CK937778

Overview
NameCK937778
Unique NameCK937778
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length801
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6245 contig Csv1_Contig6245:5..805. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK937778 vs. ExPASy Swiss-Prot
Match: NIFU4_ARATH (NifU-like protein 4, mitochondrial OS=Arabidopsis thaliana GN=NIFU4 PE=2 SV=1)

HSP 1 Score: 343.584 bits (880), Expect = 7.670e-94
Identity = 172/224 (76.79%), Postives = 192/224 (85.71%), Query Frame = 1
Query:  133 SRTLSYLSNPITSQNSTLLKSIP-LSSSVQSGKWNLFRVQRRTMFIQTQPTPNPSSLMFYPGKPVMEVGSADFPNARAAMNSPLAKSLYGVDGITRVFFGSVFITVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVXLKSGIENMLMHYVPEV 801
            SR   ++S      + T   ++P L+SS+ + KWN    QRRTMFIQTQ TPNPSSLMFYPGKPVMEVGSADFPN R+A+ SPLAKS+Y +DG+ RVFFGS F+TVTKS+D SWD+LKPEIFAA+MDFYSSGQPLFLDS+ AAAKDTAI+EDDSETVAMIKELLETRIRPAVQDDGGDIEY GFDPE+G VKLRMQGACSGCPSSSV LKSGIENMLMHYV EV
Sbjct:   37 SRRSLFISATNLLNSRTKDSALPSLNSSLLAQKWNFLGGQRRTMFIQTQSTPNPSSLMFYPGKPVMEVGSADFPNVRSALGSPLAKSIYSIDGVVRVFFGSDFVTVTKSDDVSWDILKPEIFAAVMDFYSSGQPLFLDSQAAAAKDTAISEDDSETVAMIKELLETRIRPAVQDDGGDIEYCGFDPESGIVKLRMQGACSGCPSSSVTLKSGIENMLMHYVSEV 260          
BLAST of CK937778 vs. ExPASy Swiss-Prot
Match: NIFU5_ARATH (NifU-like protein 5, mitochondrial OS=Arabidopsis thaliana GN=NIFU5 PE=2 SV=1)

HSP 1 Score: 318.546 bits (815), Expect = 2.642e-86
Identity = 152/185 (82.16%), Postives = 171/185 (92.43%), Query Frame = 1
Query:  247 QRRTMFIQTQPTPNPSSLMFYPGKPVMEVGSADFPNARAAMNSPLAKSLYGVDGITRVFFGSVFITVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVXLKSGIENMLMHYVPEV 801
            QRRTMFIQTQ TPNPSSLMF PGKPVME+GSADFPN+R+AM+SPLAK+++ +DG+ RVF+GS F+TVTKS+D +WD+LKP+IFA +MDFYSSGQPLFLDS+  AAKDTAI+EDDSETVAMIKELLETRIRP+VQDDGGDIEY GFD ETG VKLRMQGACSGCPSSSV LKSGIENMLMHYV EV
Sbjct:   71 QRRTMFIQTQSTPNPSSLMFSPGKPVMEIGSADFPNSRSAMSSPLAKAIFAIDGVVRVFYGSDFVTVTKSDDVTWDILKPDIFAVVMDFYSSGQPLFLDSQATAAKDTAIHEDDSETVAMIKELLETRIRPSVQDDGGDIEYCGFDTETGIVKLRMQGACSGCPSSSVTLKSGIENMLMHYVSEV 255          
BLAST of CK937778 vs. ExPASy Swiss-Prot
Match: NFU1_DROME (NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila melanogaster GN=CG32500 PE=2 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 3.721e-56
Identity = 110/185 (59.46%), Postives = 137/185 (74.05%), Query Frame = 1
Query:  250 RRTMFIQTQPTPNPSSLMFYPGKPVMEVGSA-DFPNARAAMNSPLAKSLYGVDGITRVFFGSVFITVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVXLKSGIENMLMHYVPEV 801
            RR+MFIQTQ TPNP SL F PG  V+  G+  DFPN   A NSPLAK L+ V+G+  VFFG+ F+T++K E   W L+KPE+FA IMDF++SG P+  D++  A  DT I EDD ETV MIKELL+TRIRP VQ+DGGDI + G+  E G VKL+MQG+CS CPSS V LK+G++NML  Y+PEV
Sbjct:   64 RRSMFIQTQDTPNPESLKFLPGVDVLGKGNTYDFPNGTTAHNSPLAKLLFRVEGVKGVFFGADFVTISKQEGAEWSLIKPEVFAVIMDFFASGLPVLNDAQPNA--DTEILEDDDETVMMIKELLDTRIRPTVQEDGGDIVFMGY--EGGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQFYIPEV 244          
