CK936847
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK936847 vs. ExPASy Swiss-Prot
Match: SPT16_MAIZE (FACT complex subunit SPT16 OS=Zea mays GN=SPT16 PE=2 SV=1) HSP 1 Score: 296.204 bits (757), Expect = 1.423e-79 Identity = 156/266 (58.65%), Postives = 194/266 (72.93%), Query Frame = 3 Query: 6 AVGSRYNSYCSNIARSFLIDATPLQSKVYEVLLKAHEAAIGALKPGNKVSAAYQAALSVVEREAPELVPNLTKSAGTGIGLEFRESGLNLNAKNDRVAKAKMIFNVSIGFQNLQNQTNEPKNQMFSLLLADTVIVGENNPEVVTCKSSKAVKDVAYSFNXXXXXXXRPKVKAEANGTEALPSKTTLRSDNQEISKEELRRQHQAELARQKNEETXXXXXXXXXXXXXXXXXXKTTTDLIAYKNVNDLLPPRDF**FRLTRKXXAVL 803 A+GS+Y+SYCSN+AR++LIDATP Q+K YE L KAHEAAI +KPGN++SA YQAA++V+ER+APEL+PNLTKSAGTGIGLEFRESGLNLNAKNDR K M+FNVS+G N+Q +T K + FSLLLADTV+V E E++T SKA KDVAYSFN +VK ++ + +P+K TLRSDNQE+SKEELRRQHQAELARQKNEET + + +L+AYKNVND+ RD ++ +K AVL Sbjct: 290 AIGSKYSSYCSNVARTYLIDATPTQNKAYETLRKAHEAAIQQVKPGNQMSAVYQAAVAVIERDAPELLPNLTKSAGTGIGLEFRESGLNLNAKNDRRIKKGMVFNVSLGLHNIQAETTSEKTKQFSLLLADTVLVNERGHEILTAPCSKAFKDVAYSFN-EDDDAVAAEVKIKSKTIDVMPTKATLRSDNQEMSKEELRRQHQAELARQKNEETARRLAGVGTGSGDGRGPARASNELVAYKNVNDVPFVRDL-VIQVDQKNEAVL 553
BLAST of CK936847 vs. ExPASy Swiss-Prot
Match: SPT16_ARATH (FACT complex subunit SPT16 OS=Arabidopsis thaliana GN=SPT16 PE=1 SV=1) HSP 1 Score: 290.041 bits (741), Expect = 1.020e-77 Identity = 154/248 (62.10%), Postives = 188/248 (75.81%), Query Frame = 3 Query: 6 AVGSRYNSYCSNIARSFLIDATPLQSKVYEVLLKAHEAAIGALKPGNKVSAAYQAALSVVEREAPELVPNLTKSAGTGIGLEFRESGLNLNAKNDRVAKAKMIFNVSIGFQNLQNQT-NEPKNQMFSLLLADTVIVGENNPEVVTCKSSKAVKDVAYSFNXXXXXXXRPKVKAEANGTEALPSKTTLRSDNQEISKEELRRQHQAELARQKNEETXXXXXXXXXXXXXXXXXXKTTTDLIAYKNVNDL 746 AVG+RYNSYCSN+AR++LIDAT LQSK YEVLLKAHEAAI AL+ G K++ YQAALSVVE+ APE V LTKSAGTGIGLEFRESGLN+NAKND+V + KM FNVS+GFQNL+ ++ + KN+ FSLLLADTV+V + PE++T K SK+VKDVAYSF +P+ KA +G+E +KT LRSD+ +SKEELR+QHQAELARQKNEET KT+ D++AYKNVND+ Sbjct: 303 AVGARYNSYCSNVARTYLIDATSLQSKAYEVLLKAHEAAIDALRSGRKINTVYQAALSVVEKNAPEFVDKLTKSAGTGIGLEFRESGLNINAKNDKVLRPKMAFNVSLGFQNLECESESRSKNKKFSLLLADTVLVTDQKPELLT-KCSKSVKDVAYSFK-EDEEEEKPRKKARTSGSENYITKTALRSDDHVVSKEELRKQHQAELARQKNEETARRLAGDSSGAGDSRSTAKTSADVVAYKNVNDM 548
BLAST of CK936847 vs. ExPASy Swiss-Prot
