CK936847

Overview
NameCK936847
Unique NameCK936847
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length811
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK936847_ssr492 microsatellite CK936847_ssr492:492..503. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1973 contig Csv1_Contig1973:1..811. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK936847 vs. ExPASy Swiss-Prot
Match: SPT16_MAIZE (FACT complex subunit SPT16 OS=Zea mays GN=SPT16 PE=2 SV=1)

HSP 1 Score: 296.204 bits (757), Expect = 1.423e-79
Identity = 156/266 (58.65%), Postives = 194/266 (72.93%), Query Frame = 3
Query:    6 AVGSRYNSYCSNIARSFLIDATPLQSKVYEVLLKAHEAAIGALKPGNKVSAAYQAALSVVEREAPELVPNLTKSAGTGIGLEFRESGLNLNAKNDRVAKAKMIFNVSIGFQNLQNQTNEPKNQMFSLLLADTVIVGENNPEVVTCKSSKAVKDVAYSFNXXXXXXXRPKVKAEANGTEALPSKTTLRSDNQEISKEELRRQHQAELARQKNEETXXXXXXXXXXXXXXXXXXKTTTDLIAYKNVNDLLPPRDF**FRLTRKXXAVL 803
            A+GS+Y+SYCSN+AR++LIDATP Q+K YE L KAHEAAI  +KPGN++SA YQAA++V+ER+APEL+PNLTKSAGTGIGLEFRESGLNLNAKNDR  K  M+FNVS+G  N+Q +T   K + FSLLLADTV+V E   E++T   SKA KDVAYSFN         +VK ++   + +P+K TLRSDNQE+SKEELRRQHQAELARQKNEET                  + + +L+AYKNVND+   RD    ++ +K  AVL
Sbjct:  290 AIGSKYSSYCSNVARTYLIDATPTQNKAYETLRKAHEAAIQQVKPGNQMSAVYQAAVAVIERDAPELLPNLTKSAGTGIGLEFRESGLNLNAKNDRRIKKGMVFNVSLGLHNIQAETTSEKTKQFSLLLADTVLVNERGHEILTAPCSKAFKDVAYSFN-EDDDAVAAEVKIKSKTIDVMPTKATLRSDNQEMSKEELRRQHQAELARQKNEETARRLAGVGTGSGDGRGPARASNELVAYKNVNDVPFVRDL-VIQVDQKNEAVL 553          
BLAST of CK936847 vs. ExPASy Swiss-Prot
Match: SPT16_ARATH (FACT complex subunit SPT16 OS=Arabidopsis thaliana GN=SPT16 PE=1 SV=1)

HSP 1 Score: 290.041 bits (741), Expect = 1.020e-77
Identity = 154/248 (62.10%), Postives = 188/248 (75.81%), Query Frame = 3
Query:    6 AVGSRYNSYCSNIARSFLIDATPLQSKVYEVLLKAHEAAIGALKPGNKVSAAYQAALSVVEREAPELVPNLTKSAGTGIGLEFRESGLNLNAKNDRVAKAKMIFNVSIGFQNLQNQT-NEPKNQMFSLLLADTVIVGENNPEVVTCKSSKAVKDVAYSFNXXXXXXXRPKVKAEANGTEALPSKTTLRSDNQEISKEELRRQHQAELARQKNEETXXXXXXXXXXXXXXXXXXKTTTDLIAYKNVNDL 746
            AVG+RYNSYCSN+AR++LIDAT LQSK YEVLLKAHEAAI AL+ G K++  YQAALSVVE+ APE V  LTKSAGTGIGLEFRESGLN+NAKND+V + KM FNVS+GFQNL+ ++ +  KN+ FSLLLADTV+V +  PE++T K SK+VKDVAYSF        +P+ KA  +G+E   +KT LRSD+  +SKEELR+QHQAELARQKNEET                  KT+ D++AYKNVND+
Sbjct:  303 AVGARYNSYCSNVARTYLIDATSLQSKAYEVLLKAHEAAIDALRSGRKINTVYQAALSVVEKNAPEFVDKLTKSAGTGIGLEFRESGLNINAKNDKVLRPKMAFNVSLGFQNLECESESRSKNKKFSLLLADTVLVTDQKPELLT-KCSKSVKDVAYSFK-EDEEEEKPRKKARTSGSENYITKTALRSDDHVVSKEELRKQHQAELARQKNEETARRLAGDSSGAGDSRSTAKTSADVVAYKNVNDM 548          