BLAST of CK937778 vs. ExPASy Swiss-Prot
Match: NFU1_DROSE (NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila sechellia GN=GM13534 PE=3 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 6.347e-56
Identity = 110/185 (59.46%), Postives = 137/185 (74.05%), Query Frame = 1
Query:  250 RRTMFIQTQPTPNPSSLMFYPGKPVMEVGSA-DFPNARAAMNSPLAKSLYGVDGITRVFFGSVFITVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVXLKSGIENMLMHYVPEV 801
            RR+MFIQTQ TPNP SL F PG  V+  G+  DFPN   A +SPLAK L+ V+G+  VFFG+ FIT++K E   W L+KPE+FA IMDF++SG P+  D++  A  DT I EDD ETV MIKELL+TRIRP VQ+DGGDI + G+  E G VKL+MQG+CS CPSS V LK+G++NML  Y+PEV
Sbjct:   64 RRSMFIQTQDTPNPESLKFLPGVDVLGKGNTYDFPNGTTAHSSPLAKLLFRVEGVKGVFFGADFITISKQEGAEWSLIKPEVFAVIMDFFASGLPVLNDAQPNA--DTEILEDDDETVMMIKELLDTRIRPTVQEDGGDIVFMGY--EAGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQFYIPEV 244          
BLAST of CK937778 vs. ExPASy Swiss-Prot
Match: NFU1_MOUSE (NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Mus musculus GN=Nfu1 PE=1 SV=2)

HSP 1 Score: 217.238 bits (552), Expect = 8.290e-56
Identity = 109/184 (59.24%), Postives = 138/184 (75.00%), Query Frame = 1
Query:  253 RTMFIQTQPTPNPSSLMFYPGKPVMEVGSADFPNARAAMNSPLAKSLYGVDGITRVFFGSVFITVTK-SEDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVXLKSGIENMLMHYVPEV 801
            R MFIQTQ TPNP+SL F PGKPV+E  + DFP   AA  SPLA+ L+ ++G+  VFFG  FITVTK +E+  W+LLKP+I+A IMDF++SG PL +  ET      A +E+D E VAMIKELL+TRIRP VQ+DGGD+ YRGF  E G V+L++QG+C+ CPSS + LKSGI+NML  Y+PEV
Sbjct:   55 RFMFIQTQDTPNPNSLKFIPGKPVLETRTMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDFITVTKENEELDWNLLKPDIYATIMDFFASGLPL-VTEETPPPPGEAGSEEDDEVVAMIKELLDTRIRPTVQEDGGDVIYRGF--EDGIVRLKLQGSCTSCPSSIITLKSGIQNMLQFYIPEV 235          
BLAST of CK937778 vs. ExPASy Swiss-Prot
Match: NFU1_DROYA (NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila yakuba GN=GE15286 PE=3 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 8.290e-56
Identity = 109/185 (58.92%), Postives = 137/185 (74.05%), Query Frame = 1
Query:  250 RRTMFIQTQPTPNPSSLMFYPGKPVMEVGSA-DFPNARAAMNSPLAKSLYGVDGITRVFFGSVFITVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVXLKSGIENMLMHYVPEV 801
            RR+MFIQTQ TPNP SL F PG  V+  G+  DFPN   A +SPLAK L+ V+G+  VFFG+ F+T++K E   W L+KPE+FA IMDF++SG P+  D++  A  DT I EDD ETV MIKELL+TRIRP VQ+DGGDI + G+  E G VKL+MQG+CS CPSS V LK+G++NML  Y+PEV
Sbjct:   64 RRSMFIQTQDTPNPDSLKFLPGVDVLGKGNTYDFPNGTTAHSSPLAKLLFRVEGVKGVFFGADFVTISKQEGAEWSLIKPEVFAVIMDFFASGLPVLHDAQPNA--DTEILEDDDETVMMIKELLDTRIRPTVQEDGGDIVFMGY--EAGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQFYIPEV 244          
BLAST of CK937778 vs. ExPASy Swiss-Prot
Match: NFU1_DROER (NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila erecta GN=GG17526 PE=3 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 8.290e-56