Match: SPT16_ORYSJ (FACT complex subunit SPT16 OS=Oryza sativa subsp. japonica GN=SPT16 PE=2 SV=2) HSP 1 Score: 283.878 bits (725), Expect = 7.307e-76 Identity = 156/267 (58.43%), Postives = 189/267 (70.79%), Query Frame = 3 Query: 6 AVGSRYNSYCSNIARSFLIDATPLQSKVYEVLLKAHEAAIGALKPGNKVSAAYQAALSVVEREAPELVPNLTKSAGTGIGLEFRESGLNLNAKNDRVAKAKMIFNVSIGFQNLQNQTNEPKNQMFSLLLADTVIVGENNPEVVTCKSSKAVKDVAYSFNXXXXXXXRPKVKAEANGTEAL-PSKTTLRSDNQEISKEELRRQHQAELARQKNEETXXXXXXXXXXXXXXXXXXKTTTDLIAYKNVNDLLPPRDF**FRLTRKXXAVL 803 A+G+RY +YCSN+AR+FLIDATP Q K YE L+KAHEAA+ ALKPGN++SA YQAA+ V+E+ APEL+ NLTKSAGTGIGLEFRESGLNLN KNDR+ KA M+FNVS+G NLQ + K + +SLLLADT +V N +T SK VKDVAYSFN P K E N EAL P+K TLRSDNQE+SKEELRRQHQAELARQKNEET +++ +L+AYKNVND+ R+ ++ +K AVL Sbjct: 293 AIGARYGNYCSNMARTFLIDATPTQIKAYETLMKAHEAALEALKPGNRMSAVYQAAVDVIEKNAPELLRNLTKSAGTGIGLEFRESGLNLNPKNDRIIKAGMVFNVSLGLHNLQAEKKSEKTKQYSLLLADTCLVPLEN---LTASCSKLVKDVAYSFNDEDEVL--PVKKVEVNAKEALPPTKATLRSDNQEMSKEELRRQHQAELARQKNEETARRLAGVGSGSGDGRGPSRSSNELVAYKNVNDVPYAREL-VIQVDQKNEAVL 553
BLAST of CK936847 vs. ExPASy Swiss-Prot
Match: SPT16_DROME (FACT complex subunit spt16 OS=Drosophila melanogaster GN=dre4 PE=1 SV=2) HSP 1 Score: 138.272 bits (347), Expect = 4.958e-32 Identity = 80/219 (36.53%), Postives = 119/219 (54.34%), Query Frame = 3 Query: 6 AVGSRYNSYCSNIARSFLIDATPLQSKVYEVLLKAHEAAIGALKPGNKVSAAYQAALSVVEREAPELVPNLTKSAGTGIGLEFRESGLNLNAKNDRVAKAKMIFNVSIGFQNLQN-QTNEPKNQMFSLLLADTVIVGENNPEVVTCKSSKAVKDVAYSF--NXXXXXXXRPKVKAEANGTEAL---PSKTTLRSD-NQEISKEELRRQHQAELARQKNE 641 ++G+RY SYCSNI+R+FL++ T + Y L+ E + L PG K+ Y+ L V++E P +V NL KS G +GLEFRE+ + + K + K M+FN+ +G NL N + + + + ++L + DTV+VGE +P V S K +K+V + K E GTE L L S EI+ EE R++HQ ELA+Q NE Sbjct: 275 SLGARYKSYCSNISRTFLVNPTEAMQENYTFLVSVQEEILKLLVPGTKLCDVYEKTLDFVKKEKPSMVDNLPKSFGFAMGLEFRENSIVIGPKCQALLKKNMVFNLHVGISNLTNPEATDKEGKNYALFIGDTVLVGEQSPASVMTPSKKKIKNVGIFIKDDSDEEDVDDKKTAKEDQGTEILGRSKRNAVLESKLRNEINTEEKRKEHQRELAQQLNE 493
BLAST of CK936847 vs. ExPASy Swiss-Prot
Match: SP16H_MOUSE (FACT complex subunit SPT16 OS=Mus musculus GN=Supt16h PE=1 SV=2) HSP 1 Score: 137.117 bits (344), Expect = 1.105e-31 Identity = 76/216 (35.19%), Postives = 122/216 (56.48%), Query Frame = 3 Query: 6 AVGSRYNSYCSNIARSFLIDATPLQSKVYEVLLKAHEAAIGALKPGNKVSAAYQAALSVVEREAPELVPNLTKSAGTGIGLEFRESGLNLNAKNDRVAKAKMIFNVSIGFQNLQN-QTNEPKNQMFSLLLADTVIVGENNPEVVTCKSSKAVKDVAYSFNXXXXXXXRPKVKAEANGTEALPSKTTLRSD--NQEISKEELRRQHQAELARQKNEE 644 A+G R+ SYCSN+ R+ ++D T + Y LL+ E + L+ G K+ Y + + VV+++ PEL+ +TK+ G G+G+EFRE L +N+KN K M+F++++GF +L N + +P+ + ++L + DTV+V E+ P + K VK+V F + K EA S+ L ++ E++ EE RR HQ ELA Q NEE Sbjct: 274 AMGIRFKSYCSNLVRTLMVDPTQEVQENYNFLLQLQEELLKELRHGVKICDVYNSVMDVVKKQKPELLNKITKNLGFGMGIEFREGSLVINSKNQYKLKKGMVFSINLGFSDLTNKEGKKPEEKTYALFIGDTVLVDEDGPATILTSVKKKVKNVGI-FLKNEDDEEEEEEKDEAEDLLGRGSRAALLTERTRNEMTAEEKRRAHQKELAAQLNEE 488