BLAST of CK936847 vs. ExPASy Swiss-Prot
Match: SPT16_ORYSJ (FACT complex subunit SPT16 OS=Oryza sativa subsp. japonica GN=SPT16 PE=2 SV=2)

HSP 1 Score: 283.878 bits (725), Expect = 7.307e-76
Identity = 156/267 (58.43%), Postives = 189/267 (70.79%), Query Frame = 3
Query:    6 AVGSRYNSYCSNIARSFLIDATPLQSKVYEVLLKAHEAAIGALKPGNKVSAAYQAALSVVEREAPELVPNLTKSAGTGIGLEFRESGLNLNAKNDRVAKAKMIFNVSIGFQNLQNQTNEPKNQMFSLLLADTVIVGENNPEVVTCKSSKAVKDVAYSFNXXXXXXXRPKVKAEANGTEAL-PSKTTLRSDNQEISKEELRRQHQAELARQKNEETXXXXXXXXXXXXXXXXXXKTTTDLIAYKNVNDLLPPRDF**FRLTRKXXAVL 803
            A+G+RY +YCSN+AR+FLIDATP Q K YE L+KAHEAA+ ALKPGN++SA YQAA+ V+E+ APEL+ NLTKSAGTGIGLEFRESGLNLN KNDR+ KA M+FNVS+G  NLQ +    K + +SLLLADT +V   N   +T   SK VKDVAYSFN        P  K E N  EAL P+K TLRSDNQE+SKEELRRQHQAELARQKNEET                  +++ +L+AYKNVND+   R+    ++ +K  AVL
Sbjct:  293 AIGARYGNYCSNMARTFLIDATPTQIKAYETLMKAHEAALEALKPGNRMSAVYQAAVDVIEKNAPELLRNLTKSAGTGIGLEFRESGLNLNPKNDRIIKAGMVFNVSLGLHNLQAEKKSEKTKQYSLLLADTCLVPLEN---LTASCSKLVKDVAYSFNDEDEVL--PVKKVEVNAKEALPPTKATLRSDNQEMSKEELRRQHQAELARQKNEETARRLAGVGSGSGDGRGPSRSSNELVAYKNVNDVPYAREL-VIQVDQKNEAVL 553          
BLAST of CK936847 vs. ExPASy Swiss-Prot
Match: SPT16_DROME (FACT complex subunit spt16 OS=Drosophila melanogaster GN=dre4 PE=1 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 4.958e-32
Identity = 80/219 (36.53%), Postives = 119/219 (54.34%), Query Frame = 3
Query:    6 AVGSRYNSYCSNIARSFLIDATPLQSKVYEVLLKAHEAAIGALKPGNKVSAAYQAALSVVEREAPELVPNLTKSAGTGIGLEFRESGLNLNAKNDRVAKAKMIFNVSIGFQNLQN-QTNEPKNQMFSLLLADTVIVGENNPEVVTCKSSKAVKDVAYSF--NXXXXXXXRPKVKAEANGTEAL---PSKTTLRSD-NQEISKEELRRQHQAELARQKNE 641
            ++G+RY SYCSNI+R+FL++ T    + Y  L+   E  +  L PG K+   Y+  L  V++E P +V NL KS G  +GLEFRE+ + +  K   + K  M+FN+ +G  NL N +  + + + ++L + DTV+VGE +P  V   S K +K+V      +         K   E  GTE L        L S    EI+ EE R++HQ ELA+Q NE
Sbjct:  275 SLGARYKSYCSNISRTFLVNPTEAMQENYTFLVSVQEEILKLLVPGTKLCDVYEKTLDFVKKEKPSMVDNLPKSFGFAMGLEFRENSIVIGPKCQALLKKNMVFNLHVGISNLTNPEATDKEGKNYALFIGDTVLVGEQSPASVMTPSKKKIKNVGIFIKDDSDEEDVDDKKTAKEDQGTEILGRSKRNAVLESKLRNEINTEEKRKEHQRELAQQLNE 493          
BLAST of CK936847 vs. ExPASy Swiss-Prot
Match: SP16H_MOUSE (FACT complex subunit SPT16 OS=Mus musculus GN=Supt16h PE=1 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 1.105e-31
Identity = 76/216 (35.19%), Postives = 122/216 (56.48%), Query Frame = 3
Query:    6 AVGSRYNSYCSNIARSFLIDATPLQSKVYEVLLKAHEAAIGALKPGNKVSAAYQAALSVVEREAPELVPNLTKSAGTGIGLEFRESGLNLNAKNDRVAKAKMIFNVSIGFQNLQN-QTNEPKNQMFSLLLADTVIVGENNPEVVTCKSSKAVKDVAYSFNXXXXXXXRPKVKAEANGTEALPSKTTLRSD--NQEISKEELRRQHQAELARQKNEE 644
