CK936852

Overview
NameCK936852
Unique NameCK936852
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length735
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK936852_ssr77 microsatellite CK936852_ssr77:77..86. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CK936852 vs. ExPASy Swiss-Prot
Match: RGA4_SOLBU (Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.196e-18
Identity = 59/195 (30.26%), Postives = 102/195 (52.31%), Query Frame = 1
Query:  103 MVDAIISPLLELLTSMAVEEAKEQLRLVTGVGKESKKLTSNLQAIRAVLHDAEKRQVKEETVRLWLDRLRCACYDVEDVLGEWNTARLKLQIDGVDDHENDALVPKKKVGSFFPAASCFGCKPIFLRRRIALKMKDINETLDDIDKQKAMFGFAVNVTKSNERADQRGPASISSIDESEIFGRQKEKNELVNRLL 687
            M +A +  LLE LTS       ++L L+ G  KE +KL+S    I+AVL DA+++Q+K++ +  WL +L  A Y+V+D+LGE     ++ +              + ++G + P         I  R +I  +MK+I E LD I +++  F F   +T+    A  R    +  + E +++GR KE++E+V  L+
Sbjct:    1 MAEAFLQVLLENLTSFI----GDKLVLIFGFEKECEKLSSVFSTIQAVLQDAQEKQLKDKAIENWLQKLNSAAYEVDDILGECKNEAIRFE--------------QSRLGFYHPGI-------INFRHKIGRRMKEIMEKLDAISEERRKFHFLEKITERQAAAATRETGFV--LTEPKVYGRDKEEDEIVKILI 168          
BLAST of CK936852 vs. ExPASy Swiss-Prot
Match: RGA3_SOLBU (Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.513e-13
Identity = 58/197 (29.44%), Postives = 96/197 (48.73%), Query Frame = 1
Query:  103 MVDAIISPLLELLTSMAVEEAKEQLRLVTGVGKESKKLTSNLQAIRAVLHDAEKRQVKEETVRLWLDRLRCACYDVEDVLGEWNT--ARLKLQIDGVDDHENDALVPKKKVGSFFPAASCFGCKPIFLRRRIALKMKDINETLDDIDKQKAMFGFAVNVTKSNERADQRGPASISSIDESEIFGRQKEKNELVNRLL 687
            M +A +  LL+ LT     E    L LV G  KE KKL+S    I+AVL DA+++Q+K + ++ WL +L  A Y+V+D+L +  T  AR K  +                +G + P    F  K       +  +MK++ E LD I +++  F     + +      Q G      + E +++GR+KE++E+V  L+
Sbjct:    1 MAEAFLQVLLDNLTFFIQGE----LGLVFGFEKEFKKLSSMFSMIQAVLEDAQEKQLKYKAIKNWLQKLNVAAYEVDDILDDCKTEAARFKQAV----------------LGRYHPRTITFCYK-------VGKRMKEMMEKLDAIAEERRNFHLDERIIERQAARRQTG----FVLTEPKVYGREKEEDEIVKILI 166          
BLAST of CK936852 vs. ExPASy Swiss-Prot
Match: RGA1_SOLBU (Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 7.511e-13
Identity = 51/195 (26.15%), Postives = 95/195 (48.72%), Query Frame = 1
Query:  103 MVDAIISPLLELLTSMAVEEAKEQLRLVTGVGKESKKLTSNLQAIRAVLHDAEKRQVKEETVRLWLDRLRCACYDVEDVLGEWNTARLKLQIDGVDDHENDALVPKKKVGSFFPAASCFGCKPIFLRRRIALKMKDINETLDDIDKQKAMFGFAVNVTKSNERADQRGPASISSIDESEIFGRQKEKNELVNRLL 687
            M +A I  +L+ LTS      K +L L+ G   E ++L+S    I+AVL DA+++Q+ ++ +  WL +L  A Y+V+D+L E+ T   +                + + G + P       K I  R ++  +M  + + L+ I +++  F     + +      + G    S + E +++GR KEK+E+V  L+