BLAST of CK936847 vs. ExPASy Swiss-Prot
Match: SP16H_HUMAN (FACT complex subunit SPT16 OS=Homo sapiens GN=SUPT16H PE=1 SV=1) HSP 1 Score: 137.117 bits (344), Expect = 1.105e-31 Identity = 77/216 (35.65%), Postives = 122/216 (56.48%), Query Frame = 3 Query: 6 AVGSRYNSYCSNIARSFLIDATPLQSKVYEVLLKAHEAAIGALKPGNKVSAAYQAALSVVEREAPELVPNLTKSAGTGIGLEFRESGLNLNAKNDRVAKAKMIFNVSIGFQNLQN-QTNEPKNQMFSLLLADTVIVGENNPEVVTCKSSKAVKDVAYSFNXXXXXXXRPKVKAEANGTEALPSKTTLRSD--NQEISKEELRRQHQAELARQKNEE 644 A+G R+ SYCSN+ R+ ++D + + Y LL+ E + L+ G K+ Y A + VV+++ PEL+ +TK+ G G+G+EFRE L +N+KN K M+F++++GF +L N + +P+ + ++L + DTV+V E+ P V K VK+V F + K EA S+ L ++ E++ EE RR HQ ELA Q NEE Sbjct: 274 AMGIRFKSYCSNLVRTLMVDPSQEVQENYNFLLQLQEELLKELRHGVKICDVYNAVMDVVKKQKPELLNKITKNLGFGMGIEFREGSLVINSKNQYKLKKGMVFSINLGFSDLTNKEGKKPEEKTYALFIGDTVLVDEDGPATVLTSVKKKVKNVGI-FLKNEDEEEEEEEKDEAEDLLGRGSRAALLTERTRNEMTAEEKRRAHQKELAAQLNEE 488
BLAST of CK936847 vs. ExPASy Swiss-Prot
Match: SPT16_DICDI (FACT complex subunit SPT16 OS=Dictyostelium discoideum GN=spt16 PE=3 SV=1) HSP 1 Score: 129.028 bits (323), Expect = 3.008e-29 Identity = 79/214 (36.92%), Postives = 113/214 (52.80%), Query Frame = 3 Query: 12 GSRYNSYCSNIARSFLIDATPLQSKVYEVLLKAHEAAIGALKPGNKVSAAYQAALSVV-EREAPELVPNLTKSAGTGIGLEFRESGLNLNAKNDRVAKAKMIFNVSIGFQNLQN-QTNEPKNQMFSLLLADTVIVGENNPEVVTCKSSKAVKDVAYSFNXXXXXXXR---PKVKAEANGTEALPSKTTLRSDNQEISKEELRRQHQAELARQKN 638 G+RY +YCSNIAR+++ID T Q K Y +LL I A+KP S+ Y+ A+ + E PELV + K+ G GIG+EF+ES LNA N R KA M N++ GFQ + N + + K++ +SLL++DTV++ + V K DV Y P VK E + T+ + + S EE RR HQ ++ QKN Sbjct: 297 GARYKNYCSNIARTYIIDPTSDQKKNYAILLNVQSNVIKAIKPDVTFSSLYEKAIQTIKESSKPELVDHFPKNVGYGIGIEFQESLAVLNATNSRTLKAGMTLNIACGFQKISNPEGKDEKSKTYSLLISDTVLLNDEGKVEVLTDVGKKASDVVYMLGGEDDDDDNDNDPSVKLELPDDVKGITGRTIETKEKSKSVEERRRDHQ-KMLEQKN 509
BLAST of CK936847 vs. ExPASy Swiss-Prot
Match: SP16H_XENLA (FACT complex subunit SPT16 OS=Xenopus laevis GN=supt16h PE=1 SV=2) HSP 1 Score: 127.102 bits (318), Expect = 1.143e-28 Identity = 75/217 (34.56%), Postives = 113/217 (52.07%), Query Frame = 3 Query: 6 AVGSRYNSYCSNIARSFLIDATPLQSKVYEVLLKAHEAAIGALKPGNKVSAAYQAALSVVEREAPELVPNLTKSAGTGIGLEFRESGLNLNAKNDRVAKAKMIFNVSIGFQNLQNQT-NEPKNQMFSLLLADTVIVGENNPEVVTCKSSKAVKDVAYSFNXXXXXXXRPKVKAEAN---GTEALPSKTTLRSDNQEISKEELRRQHQAELARQKNEE 644 A+G RY SYCSN+ R+ ++D T + Y LL+ E + LK G K+ AYQ + V+++ P+L+ +TK+ G +G+EFRE L +N KN K M+F+V +G L N+ +P+ + ++L + DTV+V E V K VK+V F + K EA G + + E++ EE RR HQ ELA Q N+E Sbjct: 275 ALGIRYKSYCSNLVRTLMVDPTQEMQENYNFLLQLQEELLKELKHGAKICDAYQVIMDQVKKQKPDLMSKITKTLGFAMGIEFREGSLVINNKNQYKLKKGMVFSVHLGLAELNNKMGKKPEEKTYALFVGDTVLVNEEGAATVLTNVKKKVKNVGI-FLKKEDEEEEEEEKDEAEDLLGRGSRAAALLTERTRNEMTAEEKRRTHQKELATQLNDE 490
