CX675250
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX675250 vs. ExPASy Swiss-Prot
Match: SMBP2_MOUSE (DNA-binding protein SMUBP-2 OS=Mus musculus GN=Ighmbp2 PE=1 SV=1) HSP 1 Score: 195.282 bits (495), Expect = 2.880e-56 Identity = 105/213 (49.30%), Postives = 137/213 (64.32%), Query Frame = 1 Query: 1 GKTTTVVEIILQEVKRGSKILACAASNIAVDNIXXXXXXXXXXXXXXGHPARLLPQVLESALDAQVLRGDNSSLASDIRKEMKALNGKLLKTKDKNTRREIQKELRTLSKEERKRQQLAVTDVIKNADVVLTTLTGAVS----RKLDNTSFDLVIIDEAAQALEIACWIALLKGSRCILAGDHLQLPPTVQSVEAEKKGLGRTLFERLADLYG 627 GKTTTVVEIILQ VK+G K+L CA SNIAVDN+ GHPARLL V +LDA + R DN+ + +DIR+++ + GK KT+DK + + E++ L KE ++R++ A+ + ADVVL T TGA S + L FD+V++DE AQALE +CWI LLK +CILAGDH QLPPT S A GL R+L ERLA+ +G Sbjct: 218 GKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKKRILRLGHPARLLESVQHHSLDAVLARSDNAQIVADIRRDIDQVFGKNKKTQDKREKGNFRSEIKLLRKELKEREEAAIVQSLTAADVVLATNTGASSDGPLKLLPEDYFDVVVVDECAQALEASCWIPLLKAPKCILAGDHRQLPPTTVSHRAALAGLSRSLMERLAEKHG 430 HSP 2 Score: 45.0542 bits (105), Expect = 2.880e-56 Identity = 19/34 (55.88%), Postives = 25/34 (73.53%), Query Frame = 3 Query: 633 VTSMLTVQYRMHEHIMNWSSXELYNSKIKAHPSV 734 V MLTVQYRMH+ IM W+S +Y+ + +HPSV Sbjct: 433 VVRMLTVQYRMHQAIMCWASEAMYHGQFTSHPSV 466
BLAST of CX675250 vs. ExPASy Swiss-Prot
Match: SMBP2_RAT (DNA-binding protein SMUBP-2 OS=Rattus norvegicus GN=Ighmbp2 PE=1 SV=1) HSP 1 Score: 196.052 bits (497), Expect = 3.755e-56 Identity = 104/213 (48.83%), Postives = 139/213 (65.26%), Query Frame = 1 Query: 1 GKTTTVVEIILQEVKRGSKILACAASNIAVDNIXXXXXXXXXXXXXXGHPARLLPQVLESALDAQVLRGDNSSLASDIRKEMKALNGKLLKTKDKNTRREIQKELRTLSKEERKRQQLAVTDVIKNADVVLTTLTGAVS----RKLDNTSFDLVIIDEAAQALEIACWIALLKGSRCILAGDHLQLPPTVQSVEAEKKGLGRTLFERLADLYG 627 GKTTTVVEIILQ VK+G K+L CA SNIAVDN+ GHPARLL V + +LDA + R DN+ + +DIR+++ + GK KT+DK + + E++ L KE ++R++ A+ + ADVVL T TGA + + L FD+V++DE AQALE +CWI LLK +CILAGDH QLPPT S +A GL R+L ERLA+ +G Sbjct: 218 GKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKKQILRLGHPARLLESVQQHSLDAVLARSDNAQIVADIRRDIDQVFGKNKKTQDKREKSNFRNEIKLLRKELKEREEAAIVQSLSAADVVLATNTGASTDGPLKLLPEDYFDVVVVDECAQALEASCWIPLLKAPKCILAGDHKQLPPTTVSHKAALAGLSRSLMERLAEKHG 430 HSP 2 Score: 43.8986 bits (102), Expect = 3.755e-56 Identity = 18/34 (52.94%), Postives = 24/34 (70.59%), Query Frame = 3 Query: 633 VTSMLTVQYRMHEHIMNWSSXELYNSKIKAHPSV 734 V ML VQYRMH+ I W+S +Y+ ++ AHPSV Sbjct: 433 VVRMLAVQYRMHQAITRWASEAMYHGQLTAHPSV 466