Sbjct:    1 MAEAFIQVVLDNLTSFL----KGELVLLFGFQDEFQRLSSMFSTIQAVLEDAQEKQLNDKPLENWLQKLNAATYEVDDILDEYKTKATRFL--------------QSEYGRYHP-------KVIPFRHKVGKRMDQVMKKLNAIAEERKKFHLQEKIIERQAATRETG----SVLTEPQVYGRDKEKDEIVKILI 166          
BLAST of CK936852 vs. ExPASy Swiss-Prot
Match: RGA2_SOLBU (Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.673e-12
Identity = 52/195 (26.67%), Postives = 93/195 (47.69%), Query Frame = 1
Query:  103 MVDAIISPLLELLTSMAVEEAKEQLRLVTGVGKESKKLTSNLQAIRAVLHDAEKRQVKEETVRLWLDRLRCACYDVEDVLGEWNTARLKLQIDGVDDHENDALVPKKKVGSFFPAASCFGCKPIFLRRRIALKMKDINETLDDIDKQKAMFGFAVNVTKSNERADQRGPASISSIDESEIFGRQKEKNELVNRLL 687
            M +A I  LL+ LTS      K +L L+ G   E ++L+S    I+AVL DA+++Q+  + +  WL +L  A Y+V+D+L E+ T   +                + + G + P       K I  R ++  +M  + + L  I +++  F     + +      + G    S + E +++GR KEK+E+V  L+
Sbjct:    1 MAEAFIQVLLDNLTSFL----KGELVLLFGFQDEFQRLSSMFSTIQAVLEDAQEKQLNNKPLENWLQKLNAATYEVDDILDEYKTKATRFS--------------QSEYGRYHP-------KVIPFRHKVGKRMDQVMKKLKAIAEERKNFHLHEKIVERQAVRRETG----SVLTEPQVYGRDKEKDEIVKILI 166          
The following BLAST results are available for this feature:
BLAST of CK936852 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
RGA4_SOLBU1.196e-1830.26Putative disease resistance protein RGA4 OS=Solanu... [more]
RGA3_SOLBU1.513e-1329.44Putative disease resistance protein RGA3 OS=Solanu... [more]
RGA1_SOLBU7.511e-1326.15Putative disease resistance protein RGA1 OS=Solanu... [more]
RGA2_SOLBU1.673e-1226.67Disease resistance protein RGA2 OS=Solanum bulboca... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004517_C04 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IVF_C04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936852 ID=CK936852; Name=CK936852; organism=Citrus sinensis; type=EST; length=735bp
GGGGACCACATTATCAGCTCCTTCATTTCTTTCAGCATTAGCTACTTACT
TTTGCTACAACTCACCATCAATTTCTTCTCTCTCTCATTTTTCTTTTTCA
CCATGGTTGATGCGATCATTTCCCCTCTCTTGGAGCTGCTGACCTCAATG
GCTGTTGAAGAGGCGAAGGAACAATTGAGGCTTGTAACGGGTGTCGGAAA
GGAATCGAAGAAGCTGACCAGCAATCTCCAAGCCATTCGAGCTGTGCTCC
ATGATGCAGAGAAAAGGCAAGTAAAGGAGGAAACTGTCAGACTCTGGCTC
GATCGACTCAGATGCGCATGTTACGACGTGGAAGATGTGTTGGGTGAGTG
GAACACTGCAAGGCTCAAACTGCAGATCGATGGGGTGGATGATCATGAGA
ATGATGCTCTCGTTCCTAAGAAGAAGGTAGGTTCCTTCTTTCCTGCTGCC
TCTTGCTTTGGCTGCAAACCTATTTTTTTACGTCGTCGCATTGCTCTCAA
GATGAAAGACATCAATGAAACTCTTGATGATATTGACAAACAAAAAGCCA
TGTTTGGTTTTGCTGTGAATGTTACCAAGAGTAATGAGAGAGCGGATCAA
CGAGGGCCGGCAAGTATCTCCTCAATTGATGAGTCCGAGATATTTGGTAG
ACAAAAAGAGAAGAACGAACTCGTTAATAGGTTGTTATATGAGAGTAGTA
AGAGTAAGAAATCAGAAAAAGGATGTTTGGAAGCT
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