExPASy Swiss-Prot
Match: IDHA_DICDI (Isocitrate dehydrogenase [NAD] regulatory subunit A, mitochondrial OS=Dictyostelium discoideum GN=idhA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.303e-12
Identity = 37/78 (47.44%), Postives = 56/78 (71.79%), Query Frame = 3
Query:  129 VTLLPGDGIGPLVTGAVEQVMEAMHAPVYFEKCEVHGDMKRVPEEVIKSIKKNKVCLEGGLATPMGGGVSSLNLLLRR 362
            VTL+PGDGIGP ++ +V++V  A+ AP+ +E   V  +   + +EVI+SI KNK+ L+G ++TP+G G  SLNL LR+
Sbjct:   26 VTLIPGDGIGPEISESVKRVFSAVKAPIEWETVVVDANTG-ISKEVIESISKNKIGLKGPISTPIGTGHQSLNLGLRK 102          
BLAST of FC921784 vs. ExPASy Swiss-Prot
Match: IDH3A_CAEEL (Probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial OS=Caenorhabditis elegans GN=F43G9.1 PE=1 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 2.303e-12
Identity = 38/93 (40.86%), Postives = 57/93 (61.29%), Query Frame = 3
Query:  102 RPGDGAPRAVTLLPGDGIGPLVTGAVEQVMEAMHAPVYFEKCEV-----HGDMKRVPEEVIKSIKKNKVCLEGGLATPMGGGVSSLNLLLRRE 365
            R   G  R VTL+PGDGIGP ++ +V+++ EA  AP+ ++  +V        + R+P   I+ +  NKV L+G L TP+G G  SLNL +R+E
Sbjct:   18 RYSSGDVRRVTLIPGDGIGPEISASVQKIFEAADAPIAWDPVDVTPVKGRDGVFRIPSRCIELMHANKVGLKGPLETPIGKGHRSLNLAVRKE 110          
The following BLAST results are available for this feature:
BLAST of FC921784 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
IDH3_ARATH4.598e-4571.31Isocitrate dehydrogenase [NAD] regulatory subunit ... [more]
IDH1_ARATH1.479e-4370.49Isocitrate dehydrogenase [NAD] regulatory subunit ... [more]
IDH2_ARATH1.060e-4168.85Isocitrate dehydrogenase [NAD] regulatory subunit ... [more]
IDH2_SCHPO7.916e-1342.68Isocitrate dehydrogenase [NAD] subunit 2, mitochon... [more]
IDH3A_PONAB1.034e-1237.61Isocitrate dehydrogenase [NAD] subunit alpha, mito... [more]
IDH3A_HUMAN1.034e-1237.61Isocitrate dehydrogenase [NAD] subunit alpha, mito... [more]
IDH3A_MACFA1.350e-1241.76Isocitrate dehydrogenase [NAD] subunit alpha, mito... [more]
IDH3A_BOVIN1.350e-1241.76Isocitrate dehydrogenase [NAD] subunit alpha, mito... [more]
IDHA_DICDI2.303e-1247.44Isocitrate dehydrogenase [NAD] regulatory subunit ... [more]
IDH3A_CAEEL2.303e-1240.86Probable isocitrate dehydrogenase [NAD] subunit al... [more]

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Properties
Property NameValue
Genbank descriptionC06052C10T7 RindPdigS Citrus sinensis cDNA clone C06052C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921784 ID=FC921784; Name=FC921784; organism=Citrus sinensis; type=EST; length=373bp
CGCGGCGGCGGTCCCTACCGATCCTCAAACAAATACTTTCAAAGTCTTCC
GACCAGTGCTCCCCGTTCCTCACCCCGACCCGATCCGTAACCTACATGCC
GCGACCCGGAGATGGCGCTCCACGCGCAGTGACTCTGCTTCCAGGCGACG
GAATTGGACCGTTAGTGACCGGTGCCGTCGAGCAAGTAATGGAAGCGATG
CACGCGCCAGTATACTTCGAGAAGTGCGAGGTCCACGGGGACATGAAGCG
AGTGCCTGAAGAAGTGATCAAATCGATTAAGAAGAATAAGGTTTGCCTGG
AAGGCGGCCTGGCCACGCCGATGGGCGGCGGGGTGAGTTCATTGAATTTG
CTGTTGAGGAGGGAGTTGGATTC
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