BLAST of CX675250 vs. ExPASy Swiss-Prot
Match: SMBP2_MESAU (DNA-binding protein SMUBP-2 OS=Mesocricetus auratus GN=IGHMBP2 PE=1 SV=1) HSP 1 Score: 195.282 bits (495), Expect = 3.755e-56 Identity = 104/213 (48.83%), Postives = 137/213 (64.32%), Query Frame = 1 Query: 1 GKTTTVVEIILQEVKRGSKILACAASNIAVDNIXXXXXXXXXXXXXXGHPARLLPQVLESALDAQVLRGDNSSLASDIRKEMKALNGKLLKTKDKNTRREIQKELRTLSKEERKRQQLAVTDVIKNADVVLTTLTGAVS----RKLDNTSFDLVIIDEAAQALEIACWIALLKGSRCILAGDHLQLPPTVQSVEAEKKGLGRTLFERLADLYG 627 GKTTTVVEIILQ VK+G KIL CA SN+AVDN+ GHPARLL + +LDA + R DN+ + +DIRK++ + GK KT+DK + + E++ L KE ++R++ A+ + ADVVL T TGA S + L FD+V++DE AQALE +CWI LLK +CILAGDH QLPPT S +A GL R+L ERL + +G Sbjct: 218 GKTTTVVEIILQAVKQGLKILCCAPSNVAVDNLVERLALCKKRILRLGHPARLLESAQQHSLDAVLARSDNAQIVADIRKDIDQVFGKNKKTQDKREKSNFRNEIKLLRKELKEREEAAIVQSLTAADVVLATNTGASSDGPLKLLPENHFDVVVVDECAQALEASCWIPLLKAPKCILAGDHRQLPPTTISHKAALAGLSRSLMERLVEKHG 430 HSP 2 Score: 44.669 bits (104), Expect = 3.755e-56 Identity = 18/31 (58.06%), Postives = 24/31 (77.42%), Query Frame = 3 Query: 642 MLTVQYRMHEHIMNWSSXELYNSKIKAHPSV 734 MLTVQYRMH+ I W+S +Y+ ++ AHPSV Sbjct: 436 MLTVQYRMHQAITRWASEAMYHGQLTAHPSV 466
BLAST of CX675250 vs. ExPASy Swiss-Prot
Match: SMBP2_HUMAN (DNA-binding protein SMUBP-2 OS=Homo sapiens GN=IGHMBP2 PE=1 SV=2) HSP 1 Score: 189.889 bits (481), Expect = 1.672e-53 Identity = 102/213 (47.89%), Postives = 140/213 (65.73%), Query Frame = 1 Query: 1 GKTTTVVEIILQEVKRGSKILACAASNIAVDNIXXXXXXXXXXXXXXGHPARLLPQVLESALDAQVLRGDNSSLASDIRKEMKALNGKLLKTKDKNTRREIQKELRTLSKEERKRQQLAVTDVIKNADVVLTTLTGAVS----RKLDNTSFDLVIIDEAAQALEIACWIALLKGSRCILAGDHLQLPPTVQSVEAEKKGLGRTLFERLADLYG 627 GKTTTVVEIILQ VK+G K+L CA SNIAVDN+ GHPARLL + + +LDA + R D++ + +DIRK++ + K KT+DK + + E++ L KE ++R++ A+ + + +A+VVL T TGA + + L + FD+V+IDE AQALE +CWI LLK +CILAGDH QLPPT S +A GL +L ERLA+ YG Sbjct: 219 GKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKQRILRLGHPARLLESIQQHSLDAVLARSDSAQIVADIRKDIDQVFVKNKKTQDKREKSNFRNEIKLLRKELKEREEAAMLESLTSANVVLATNTGASADGPLKLLPESYFDVVVIDECAQALEASCWIPLLKARKCILAGDHKQLPPTTVSHKAALAGLSLSLMERLAEEYG 431 HSP 2 Score: 41.2022 bits (95), Expect = 1.672e-53 Identity = 18/34 (52.94%), Postives = 23/34 (67.65%), Query Frame = 3 Query: 633 VTSMLTVQYRMHEHIMNWSSXELYNSKIKAHPSV 734 V LTVQYRMH+ IM W+S +Y ++ AH SV Sbjct: 434 VVRTLTVQYRMHQAIMRWASDTMYLGQLTAHSSV 467
BLAST of CX675250 vs. ExPASy Swiss-Prot