Identity = 109/185 (58.92%), Postives = 137/185 (74.05%), Query Frame = 1
Query:  250 RRTMFIQTQPTPNPSSLMFYPGKPVMEVGSA-DFPNARAAMNSPLAKSLYGVDGITRVFFGSVFITVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVXLKSGIENMLMHYVPEV 801
            RR+MFIQTQ TPNP SL F PG  V+  G+  DFPN   A +SPLAK L+ V+G+  VFFG+ F+T++K E   W L+KPE+FA IMDF++SG P+  D++  A  DT I EDD ETV MIKELL+TRIRP VQ+DGGDI + G+  E G VKL+MQG+CS CPSS V LK+G++NML  Y+PEV
Sbjct:   64 RRSMFIQTQDTPNPDSLKFLPGVDVLGKGNTYDFPNGTTAHSSPLAKLLFRVEGVKGVFFGADFVTISKQEGAEWSLIKPEVFAVIMDFFASGLPVLHDAQPNA--DTEILEDDDETVMMIKELLDTRIRPTVQEDGGDIVFMGY--EAGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQFYIPEV 244          
BLAST of CK937778 vs. ExPASy Swiss-Prot
Match: NFU1_DROSI (NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila simulans GN=GD15490 PE=3 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 2.412e-55
Identity = 109/185 (58.92%), Postives = 137/185 (74.05%), Query Frame = 1
Query:  250 RRTMFIQTQPTPNPSSLMFYPGKPVMEVGSA-DFPNARAAMNSPLAKSLYGVDGITRVFFGSVFITVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVXLKSGIENMLMHYVPEV 801
            RR+MFIQTQ TPNP SL F PG  V+  G+  DFP+   A +SPLAK L+ V+G+  VFFG+ FIT++K E   W L+KPE+FA IMDF++SG P+  D++  A  DT I EDD ETV MIKELL+TRIRP VQ+DGGDI + G+  E G VKL+MQG+CS CPSS V LK+G++NML  Y+PEV
Sbjct:   64 RRSMFIQTQDTPNPESLKFLPGVDVLGKGNTYDFPHGTTAHSSPLAKLLFRVEGVKGVFFGADFITISKQEGAEWSLIKPEVFAVIMDFFASGLPVLNDAQPNA--DTEILEDDDETVMMIKELLDTRIRPTVQEDGGDIVFMGY--EAGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQFYIPEV 244          
BLAST of CK937778 vs. ExPASy Swiss-Prot
Match: NFU1_DROWI (NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila willistoni GN=GK25604 PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 3.150e-55
Identity = 117/224 (52.23%), Postives = 154/224 (68.75%), Query Frame = 1
Query:  133 SRTLSYLSNPITSQNSTLLKSIPLSSSVQSGKWNLFRVQRRTMFIQTQPTPNPSSLMFYPGKPVMEVGSA-DFPNARAAMNSPLAKSLYGVDGITRVFFGSVFITVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVXLKSGIENMLMHYVPEV 801
            SR   +L++ + +Q+S +  S P + S+      +  + +RTMFIQTQ TPNP SL F PG  V+  G+  DFP+  AA  SPLAK L+ V+G+  VFFGS FIT++K E   W L+KPE+FA IMDF++SG P+  ++   A  DT I EDD ETV MIKELL+TRIRP VQ+DGGDI +  +D   G VKL+MQG+CS CPSS V LK+G++NML  Y+PEV
Sbjct:   33 SRGFVHLTSSV-AQSSAIHVSTPSTPSL------MLIMGKRTMFIQTQDTPNPESLKFLPGVEVLGKGNTYDFPSVAAAHCSPLAKLLFRVEGVRSVFFGSDFITISKEEAAEWGLIKPEVFAVIMDFFASGLPILHEARNNA--DTEILEDDDETVMMIKELLDTRIRPTVQEDGGDIVFMSYD--NGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQFYIPEV 245          
BLAST of CK937778 vs. ExPASy Swiss-Prot
Match: NFU1_DROGR (NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila grimshawi GN=GH17809 PE=3 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 4.114e-55
Identity = 118/223 (52.91%), Postives = 152/223 (68.16%), Query Frame = 1
