CK937794

Overview
NameCK937794
Unique NameCK937794
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length780
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2058 contig Csv1_Contig2058:1..780. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK937794 vs. ExPASy Swiss-Prot
Match: FNTA_PEA (Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Pisum sativum GN=FTA PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.836e-28
Identity = 58/88 (65.91%), Postives = 69/88 (78.41%), Query Frame = 1
Query:  517 GDEQQQEAERLPLSQRPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSNERSSRSFQLTKEAICLNPGNYTVWHFRXXII 780
            G+ + +E +R+PL  RPEWSDVTPIPQDDGP+PVVPI Y  EFSE M YFRAVY++ E SSR+  LT EAI LN GNYTVWHFR  ++
Sbjct:    3 GNIEVEEDDRVPLRLRPEWSDVTPIPQDDGPSPVVPINYSEEFSEVMDYFRAVYFAKELSSRALALTAEAIGLNAGNYTVWHFRRLLL 90          
BLAST of CK937794 vs. ExPASy Swiss-Prot
Match: FNTA_ARATH (Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Arabidopsis thaliana GN=FTA PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.090e-28
Identity = 55/80 (68.75%), Postives = 66/80 (82.50%), Query Frame = 1
Query:  541 ERLPLSQRPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSNERSSRSFQLTKEAICLNPGNYTVWHFRXXII 780
            E +PLSQR EWSDV P+ QDDGPNPVVPIAYK EF ETM YFRA+Y+S+ERS R+ +LT+E + LN GNYTVWHFR  ++
Sbjct:   19 ETVPLSQRLEWSDVVPLTQDDGPNPVVPIAYKEEFRETMDYFRAIYFSDERSPRALRLTEETLLLNSGNYTVWHFRRLVL 98          
BLAST of CK937794 vs. ExPASy Swiss-Prot
Match: FNTA_SOLLC (Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Solanum lycopersicum GN=FTA PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.906e-27
Identity = 52/79 (65.82%), Postives = 65/79 (82.28%), Query Frame = 1
Query:  544 RLPLSQRPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSNERSSRSFQLTKEAICLNPGNYTVWHFRXXII 780
            R+P  +RP+W+DV P+PQDDGP PVVPIAY  +FSETM YFRA+Y ++ERS+R+ QLT EAI LNPGNYTVW FR  ++
Sbjct:   10 RIPFKERPDWADVKPVPQDDGPCPVVPIAYTEDFSETMDYFRAIYVADERSTRALQLTGEAIQLNPGNYTVWQFRRVVL 88          
BLAST of CK937794 vs. ExPASy Swiss-Prot
Match: FNTA_BOVIN (Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Bos taurus GN=FNTA PE=2 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.840e-20
Identity = 42/73 (57.53%), Postives = 55/73 (75.34%), Query Frame = 1
Query:  562 RPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSNERSSRSFQLTKEAICLNPGNYTVWHFRXXII 780
            RPEW+D+ P+PQ+DGPNPVV I Y  +F +   YFRAV   +ERS R+F+LT++AI LN  NYTVWHFR  ++
Sbjct:   65 RPEWADIDPVPQNDGPNPVVQIIYSEKFQDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLL 137          
BLAST of CK937794 vs. ExPASy Swiss-Prot
Match: FNTA_HUMAN (Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Homo sapiens GN=FNTA PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 9.133e-20
Identity = 46/111 (41.44%), Postives = 65/111 (58.56%), Query Frame = 1
Query:  448 HRDQRRKREGSVLARTTKMESDEGDEQQQEAERLPLSQRPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSNERSSRSFQLTKEAICLNPGNYTVWHFRXXII 780
            H+++     G  +A       D+G         +    R EW+D+ P+PQ+DGPNPVV I Y  +F +   YFRAV   +ERS R+F+LT++AI LN  NYTVWHFR  ++
Sbjct:   35 HKEEMAAEAGEAVASPM----DDGFVSLDSPSYVLYRDRAEWADIDPVPQNDGPNPVVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLL 141          
BLAST of CK937794 vs. ExPASy Swiss-Prot
Match: FNTA_MOUSE (Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Mus musculus GN=Fnta PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.035e-19
Identity = 41/73 (56.16%), Postives = 54/73 (73.97%), Query Frame = 1
Query:  562 RPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSNERSSRSFQLTKEAICLNPGNYTVWHFRXXII 780
            R EW+D+ P+PQ+DGPNPVV I Y  +F +   YFRAV   +ERS R+F+LT++AI LN  NYTVWHFR  ++
Sbjct:   69 RAEWADIDPVPQNDGPNPVVQIIYSEKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLL 141          