            A+G R+ SYCSN+ R+ ++D T    + Y  LL+  E  +  L+ G K+   Y + + VV+++ PEL+  +TK+ G G+G+EFRE  L +N+KN    K  M+F++++GF +L N +  +P+ + ++L + DTV+V E+ P  +     K VK+V   F          + K EA       S+  L ++    E++ EE RR HQ ELA Q NEE
Sbjct:  274 AMGIRFKSYCSNLVRTLMVDPTQEVQENYNFLLQLQEELLKELRHGVKICDVYNSVMDVVKKQKPELLNKITKNLGFGMGIEFREGSLVINSKNQYKLKKGMVFSINLGFSDLTNKEGKKPEEKTYALFIGDTVLVDEDGPATILTSVKKKVKNVGI-FLKNEDDEEEEEEKDEAEDLLGRGSRAALLTERTRNEMTAEEKRRAHQKELAAQLNEE 488          
BLAST of CK936847 vs. ExPASy Swiss-Prot
Match: SP16H_HUMAN (FACT complex subunit SPT16 OS=Homo sapiens GN=SUPT16H PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.105e-31
Identity = 77/216 (35.65%), Postives = 122/216 (56.48%), Query Frame = 3
Query:    6 AVGSRYNSYCSNIARSFLIDATPLQSKVYEVLLKAHEAAIGALKPGNKVSAAYQAALSVVEREAPELVPNLTKSAGTGIGLEFRESGLNLNAKNDRVAKAKMIFNVSIGFQNLQN-QTNEPKNQMFSLLLADTVIVGENNPEVVTCKSSKAVKDVAYSFNXXXXXXXRPKVKAEANGTEALPSKTTLRSD--NQEISKEELRRQHQAELARQKNEE 644
            A+G R+ SYCSN+ R+ ++D +    + Y  LL+  E  +  L+ G K+   Y A + VV+++ PEL+  +TK+ G G+G+EFRE  L +N+KN    K  M+F++++GF +L N +  +P+ + ++L + DTV+V E+ P  V     K VK+V   F          + K EA       S+  L ++    E++ EE RR HQ ELA Q NEE
Sbjct:  274 AMGIRFKSYCSNLVRTLMVDPSQEVQENYNFLLQLQEELLKELRHGVKICDVYNAVMDVVKKQKPELLNKITKNLGFGMGIEFREGSLVINSKNQYKLKKGMVFSINLGFSDLTNKEGKKPEEKTYALFIGDTVLVDEDGPATVLTSVKKKVKNVGI-FLKNEDEEEEEEEKDEAEDLLGRGSRAALLTERTRNEMTAEEKRRAHQKELAAQLNEE 488          
BLAST of CK936847 vs. ExPASy Swiss-Prot
Match: SPT16_DICDI (FACT complex subunit SPT16 OS=Dictyostelium discoideum GN=spt16 PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.008e-29
Identity = 79/214 (36.92%), Postives = 113/214 (52.80%), Query Frame = 3
Query:   12 GSRYNSYCSNIARSFLIDATPLQSKVYEVLLKAHEAAIGALKPGNKVSAAYQAALSVV-EREAPELVPNLTKSAGTGIGLEFRESGLNLNAKNDRVAKAKMIFNVSIGFQNLQN-QTNEPKNQMFSLLLADTVIVGENNPEVVTCKSSKAVKDVAYSFNXXXXXXXR---PKVKAEANGTEALPSKTTLRSDNQEISKEELRRQHQAELARQKN 638
            G+RY +YCSNIAR+++ID T  Q K Y +LL      I A+KP    S+ Y+ A+  + E   PELV +  K+ G GIG+EF+ES   LNA N R  KA M  N++ GFQ + N +  + K++ +SLL++DTV++ +     V     K   DV Y              P VK E        +  T+ +  +  S EE RR HQ ++  QKN
Sbjct:  297 GARYKNYCSNIARTYIIDPTSDQKKNYAILLNVQSNVIKAIKPDVTFSSLYEKAIQTIKESSKPELVDHFPKNVGYGIGIEFQESLAVLNATNSRTLKAGMTLNIACGFQKISNPEGKDEKSKTYSLLISDTVLLNDEGKVEVLTDVGKKASDVVYMLGGEDDDDDNDNDPSVKLELPDDVKGITGRTIETKEKSKSVEERRRDHQ-KMLEQKN 509          
BLAST of CK936847 vs. ExPASy Swiss-Prot