Query:  136 RTLSYLSNPITSQNSTLLKSIPLSSSVQSGKWNLFRVQRRTMFIQTQPTPNPSSLMFYPGKPVMEVGSA-DFPNARAAMNSPLAKSLYGVDGITRVFFGSVFITVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVXLKSGIENMLMHYVPEV 801
            +T S L+  +T Q   L K  PL +          ++ +R+MFIQTQ TPNP SL F PG  V+  G+  DFP+A AA  SPLAK L+ V+G+  VFFGS FIT++K E+  W L+KPE+FA IMDF++SG P+  ++   A  DT I EDD ETV MIKELL+TRIRP VQ+DGGDI +  +  E G VKL+MQG+CS CPSS V LK+G++NML  Y+PEV
Sbjct:   47 KTYSTLAVDLTKQQMLLRK--PLETLA-------LQITKRSMFIQTQDTPNPDSLKFLPGVEVLGKGNTYDFPSATAAHCSPLAKLLFRVEGVRAVFFGSDFITISKEENGEWGLIKPEVFAVIMDFFASGLPILHEARPNA--DTEILEDDDETVMMIKELLDTRIRPTVQEDGGDIVFISY--EKGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQFYIPEV 256          
The following BLAST results are available for this feature:
BLAST of CK937778 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
NIFU4_ARATH7.670e-9476.79NifU-like protein 4, mitochondrial OS=Arabidopsis ... [more]
NIFU5_ARATH2.642e-8682.16NifU-like protein 5, mitochondrial OS=Arabidopsis ... [more]
NFU1_DROME3.721e-5659.46NFU1 iron-sulfur cluster scaffold homolog, mitocho... [more]
NFU1_DROSE6.347e-5659.46NFU1 iron-sulfur cluster scaffold homolog, mitocho... [more]
NFU1_MOUSE8.290e-5659.24NFU1 iron-sulfur cluster scaffold homolog, mitocho... [more]
NFU1_DROYA8.290e-5658.92NFU1 iron-sulfur cluster scaffold homolog, mitocho... [more]
NFU1_DROER8.290e-5658.92NFU1 iron-sulfur cluster scaffold homolog, mitocho... [more]
NFU1_DROSI2.412e-5558.92NFU1 iron-sulfur cluster scaffold homolog, mitocho... [more]
NFU1_DROWI3.150e-5552.23NFU1 iron-sulfur cluster scaffold homolog, mitocho... [more]
NFU1_DROGR4.114e-5552.91NFU1 iron-sulfur cluster scaffold homolog, mitocho... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004482_B07 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IVF_B07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937778 ID=CK937778; Name=CK937778; organism=Citrus sinensis; type=EST; length=801bp
GGGGACAAGAGAAGAGAGCTTTCTTCAAGCTGAAGCATGAGGGGACTGGG
ACGGCTATTGCAGCGAGGTCTTTCTTCACACCGGCAGAGGCCGGGTTTCC
CCAAACAAAACGACGCCGTAGTTTATGCGTATTCCAGAACGCTGTCGTAT
TTGTCAAACCCGATCACTTCTCAAAATTCCACGTTACTAAAATCTATTCC
TCTCTCTTCTTCTGTACAATCCGGAAAATGGAATCTTTTTCGAGTGCAGA
GGAGGACAATGTTTATACAAACGCAGCCAACACCAAATCCTTCGTCTCTT
ATGTTTTATCCAGGGAAGCCTGTTATGGAAGTTGGGAGTGCAGATTTCCC
GAATGCTCGCGCAGCAATGAACTCTCCATTGGCAAAATCCCTTTACGGGG
TTGATGGTATTACTCGGGTTTTCTTTGGTTCAGTTTTCATCACTGTGACA
AAATCAGAGGATACTTCTTGGGATTTACTCAAACCTGAAATTTTTGCTGC
AATTATGGACTTTTATTCGTCAGGGCAACCACTTTTTCTAGACTCAGAAA
CTGCAGCAGCCAAAGACACAGCTATTAATGAGGATGACTCAGAAACTGTT
GCAATGATCAAAGAACTCCTCGAGACCCGTATTCGGCCAGCTGTGCAAGA
TGACGGTGGGGACATTGAGTACAGAGGATTTGATCCGGAAACAGGAACAG
TCAAATTAAGAATGCAAGGTGCATGTAGTGGCTGCCCGAGCTCGTCCGTC
ANATTAAAATCTGGCATTGAGAATATGCTTATGCACTATGTTCCTGAGGT
C
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