EL492543

Overview
NameEL492543
Unique NameEL492543
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length259
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_RHOPS (30S ribosomal protein S16 OS=Rhodopseudomonas palustris (strain BisB5) GN=rpsP PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.171e-19
Identity = 47/80 (58.75%), Postives = 58/80 (72.50%), Query Frame = 1
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 246
            VVIRLAR G K +PFY V+ ADSR PRDG+ +E LGY+NPL  +D   R+ L+ D+VK WL+ GAQPSD V R L  AG+
Sbjct:    3 VVIRLARAGTKKRPFYHVVVADSRFPRDGRFIERLGYFNPLMAKDNEARLKLDLDKVKDWLAKGAQPSDRVARFLDTAGI 82          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_SPHWW (30S ribosomal protein S16 OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=rpsP PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.530e-19
Identity = 46/80 (57.50%), Postives = 59/80 (73.75%), Query Frame = 1
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 246
            V IRLAR G K +P+YR++ AD+RSPRDG  +E +G YNPL  +D  KR+ L+ DR K+WLSVGAQP+D V R L  AG+
Sbjct:    3 VSIRLARGGAKKRPYYRIVVADARSPRDGAFIEKIGAYNPLLAKDDPKRVVLDTDRAKHWLSVGAQPTDRVARFLDAAGV 82          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_RHOPT (30S ribosomal protein S16 OS=Rhodopseudomonas palustris (strain TIE-1) GN=rpsP PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.530e-19
Identity = 47/80 (58.75%), Postives = 58/80 (72.50%), Query Frame = 1
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 246
            VVIRLAR G K +PFY V+ ADSR PRDG+ +E LGY+NPL  +D   R+ L+ D+VK WL+ GAQPSD V R L  AG+
Sbjct:    3 VVIRLARAGTKKRPFYHVVVADSRFPRDGRFIERLGYFNPLMAKDNEARLKLDLDKVKDWLAKGAQPSDRVARFLDTAGV 82          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_RHOPA (30S ribosomal protein S16 OS=Rhodopseudomonas palustris GN=rpsP PE=1 SV=3)