Match: HCS1_SCHPO (DNA polymerase alpha-associated DNA helicase A OS=Schizosaccharomyces pombe GN=hcs1 PE=2 SV=1) HSP 1 Score: 166.392 bits (420), Expect = 4.953e-43 Identity = 97/210 (46.19%), Postives = 123/210 (58.57%), Query Frame = 1 Query: 1 GKTTTVVEIILQEVKRGSKILACAASNIAVDNIXXXXXXXXXXXXXXGHPARLLPQVLESALDAQVLRGDNSSLASDIRKEMKALNGKLLKTKDKNTRREIQKELRTLSKEERKRQQLAVTDVIKNADVVLTTLTGAVSRKLDNTSFDLVIIDEAAQALEIACWIALLKGSRCILAGDHLQLPPTVQSVEAEKKGLGRTLFERLADLYGD 630 GKT T+VEII Q V R +IL C ASN+AVDNI GHPARLLP +L+ +LD GDN + I +++ K+ KTK+ RREI K +R L K+ RK + V +++ + VV TL GA SR+L FD VIIDEA+QALE CWI LL ++ ILAGDH+QL P VQS K ++FERL GD Sbjct: 237 GKTHTLVEIIQQLVLRNKRILVCGASNLAVDNIVDRLSSSGIPMVRLGHPARLLPSILDHSLDVLSRTGDNGDVIRGISEDIDVCLSKITKTKNGRERREIYKNIRELRKDYRKYEAKTVANIVSASKVVFCTLHGAGSRQLKGQRFDAVIIDEASQALEPQCWIPLLGMNKVILAGDHMQLSPNVQS-----KRPYISMFERLVKSQGD 441 HSP 2 Score: 29.6462 bits (65), Expect = 4.953e-43 Identity = 13/28 (46.43%), Postives = 17/28 (60.71%), Query Frame = 3 Query: 633 VTSMLTVQYRMHEHIMNWSSXELYNSKI 716 V L +QYRMHE I + S Y+SK+ Sbjct: 443 VKCFLNIQYRMHELISKFPSDTFYDSKL 470
BLAST of CX675250 vs. ExPASy Swiss-Prot
Match: HCS1_YEAST (DNA polymerase alpha-associated DNA helicase A OS=Saccharomyces cerevisiae GN=HCS1 PE=1 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 9.795e-27 Identity = 76/226 (33.63%), Postives = 124/226 (54.87%), Query Frame = 1 Query: 1 GKTTTVVEIILQEVKRG--SKILACAASNIAVDNIXXXXXXXXXXXXXX--GHPARLLPQVLESALDAQVLRGDNSSLASDIRKEMKALNGKLLKTKDKNTRREIQKELRTLSKEERKRQQLAVTDVIKNADVVLTTLTGAVSRKL-----DNTS---FDLVIIDEAAQALEIACWIALL----KGSRCILAGDHLQLPPTVQSVEAEK--KGLGRTLFERLADLY 624 GKT T++E+I Q + + +IL C SNI+VD I GHPARLL +LD + +++ DI +E+ L + K K+ R+E E++ L K+ +KR+ + D+I + +V+TTL G+ SR+L D+ + FD +IIDE +QA+E CWI L+ + + +LAGD+ QLPPT+++ + + L TLF+R+ ++ Sbjct: 234 GKTFTLIELIQQLLIKNPEERILICGPSNISVDTILERLTPLVPNNLLLRIGHPARLLDSNKRHSLD---ILSKKNTIVKDISQEIDKLIQENKKLKNYKQRKENWNEIKLLRKDLKKREFKTIKDLIIQSRIVVTTLHGSSSRELCSLYRDDPNFQLFDTLIIDEVSQAMEPQCWIPLIAHQNQFHKLVLAGDNKQLPPTIKTEDDKNVIHNLETTLFDRIIKIF 456 HSP 2 Score: 33.8834 bits (76), Expect = 9.795e-27 Identity = 15/36 (41.67%), Postives = 22/36 (61.11%), Query Frame = 3 Query: 627 RXVTSMLTVQYRMHEHIMNWSSXELYNSKIKAHPSV 734 R + L VQYRM++ IM + S +YN K+ A +V Sbjct: 459 RDMVKFLNVQYRMNQKIMEFPSHSMYNGKLLADATV 494
BLAST of CX675250 vs. ExPASy Swiss-Prot