Match: SP16H_XENLA (FACT complex subunit SPT16 OS=Xenopus laevis GN=supt16h PE=1 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 1.143e-28
Identity = 75/217 (34.56%), Postives = 113/217 (52.07%), Query Frame = 3
Query:    6 AVGSRYNSYCSNIARSFLIDATPLQSKVYEVLLKAHEAAIGALKPGNKVSAAYQAALSVVEREAPELVPNLTKSAGTGIGLEFRESGLNLNAKNDRVAKAKMIFNVSIGFQNLQNQT-NEPKNQMFSLLLADTVIVGENNPEVVTCKSSKAVKDVAYSFNXXXXXXXRPKVKAEAN---GTEALPSKTTLRSDNQEISKEELRRQHQAELARQKNEE 644
            A+G RY SYCSN+ R+ ++D T    + Y  LL+  E  +  LK G K+  AYQ  +  V+++ P+L+  +TK+ G  +G+EFRE  L +N KN    K  M+F+V +G   L N+   +P+ + ++L + DTV+V E     V     K VK+V   F          + K EA    G  +  +         E++ EE RR HQ ELA Q N+E
Sbjct:  275 ALGIRYKSYCSNLVRTLMVDPTQEMQENYNFLLQLQEELLKELKHGAKICDAYQVIMDQVKKQKPDLMSKITKTLGFAMGIEFREGSLVINNKNQYKLKKGMVFSVHLGLAELNNKMGKKPEEKTYALFVGDTVLVNEEGAATVLTNVKKKVKNVGI-FLKKEDEEEEEEEKDEAEDLLGRGSRAAALLTERTRNEMTAEEKRRTHQKELATQLNDE 490          
BLAST of CK936847 vs. ExPASy Swiss-Prot
Match: SPT16_SCHPO (FACT complex subunit spt16 OS=Schizosaccharomyces pombe GN=spt16 PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.950e-28
Identity = 82/222 (36.94%), Postives = 121/222 (54.50%), Query Frame = 3
Query:    6 AVGSRYNSYCSNIARSFLIDATPLQSKVYEVLLKAHEAAIGALKPGNKVSAAYQAALSVVEREAPELVPNLTKSAGTGIGLEFRESGLNLNAKNDRVAKAKMIFNVSIGFQNLQNQTNEPKNQM---FSLLLADTVIVGENNPEVVTCKSSKAVKDVAYSF---NXXXXXXXRPKVKAEANGTEALPS-KTTLRSDNQEI--SKEELRRQHQAELARQKNEE 644
            ++G RY SYCSN+ R++L D    Q K Y  L+   +      + G  +   Y   L ++  + P+L PN  ++ G GIG+EFRES L +NAKN RV +A M  N+SIGF NL N    PKN     ++LLL DT+ +  ++P V T  S KA  D++Y F   +       +P+ K    GT  + S K   RS+ +++  S E+ R +HQ +LA +K  E
Sbjct:  282 SLGFRYKSYCSNVGRTYLFDPDSEQQKNYSFLVALQKKLFEYCRDGAVIGDIYTKILGLIRAKRPDLEPNFVRNLGAGIGIEFRESSLLVNAKNPRVLQAGMTLNLSIGFGNLINP--HPKNSQSKEYALLLIDTIQITRSDPIVFT-DSPKAQGDISYFFGEDDSSLEDGVKPR-KPPTRGTATISSHKGKTRSETRDLDDSAEKRRVEHQKQLASRKQAE 499          
BLAST of CK936847 vs. ExPASy Swiss-Prot
Match: SPT16_GIBZE (FACT complex subunit SPT16 OS=Gibberella zeae GN=SPT16 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.264e-27
Identity = 74/224 (33.04%), Postives = 121/224 (54.02%), Query Frame = 3
Query:    6 AVGSRYNSYCSNIARSFLIDATPLQSKVYEVLLKAHEAAIGALKPGNKVSAAYQAALSVVEREAPELVPNLTKSAGTGIGLEFRESGLNLNAKNDRVAKAKMIFNVSIGFQNLQNQTNEPKN-QMFSLLLADTVIVGENNPEVVTCKSSKAVKDVAYSFNXXXXXXXRPKVKAEANGTEALPSK----TTLRSD------NQEISKEELRRQHQAELARQKNEE 644
