CK937076

Overview
NameCK937076
Unique NameCK937076
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length778
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2001 contig Csv1_Contig2001:1..777. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK937076 vs. ExPASy Swiss-Prot
Match: ZFP4_ARATH (Zinc finger protein 4 OS=Arabidopsis thaliana GN=ZFP4 PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 3.226e-17
Identity = 63/164 (38.41%), Postives = 81/164 (49.39%), Query Frame = 1
Query:  139 LNLKLGGNSLSTSRDPDSPARPTTAK-VFSCNFCMRKFFSSQALGGHQNAHKRERGAAKRYQSQRM-------------------MTMMGLPVH----TNMV--RSLGVRAHSLVHKPSRDGAGVG------ARFNDADTGFGMAWTPYVLEEATDVMWPGSFR 534
            L L L   S S++ +     +P+ +K VFSCN+C RKF+SSQALGGHQNAHKRER  AKR     +                     +  LP+H     NM   R+LG+RAHS  H  S             ARFN     FG     YV ++  +++WPGSFR
Sbjct:   57 LTLPLSSTSESSNPEQQQQQQPSVSKRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRAMRMGLAGVFPGRGSSSNYAAAATAAALSCLPLHGSGNGNMTSFRTLGIRAHSSAHDVSMTRQTPETLIRNIARFNQG--YFGNCIPFYVEDDEAEMLWPGSFR 218          
BLAST of CK937076 vs. ExPASy Swiss-Prot
Match: ZFP1_ARATH (Zinc finger protein 1 OS=Arabidopsis thaliana GN=ZFP1 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.945e-16
Identity = 48/108 (44.44%), Postives = 60/108 (55.56%), Query Frame = 1
Query:  160 NSLSTSRDPDSPARPTTAKVFSCNFCMRKFFSSQALGGHQNAHKRERGAAKRYQSQRM--------------------MTMMGLPVH--TNMVRSLGVRAHSLVHKPS 417
            +S STS       +    +VFSCN+C RKF+SSQALGGHQNAHKRER  AKR Q  +M                     +M  LP+H   N   +LG++AHS +HKPS
Sbjct:   48 SSSSTSHHQHQQEQLADPRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQYYKMTLSSLPSSAFAFGHGSVSRFASMASLPLHGSVNNRSTLGIQAHSTIHKPS 155          
BLAST of CK937076 vs. ExPASy Swiss-Prot
Match: ZFP7_ARATH (Zinc finger protein 7 OS=Arabidopsis thaliana GN=ZFP7 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.943e-15
Identity = 55/136 (40.44%), Postives = 71/136 (52.21%), Query Frame = 1
Query:  139 LNLKLGGNSLSTSRDPDSPARPTTAKVFSCNFCMRKFFSSQALGGHQNAHKRERGAAKRYQSQRMMTMMGLPVHTNMVRSLGVRAHS-LVHKPSRDGAGVGARFNDADTGFGMAWTPYVL---EEATDVMWPGSFR 534
            L+LKL       ++     A P   +VFSCN+C RKF+SSQALGGHQNAHKRER  AKR      M       +T    SLG++AHS L+H        + +RF+    G+     P      +  +D  WPGSFR
Sbjct:   35 LDLKLNDTFNDDTKSTKCEANP---RVFSCNYCRRKFYSSQALGGHQNAHKRERTMAKRAMHMGRMFGHHHRPYTYTSSSLGMQAHSGLLHHTLSQPQPLVSRFH--HQGYFGNTVPLFFDYDDGGSDFFWPGSFR 165          
BLAST of CK937076 vs. ExPASy Swiss-Prot
Match: ZFP3_ARATH (Zinc finger protein 3 OS=Arabidopsis thaliana GN=ZFP3 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.712e-14
Identity = 45/83 (54.22%), Postives = 51/83 (61.45%), Query Frame = 1
Query:  205 TTAKVFSCNFCMRKFFSSQALGGHQNAHKRERGAAKRYQSQRMMTMMG----------LPVH--TNMVRSLGVRAHSLVHKPS 417
            T  K+FSCN+C R F+SSQALGGHQNAHKRER  AKR   QRM               LP H   N  RSLG++AHS+ HK S
Sbjct:   56 TEQKLFSCNYCQRTFYSSQALGGHQNAHKRERTLAKR--GQRMAASASAFGHPYGFSPLPFHGQYNNHRSLGIQAHSISHKLS 136          
The following BLAST results are available for this feature:
BLAST of CK937076 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
ZFP4_ARATH3.226e-1738.41Zinc finger protein 4 OS=Arabidopsis thaliana GN=Z... [more]
ZFP1_ARATH7.945e-1644.44Zinc finger protein 1 OS=Arabidopsis thaliana GN=Z... [more]
ZFP7_ARATH3.943e-1540.44Zinc finger protein 7 OS=Arabidopsis thaliana GN=Z... [more]
ZFP3_ARATH9.712e-1454.22Zinc finger protein 3 OS=Arabidopsis thaliana GN=Z... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004514_F11 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IF_F11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937076 ID=CK937076; Name=CK937076; organism=Citrus sinensis; type=EST; length=778bp
GCGGGGACCCTCACCAAAGTTAAGATTAGTAGNNNAATGATTATCCAGAA
AGATGAGGCAACTAATGAGAAACTTGGTGACATAACAATCGGGGATAATA
ACAATGAAGAGATTGGGGATGACAATCCTGGAGAGTGGCTGAACTTGAAG
CTAGGAGGGAATTCACTCTCGACAAGCAGAGATCCTGACTCACCAGCAAG
GCCTACTACCGCTAAGGTTTTCTCATGCAACTTCTGCATGAGGAAGTTTT
TCAGTTCACAGGCACTCGGAGGCCATCAGAACGCCCACAAGAGGGAGAGA
GGTGCAGCTAAAAGATACCAATCCCAGAGAATGATGACAATGATGGGCTT
GCCCGTCCACACTAATATGGTTCGATCACTAGGTGTCAGGGCCCATTCAC
TTGTGCACAAGCCAAGCAGAGACGGAGCTGGTGTTGGAGCAAGGTTTAAT
GATGCCGACACAGGGTTTGGAATGGCATGGACACCTTACGTGCTAGAGGA
AGCAACAGATGTGATGTGGCCAGGCAGCTTTCGCGTGAATCTACAACTTC
CAGAGCCACCCCCGGAGCCTCTCAAGCTTGACTTAAATCTCCGACTCTGA
TCCATCAGTCCTCTTACTGAGTTTGAAATTTTCTTTTTACGGTCTTTTCT
ATTGGGTGAGTTCTTAATTTATTAATACATCAAGTACAAAAACTAACAAA
GGCAGGAGCCCATAATTTCAACGAGGATGGGTGGTTCTGCCTAACAACTA
AAAAAAAAAAAAAAAAAAAAAAAAAAAA
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