Match: Y104_METJA (Uncharacterized ATP-dependent helicase MJ0104 OS=Methanocaldococcus jannaschii GN=MJ0104 PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 4.765e-26 Identity = 79/245 (32.24%), Postives = 117/245 (47.76%), Query Frame = 1 Query: 1 GKTTTVVEIILQEVKRGS-KILACAASNIAVDNIXXXXXXXXXXXXXX--GHPARLLPQVLESALDAQVLRGDNSSLASDIR---KEMKALNGKLLK-----------------TKDKNTRREIQKE--------------LRTLSKEERKRQQLAVTDVIKNADVVLTTLTGAVSRKLDNTSFDLVIIDEAAQALEIACWIALLKGSRCILAGDHLQLPPTVQSVEAEKKGLGRTLFERLADLY 624 GKT T+ E+I+QEVK K+LA A SNIA DNI GHP R+ +++ +L + + +R KE+K K LK K K + R I KE ++ + + + + +++ ADV++ T + A S L FD+++IDE +QA+E +C I ++KG + I+AGDH QLPPTV S E + L +TLFERL Y Sbjct: 212 GKTRTITEVIVQEVKFNKHKVLATADSNIAADNILEYLIKKYPDLKVVRVGHPTRISKDLIQHSLPYLIENHEKYQEILALREKIKEIKEQRDKFLKPSPRWRRGMSDEQILKVAKRKKSYRGIPKEKIVSMAEWIIRNKKIKRIINNLDEITEKIMNEILAEADVIVATNSMAGSEILKGWEFDVIVIDEGSQAMEPSCLIPIVKGRKLIMAGDHKQLPPTVLS---ENEELKKTLFERLIKKY 453 HSP 2 Score: 36.1946 bits (82), Expect = 4.765e-26 Identity = 16/33 (48.48%), Postives = 24/33 (72.73%), Query Frame = 3 Query: 636 TSMLTVQYRMHEHIMNWSSXELYNSKIKAHPSV 734 +S+L +QYRM+E IM + + YN+K+KA SV Sbjct: 457 SSILEIQYRMNEKIMEFPNKMFYNNKLKADESV 489
BLAST of CX675250 vs. ExPASy Swiss-Prot
Match: RENT1_NEUCR (Regulator of nonsense transcripts 1 homolog OS=Neurospora crassa GN=2E4.130 PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 6.467e-17 Identity = 67/214 (31.31%), Postives = 100/214 (46.73%), Query Frame = 1 Query: 1 GKTTTVVEIILQEVKRG-SKILACAASNIAVDNIXXXXXXXXXXXXXXGHPARLLPQVLESALDAQVLRGDNSSLASDIRKEMKALNGKL-----LKTKDKNTRREIQKELRTLSKEERKRQQLAVTDVIKNADVVLTTLTGAVSRKLDNTSFDLVIIDEAAQALEIACWIALLKG-SRCILAGDHLQLPPTVQSVEAEKKGLGRTLFERLADL 621 GKT T II K S++L CA SN+AVD + L V +A + + S LA + M N +L LKT+ + +K + L+++ + ++++NADVV T GA +L F V+IDE+ Q+ E C I L+ G + +L GDH QL P + + +A K GL ++LFERL L Sbjct: 482 GKTVTSATIIYHLAKMSNSQVLVCAPSNVAVDQLCERIHRTG------------LKVVRLTAKSREDVESSVSFLALHEQVRMNTTNKELDGLVKLKTETGELSSQDEKRFKQLTRQAER-------EILQNADVVCCTCVGAGDPRLSKMKFRNVLIDESTQSAEPECMIPLVLGCKQVVLVGDHKQLGPVIMNKKAAKAGLNQSLFERLVKL 676 HSP 2 Score: 21.9422 bits (45), Expect = 6.467e-17 Identity = 9/25 (36.00%), Postives = 13/25 (52.00%), Query Frame = 3 Query: 645 LTVQYRMHEHIMNWSSXELYNSKIK 719 L VQYRMH + + S Y ++ Sbjct: 683 LKVQYRMHPCLSEFPSNMFYEGSLQ 707
BLAST of CX675250 vs. ExPASy Swiss-Prot