BLAST of CK936847 vs. ExPASy Swiss-Prot
Match: SPT16_SCHPO (FACT complex subunit spt16 OS=Schizosaccharomyces pombe GN=spt16 PE=1 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 1.950e-28 Identity = 82/222 (36.94%), Postives = 121/222 (54.50%), Query Frame = 3 Query: 6 AVGSRYNSYCSNIARSFLIDATPLQSKVYEVLLKAHEAAIGALKPGNKVSAAYQAALSVVEREAPELVPNLTKSAGTGIGLEFRESGLNLNAKNDRVAKAKMIFNVSIGFQNLQNQTNEPKNQM---FSLLLADTVIVGENNPEVVTCKSSKAVKDVAYSF---NXXXXXXXRPKVKAEANGTEALPS-KTTLRSDNQEI--SKEELRRQHQAELARQKNEE 644 ++G RY SYCSN+ R++L D Q K Y L+ + + G + Y L ++ + P+L PN ++ G GIG+EFRES L +NAKN RV +A M N+SIGF NL N PKN ++LLL DT+ + ++P V T S KA D++Y F + +P+ K GT + S K RS+ +++ S E+ R +HQ +LA +K E Sbjct: 282 SLGFRYKSYCSNVGRTYLFDPDSEQQKNYSFLVALQKKLFEYCRDGAVIGDIYTKILGLIRAKRPDLEPNFVRNLGAGIGIEFRESSLLVNAKNPRVLQAGMTLNLSIGFGNLINP--HPKNSQSKEYALLLIDTIQITRSDPIVFT-DSPKAQGDISYFFGEDDSSLEDGVKPR-KPPTRGTATISSHKGKTRSETRDLDDSAEKRRVEHQKQLASRKQAE 499
BLAST of CK936847 vs. ExPASy Swiss-Prot
Match: SPT16_GIBZE (FACT complex subunit SPT16 OS=Gibberella zeae GN=SPT16 PE=3 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 1.264e-27 Identity = 74/224 (33.04%), Postives = 121/224 (54.02%), Query Frame = 3 Query: 6 AVGSRYNSYCSNIARSFLIDATPLQSKVYEVLLKAHEAAIGALKPGNKVSAAYQAALSVVEREAPELVPNLTKSAGTGIGLEFRESGLNLNAKNDRVAKAKMIFNVSIGFQNLQNQTNEPKN-QMFSLLLADTVIVGENNPEVVTCKSSKAVKDVAYSFNXXXXXXXRPKVKAEANGTEALPSK----TTLRSD------NQEISKEELRRQHQAELARQKNEE 644 A+G RY SYCS IAR++L+D Q Y++L H I ++ G Y A+ +++ + PE+ + K+ G G+GLE ++ L LNAKN RV K M ++ GFQ+++N + KN ++++L+L DT+ V + P V T ++ + ++ F PK + + + A+ +K T LRS+ N +I K+ RR+HQ ELA +K E Sbjct: 286 AMGLRYKSYCSTIARTYLVDPNKAQESSYKLLTLIHNTIIKEIRDGMTAKEVYGRAVGIIKSKKPEMEKHFLKNVGWGVGLENKDPTLVLNAKNQRVLKDGMTLIINTGFQDIENPHPQDKNSKVYALVLTDTIRVTSSEPVVFTAEAPTSADANSFFFKDDEETEPAPKKEKKDSRVGAVATKNITTTRLRSERTTQVANDDIEKK--RREHQKELAAKKQRE 507 The following BLAST results are available for this feature:
BLAST of CK936847 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 25
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Sequences
The
following sequences are available for this feature:
EST sequence >CK936847 ID=CK936847; Name=CK936847; organism=Citrus sinensis; type=EST; length=811bpback to top |