BLAST of CK937794 vs. ExPASy Swiss-Prot
Match: FNTA_RAT (Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Rattus norvegicus GN=Fnta PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.731e-19
Identity = 40/73 (54.79%), Postives = 54/73 (73.97%), Query Frame = 1
Query:  562 RPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSNERSSRSFQLTKEAICLNPGNYTVWHFRXXII 780
            R EW+D+ P+PQ+DGP+PVV I Y  +F +   YFRAV   +ERS R+F+LT++AI LN  NYTVWHFR  ++
Sbjct:   69 RAEWADIDPVPQNDGPSPVVQIIYSEKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLL 141          
BLAST of CK937794 vs. ExPASy Swiss-Prot
Match: FNTA_DICDI (Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Dictyostelium discoideum GN=fntA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.731e-19
Identity = 43/93 (46.24%), Postives = 59/93 (63.44%), Query Frame = 1
Query:  502 MESDEGDEQQQEAERLPLSQRPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSNERSSRSFQLTKEAICLNPGNYTVWHFRXXII 780
            M S E D+       +P S+RPEWSDV P+ QDDGP+P+ PI Y   F + M+YFRA+  S E+S R   L +E I  NP NYT+W++R  ++
Sbjct:    1 MSSSEEDDGY-----VPFSKRPEWSDVKPLAQDDGPHPICPILYSEVFKDKMNYFRAILKSKEKSLRVLDLLEEVIQENPSNYTIWYYRREVL 88          
BLAST of CK937794 vs. ExPASy Swiss-Prot
Match: FNTA_SCHPO (Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Schizosaccharomyces pombe GN=cwp1 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.663e-11
Identity = 32/71 (45.07%), Postives = 43/71 (60.56%), Query Frame = 1
Query:  568 EWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSNERSSRSFQLTKEAICLNPGNYTVWHFRXXII 780
            E+  +TPIPQDDG NP+  I Y   + + M+YFRA+    E S R+  LT   I  NP +YTVW +R  I+
Sbjct:   16 EYGPLTPIPQDDGENPLAKICYTTGYEQGMAYFRAIMAKKEYSLRALNLTGFLIMNNPAHYTVWAYRFQIL 86          
The following BLAST results are available for this feature:
BLAST of CK937794 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
FNTA_PEA1.836e-2865.91Protein farnesyltransferase/geranylgeranyltransfer... [more]
FNTA_ARATH4.090e-2868.75Protein farnesyltransferase/geranylgeranyltransfer... [more]
FNTA_SOLLC5.906e-2765.82Protein farnesyltransferase/geranylgeranyltransfer... [more]
FNTA_BOVIN1.840e-2057.53Protein farnesyltransferase/geranylgeranyltransfer... [more]
FNTA_HUMAN9.133e-2041.44Protein farnesyltransferase/geranylgeranyltransfer... [more]
FNTA_MOUSE2.035e-1956.16Protein farnesyltransferase/geranylgeranyltransfer... [more]
FNTA_RAT7.731e-1954.79Protein farnesyltransferase/geranylgeranyltransfer... [more]
FNTA_DICDI7.731e-1946.24Protein farnesyltransferase/geranylgeranyltransfer... [more]
FNTA_SCHPO2.663e-1145.07Protein farnesyltransferase/geranylgeranyltransfer... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004481_H03 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IIIF_H03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937794 ID=CK937794; Name=CK937794; organism=Citrus sinensis; type=EST; length=780bp
GGGGAAAGTTGAAAACTTTCTTTGCTTTTCTCGGGAAAACGGCAGAGAGA
GAAAATTGAAAAAGAGGATAGACAATACCTAGAAAGGACAGTGAGGATCA
AGAAAGGCTTTTTGGAGATGACGGCGACGAATAGAGAAAGAGACGGCCCC
AGCGCTATCAACGCGTACCCGATCCCTGCCGCTACTGTCATTTCTCAATT
TTCTTTCCGCCTTTCCTTTTTTCTTTTCCCCGGTACCCAAGCAACCTCCT
CAGCTCTCTGGGGCTTTTGAAAATTTTGGCAATTTCAAGCCCTTTCTGCA
GAATTTACTTTTAGAATTTTGTACAGTGGAAGTGCTCTATTCTTTGTGCA
AACCATAGGGCTATTTTTGTAATTATAGCTGATCTGGTACAAAGAATACT
AACGATAATATTATTTAAATTTTAATTAAAAAAAAGAAACAAAATAACAT
CGCGATCAAAGGAGAAAGAGAGAGGGTTCGGTACTAGCGAGAACAACAAA
AATGGAATCAGACGAAGGGGACGAGCAGCAGCAGGAGGCGGAGAGATTGC
CACTGAGTCAAAGACCCGAGTGGTCTGACGTCACTCCAATACCACAAGAC
GATGGCCCGAATCCAGTGGTCCCGATCGCATACAAACCAGAATTCAGCGA
AACCATGAGCTACTTCCGCGCCGTCTATTACTCCAACGAGCGATCGTCTC
GCTCCTTTCAACTCACCAAAGAAGCCATCTGCCTTAACCCCGGCAACTAC
ACTGTATGGCATTTCAGGNNNNNAATAATT
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