CK937606
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_CITSI (DNA-directed RNA polymerase subunit beta' OS=Citrus sinensis GN=rpoC1 PE=3 SV=1) HSP 1 Score: 164.081 bits (414), Expect = 1.991e-40 Identity = 76/83 (91.57%), Postives = 77/83 (92.77%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDS + R QMG KLGCPVTHVW LKRLPSYIANLLDKPLKE Sbjct: 54 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSRIRRYQMGYIKLGCPVTHVWYLKRLPSYIANLLDKPLKE 136
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_SOLTU (DNA-directed RNA polymerase subunit beta' OS=Solanum tuberosum GN=rpoC1 PE=3 SV=2) HSP 1 Score: 159.844 bits (403), Expect = 3.756e-39 Identity = 73/83 (87.95%), Postives = 76/83 (91.57%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFCERIFGPIKSGICACGNYR+IGDEKEDP+FCEQCGVEFVDS + R QMG KL CPVTHVW LKRLPSYIANLLDKPLKE Sbjct: 54 GLFCERIFGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKE 136
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_SOLLC (DNA-directed RNA polymerase subunit beta' OS=Solanum lycopersicum GN=rpoC1 PE=3 SV=2) HSP 1 Score: 159.844 bits (403), Expect = 3.756e-39 Identity = 73/83 (87.95%), Postives = 76/83 (91.57%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFCERIFGPIKSGICACGNYR+IGDEKEDP+FCEQCGVEFVDS + R QMG KL CPVTHVW LKRLPSYIANLLDKPLKE Sbjct: 54 GLFCERIFGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKE 136
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_SOLBU (DNA-directed RNA polymerase subunit beta' OS=Solanum bulbocastanum GN=rpoC1 PE=3 SV=2) HSP 1 Score: 159.844 bits (403), Expect = 3.756e-39 Identity = 73/83 (87.95%), Postives = 76/83 (91.57%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFCERIFGPIKSGICACGNYR+IGDEKEDP+FCEQCGVEFVDS + R QMG KL CPVTHVW LKRLPSYIANLLDKPLKE Sbjct: 54 GLFCERIFGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKE 136
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_NICTO (DNA-directed RNA polymerase subunit beta' OS=Nicotiana tomentosiformis GN=rpoC1 PE=3 SV=2) HSP 1 Score: 159.844 bits (403), Expect = 3.756e-39 Identity = 73/83 (87.95%), Postives = 76/83 (91.57%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFCERIFGPIKSGICACGNYR+IGDEKEDP+FCEQCGVEFVDS + R QMG KL CPVTHVW LKRLPSYIANLLDKPLKE Sbjct: 54 GLFCERIFGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKE 136
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_NICSY (DNA-directed RNA polymerase subunit beta' OS=Nicotiana sylvestris GN=rpoC1 PE=3 SV=2) HSP 1 Score: 159.844 bits (403), Expect = 3.756e-39 Identity = 73/83 (87.95%), Postives = 76/83 (91.57%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFCERIFGPIKSGICACGNYR+IGDEKEDP+FCEQCGVEFVDS + R QMG KL CPVTHVW LKRLPSYIANLLDKPLKE Sbjct: 54 GLFCERIFGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKE 136
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_CHLSC (DNA-directed RNA polymerase subunit beta' OS=Chloranthus spicatus GN=rpoC1 PE=3 SV=1) HSP 1 Score: 159.844 bits (403), Expect = 3.756e-39 Identity = 73/83 (87.95%), Postives = 76/83 (91.57%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFCERIFGPIKSGICACGNYR+IGDEKEDP+FCEQCGVEFVDS + R QMG KL CPVTHVW LKRLPSYIANLLDKPLKE Sbjct: 54 GLFCERIFGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKE 136
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_CARPA (DNA-directed RNA polymerase subunit beta' OS=Carica papaya GN=rpoC1 PE=3 SV=1) HSP 1 Score: 159.844 bits (403), Expect = 3.756e-39 Identity = 73/83 (87.95%), Postives = 76/83 (91.57%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFCERIFGPIKSGICACGNYR+IGDEKEDP+FCEQCGVEFVDS + R QMG KL CPVTHVW LKRLPSYIANLLDKPLKE Sbjct: 54 GLFCERIFGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKE 136
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_CALFG (DNA-directed RNA polymerase subunit beta' OS=Calycanthus floridus var. glaucus GN=rpoC1 PE=3 SV=1) HSP 1 Score: 159.844 bits (403), Expect = 3.756e-39 Identity = 73/83 (87.95%), Postives = 76/83 (91.57%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFCERIFGPIKSGICACGNYR+IGDEKEDP+FCEQCGVEFVDS + R QMG KL CPVTHVW LKRLPSYIANLLDKPLKE Sbjct: 54 GLFCERIFGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKE 136
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_ATRBE (DNA-directed RNA polymerase subunit beta' OS=Atropa belladonna GN=rpoC1 PE=3 SV=2) HSP 1 Score: 159.844 bits (403), Expect = 3.756e-39 Identity = 73/83 (87.95%), Postives = 76/83 (91.57%), Query Frame = 1 Query: 4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252 GLFCERIFGPIKSGICACGNYR+IGDEKEDP+FCEQCGVEFVDS + R QMG KL CPVTHVW LKRLPSYIANLLDKPLKE Sbjct: 54 GLFCERIFGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKE 136 The following BLAST results are available for this feature:
BLAST of CK937606 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CK937606 ID=CK937606; Name=CK937606; organism=Citrus sinensis; type=EST; length=252bpback to top |