Match: RENT1_ARATH (Regulator of nonsense transcripts 1 homolog OS=Arabidopsis thaliana GN=UPF1 PE=1 SV=2) HSP 1 Score: 85.1149 bits (209), Expect = 8.383e-17 Identity = 65/210 (30.95%), Postives = 102/210 (48.57%), Query Frame = 1 Query: 1 GKTTTVVEIILQEVKRGS-KILACAASNIAVDNIXXXXXXXXXXXXXXGHPARLLPQVLESALDAQVLRGDNSSLASDIRKEMKALNGKLLKTKDKNTRREIQKELRTLSKEERKRQQLAVT-DVIKNADVVLTTLTGAVSRKLDNTSFDLVIIDEAAQALEIACWIALLKG-SRCILAGDHLQLPPTVQSVEAEKKGLGRTLFERLADL 621 GKT T I+ K+G ++L CA SN+AVD + +R + + S ++ L L + + E+ KL + KD+ Q EL + +++ K + A ++ ++ADV+ T GA +L N F V+IDE+ QA E C I L+ G + +L GDH QL P + +A + GL ++LFERL L Sbjct: 515 GKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSR---EAVSSPVEYLTLHYQVRHLDTSEKSELH----KLQQLKDE------QGELSSSDEKKYKNLKRATEREITQSADVICCTCVGAADLRLSNFRFRQVLIDESTQATEPECLIPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVTL 711 HSP 2 Score: 22.7126 bits (47), Expect = 8.383e-17 Identity = 9/25 (36.00%), Postives = 13/25 (52.00%), Query Frame = 3 Query: 645 LTVQYRMHEHIMNWSSXELYNSKIK 719 L VQYRMH + + S Y ++ Sbjct: 718 LQVQYRMHPALSEFPSNSFYEGTLQ 742
BLAST of CX675250 vs. ExPASy Swiss-Prot
Match: RENT1_DROME (Regulator of nonsense transcripts 1 homolog OS=Drosophila melanogaster GN=Upf1 PE=1 SV=2) HSP 1 Score: 80.8777 bits (198), Expect = 1.499e-15 Identity = 66/211 (31.28%), Postives = 96/211 (45.50%), Query Frame = 1 Query: 1 GKTTTVVEIILQEVK-RGSKILACAASNIAVDNIXXXXXXXXXXXXXXGHPARLLPQVLESALDAQV--LRGDNSSLASDIRKEMKALNGKLLKTKDKNTRREIQKELRTLSKEERKRQQLAVTDVIKNADVVLTTLTGAVSRKLDNTSFDLVIIDEAAQALEIACWIALLKGSR-CILAGDHLQLPPTVQSVEAEKKGLGRTLFERLADL 621 GKT T I+ Q VK G +L CA SN AVD + +R A+D+ V L N + E+K KL + KD+ E K R ++ A +++ ADV+ T GA +L F ++IDE+ Q+ E C + ++ G++ IL GDH QL P V +A + GL ++LFERL L Sbjct: 478 GKTVTSATIVYQLVKLHGGTVLVCAPSNTAVDQLTEKIHRTNLKVVRVCAKSR-------EAIDSPVSFLALHNQIRNMETNSELK----KLQQLKDETGELSSADE-----KRYRNLKRAAENQLLEAADVICCTCVGAGDGRLSRVKFTSILIDESMQSTEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVL 672 HSP 2 Score: 22.7126 bits (47), Expect = 1.499e-15 Identity = 9/25 (36.00%), Postives = 13/25 (52.00%), Query Frame = 3 Query: 645 LTVQYRMHEHIMNWSSXELYNSKIK 719 L VQYRMH + + S Y ++ Sbjct: 679 LEVQYRMHPELSQFPSNFFYEGSLQ 703 The following BLAST results are available for this feature:
BLAST of CX675250 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 20
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Sequences
The
following sequences are available for this feature:
EST sequence >CX675250 ID=CX675250; Name=CX675250; organism=Citrus sinensis; type=EST; length=735bpback to top |