            A+G RY SYCS IAR++L+D    Q   Y++L   H   I  ++ G      Y  A+ +++ + PE+  +  K+ G G+GLE ++  L LNAKN RV K  M   ++ GFQ+++N   + KN ++++L+L DT+ V  + P V T ++  +    ++ F         PK + + +   A+ +K    T LRS+      N +I K+  RR+HQ ELA +K  E
Sbjct:  286 AMGLRYKSYCSTIARTYLVDPNKAQESSYKLLTLIHNTIIKEIRDGMTAKEVYGRAVGIIKSKKPEMEKHFLKNVGWGVGLENKDPTLVLNAKNQRVLKDGMTLIINTGFQDIENPHPQDKNSKVYALVLTDTIRVTSSEPVVFTAEAPTSADANSFFFKDDEETEPAPKKEKKDSRVGAVATKNITTTRLRSERTTQVANDDIEKK--RREHQKELAAKKQRE 507          
The following BLAST results are available for this feature:
BLAST of CK936847 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
SPT16_MAIZE1.423e-7958.65FACT complex subunit SPT16 OS=Zea mays GN=SPT16 PE... [more]
SPT16_ARATH1.020e-7762.10FACT complex subunit SPT16 OS=Arabidopsis thaliana... [more]
SPT16_ORYSJ7.307e-7658.43FACT complex subunit SPT16 OS=Oryza sativa subsp. ... [more]
SPT16_DROME4.958e-3236.53FACT complex subunit spt16 OS=Drosophila melanogas... [more]
SP16H_MOUSE1.105e-3135.19FACT complex subunit SPT16 OS=Mus musculus GN=Supt... [more]
SP16H_HUMAN1.105e-3135.65FACT complex subunit SPT16 OS=Homo sapiens GN=SUPT... [more]
SPT16_DICDI3.008e-2936.92FACT complex subunit SPT16 OS=Dictyostelium discoi... [more]
SP16H_XENLA1.143e-2834.56FACT complex subunit SPT16 OS=Xenopus laevis GN=su... [more]
SPT16_SCHPO1.950e-2836.94FACT complex subunit spt16 OS=Schizosaccharomyces ... [more]
SPT16_GIBZE1.264e-2733.04FACT complex subunit SPT16 OS=Gibberella zeae GN=S... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004517_D06 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IVF_D06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936847 ID=CK936847; Name=CK936847; organism=Citrus sinensis; type=EST; length=811bp
GGGGTGCAGTTGGGTCACGGTATAACAGTTACTGCTCGAACATTGCCAGG
TCATTCTTGATTGATGCCACTCCCTTGCAGAGCAAGGTGTACGAGGTTCT
TCTGAAAGCTCATGAAGCAGCTATTGGTGCTCTGAAGCCTGGGAACAAGG
TTAGTGCTGCTTACCAGGCTGCCCTTTCAGTGGTTGAGAGGGAGGCACCT
GAGTTGGTTCCGAATTTAACAAAATCTGCCGGCACAGGTATCGGCCTTGA
GTTTCGTGAGTCTGGTCTAAATCTGAATGCCAAGAATGATCGAGTGGCGA
AAGCAAAAATGATTTTTAATGTGTCAATTGGTTTCCAGAACTTGCAGAAC
CAGACCAATGAGCCAAAGAATCAGATGTTTTCTCTGTTACTTGCTGACAC
AGTTATTGTTGGTGAAAATAATCCGGAGGTGGTGACTTGCAAGAGCTCGA
AAGCTGTTAAGGATGTTGCTTACTCATTTAATGAGGATGAGGAAGAAGAA
GAAAGGCCTAAAGTGAAAGCTGAGGCTAATGGCACAGAAGCCTTGCCATC
TAAAACAACACTCAGATCTGATAATCAGGAGATTTCGAAAGAGGAGCTTC
GGAGGCAGCATCAGGCAGAACTTGCTCGTCAGAAGAATGAAGAAACTGGT
AGGAGACTTGCTGGTGGGGGAAGCGGGGCTGGAGATAATCGTGCTTCTGC
TAAAACAACGACTGATTTGATTGCCTATAAGAACGTTAATGATCTTCTTC
CTCCAAGAGATTTTTGATGATTCAGATTGACCAGAAAAATNNNGGCAGTA
CTCTTTCNNAT
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