HSP 1 Score: 94.7449 bits (234), Expect = 1.530e-19
Identity = 47/80 (58.75%), Postives = 58/80 (72.50%), Query Frame = 1
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 246
            VVIRLAR G K +PFY V+ ADSR PRDG+ +E LGY+NPL  +D   R+ L+ D+VK WL+ GAQPSD V R L  AG+
Sbjct:    3 VVIRLARAGTKKRPFYHVVVADSRFPRDGRFIERLGYFNPLMAKDNEARLKLDLDKVKDWLAKGAQPSDRVARFLDTAGV 82          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_ROSDO (30S ribosomal protein S16 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=rpsP PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.408e-19
Identity = 45/78 (57.69%), Postives = 59/78 (75.64%), Query Frame = 1
Query:   13 IRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 246
            IRLAR G K +PFYR++AADSR PRDG+ +E LG YNPL  +D  +R+ ++ +RV+YWL  GAQP+D V R+L  AGL
Sbjct:    5 IRLARGGSKKRPFYRIVAADSRMPRDGRFIEKLGTYNPLLPKDSEERVKMDAERVQYWLGQGAQPTDRVARMLEAAGL 82          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_RHOP2 (30S ribosomal protein S16 OS=Rhodopseudomonas palustris (strain HaA2) GN=rpsP PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.592e-19
Identity = 46/80 (57.50%), Postives = 57/80 (71.25%), Query Frame = 1
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 246
            VVIRLAR G K +PFY V+ ADSR PRDG+ +E LGY+NPL  +D   R+ L+ D+VK WL+ GAQPSD V R L   G+
Sbjct:    3 VVIRLARAGTKKRPFYHVVVADSRFPRDGRFIERLGYFNPLMAKDNEARLKLDLDKVKDWLAKGAQPSDRVARFLDITGV 82          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_RHIME (30S ribosomal protein S16 OS=Rhizobium meliloti GN=rpsP PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.915e-19
Identity = 43/82 (52.44%), Postives = 61/82 (74.39%), Query Frame = 1
Query:   13 IRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLLPPP 258
            IRLAR G K +P+Y+++ AD+RSPRDG+ LE LG +NP+  +D  KR+ LN +RV++W++ GAQP+D V R L +AGL   P
Sbjct:    5 IRLARGGSKKRPYYQIVVADARSPRDGRFLEKLGSWNPMLAKDDEKRIELNAERVQHWIAQGAQPTDRVMRFLDQAGLAKRP 86          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_NITWN (30S ribosomal protein S16 OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=rpsP PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.915e-19
Identity = 46/80 (57.50%), Postives = 58/80 (72.50%), Query Frame = 1
Query:    7 VVIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 246
            VVIRLAR G K +P Y V+AADSR PRDG+ +E LG++NPL  +D   R+ L+ D+VK WL+ GAQPSD V R L  AG+
Sbjct:    3 VVIRLARAGTKKRPVYHVVAADSRYPRDGRFIERLGHFNPLMPKDNADRLKLDLDKVKAWLAKGAQPSDRVARFLDAAGV 82          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_DINSH (30S ribosomal protein S16 OS=Dinoroseobacter shibae (strain DFL 12) GN=rpsP PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.915e-19
Identity = 44/80 (55.00%), Postives = 59/80 (73.75%), Query Frame = 1
Query:   13 IRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLLP 252
            IRLAR G K +PFYR++AADSR PRDG+ +E LG YNPL  +D   R+ ++ +RV+YWL  GA+P+D V R+L  A +LP
Sbjct:    5 IRLARGGSKKRPFYRIVAADSRMPRDGRFIEKLGTYNPLLPKDSEDRVKMDLERVQYWLGEGAKPTDRVARMLEAAEVLP 84          
BLAST of EL492543 vs. ExPASy Swiss-Prot
Match: RS16_SILPO (30S ribosomal protein S16 OS=Silicibacter pomeroyi GN=rpsP PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.295e-18
Identity = 44/79 (55.70%), Postives = 60/79 (75.95%), Query Frame = 1
Query:   13 IRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLL 249
            IRLAR G K +PFYR++AADSR PRDG+ +E LG YNPL  +D  +R+ ++ +RV+YWLS GAQ +D V R+L  AG++
Sbjct:    5 IRLARGGSKKRPFYRIVAADSRMPRDGRFIEKLGTYNPLLPKDSEERVKMDVERVQYWLSQGAQTTDRVARMLEAAGVV 83          
The following BLAST results are available for this feature:
BLAST of EL492543 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS16_RHOPS1.171e-1958.7530S ribosomal protein S16 OS=Rhodopseudomonas palu... [more]
RS16_SPHWW1.530e-1957.5030S ribosomal protein S16 OS=Sphingomonas wittichi... [more]
RS16_RHOPT1.530e-1958.7530S ribosomal protein S16 OS=Rhodopseudomonas palu... [more]
RS16_RHOPA1.530e-1958.7530S ribosomal protein S16 OS=Rhodopseudomonas palu... [more]
RS16_ROSDO3.408e-1957.6930S ribosomal protein S16 OS=Roseobacter denitrifi... [more]
RS16_RHOP27.592e-1957.5030S ribosomal protein S16 OS=Rhodopseudomonas palu... [more]
RS16_RHIME9.915e-1952.4430S ribosomal protein S16 OS=Rhizobium meliloti GN... [more]
RS16_NITWN9.915e-1957.5030S ribosomal protein S16 OS=Nitrobacter winograds... [more]
RS16_DINSH9.915e-1955.0030S ribosomal protein S16 OS=Dinoroseobacter shiba... [more]
RS16_SILPO1.295e-1855.7030S ribosomal protein S16 OS=Silicibacter pomeroyi... [more]

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Properties
Property NameValue
Genbank descriptionC2841 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC2841, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492543 ID=EL492543; Name=EL492543; organism=Citrus sinensis; type=EST; length=259bp
GACTGCGTAGTGATCCGATTGGCGAGATTCGGATGTAAGAACAAACCTTT
CTATCGGGTGATGGCTGCTGATAGCCGATCACCCAGAGATGGCAAGCATC
TTGAAGTCTTGGGCTATTACAATCCCTTGCCAGGTCAAGACTGCGGCAAA
AGAATGGGTCTGAATTTTGATAGAGTGAAGTATTGGCTATCAGTTGGTGC
CCAACCATCAGACCCTGTCCAGCGCATTCTTTTCAGGGCAGGGTTACTAC
CCCCACCTC
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