EY665387

Overview
NameEY665387
Unique NameEY665387
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1071
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665387 vs. ExPASy Swiss-Prot
Match: CRS2A_ARATH (Chloroplastic group IIB intron splicing facilitator CRS2-A, chloroplastic OS=Arabidopsis thaliana GN=CRS2A PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.638e-38
Identity = 72/117 (61.54%), Postives = 85/117 (72.65%), Query Frame = 1
Query:   97 MLYALSAPKTCISCPRGPPFPQKRQVSTRLC-VHASLP-DDNGGFKVEYTPWLIVGLGNPGIKYHGTRHNVGFDMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQA*LKF 441
            M  A S+P T    P+   F Q +  S R   + ASLP  DN   K EYTPWLIVGLGNPG+KY+GTRHN+GF+MIDHIA+A  I+MNTIQSKAL+GIGS+GEVPILL KPQ  + F
Sbjct:    1 MFCASSSPITSPLYPKAYKFSQTKSNSKRFSSLRASLPVSDNKLLKFEYTPWLIVGLGNPGLKYYGTRHNIGFEMIDHIARATDISMNTIQSKALVGIGSVGEVPILLVKPQGYMNF 117          

HSP 2 Score: 45.0542 bits (105), Expect = 1.638e-38
Identity = 29/91 (31.87%), Postives = 41/91 (45.05%), Query Frame = 2
Query:  437 NFSGESAGPLGCTLSSTAASLFIDLGEMNLRKWGSQTSTKRKAWAYKGVKNGINHLEGCREFPTRA-KYGKPHGKRD-KSLVQPNINPLKR 703
            NFSGES GPL          + +   +M L     +   K     + G+KN   HL GCR +P  +   G P G  D K+ +    +PL+R
Sbjct:  116 NFSGESVGPLAAYYQIPLRHILMIYDDMGLSNGVLRLQPKGGHSQHNGLKNVTEHLNGCRGYPRLSIGIGNPPGNMDMKAFLLQKFSPLER 206          
BLAST of EY665387 vs. ExPASy Swiss-Prot
Match: CRS2_MAIZE (Chloroplastic group IIB intron splicing facilitator CRS2, chloroplastic OS=Zea mays GN=CRS2 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.395e-32
Identity = 68/134 (50.75%), Postives = 84/134 (62.69%), Query Frame = 1
Query:   40 ALPRLCSFIVVS*KPKNRSMLYALSAPKTCISCPRGPPFPQKRQVSTRLCVHASLPDDNGGFKVEYTPWLIVGLGNPGIKYHGTRHNVGFDMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQA*LKF 441
            A+P   S       P  R    +L+AP   I  PR  PF           V +S+PD   G  VEYTPWLI GLGNPG KY+GTRHNVGF+M+D IA  + I MNTIQSK+L+GIGSIGEVP+L+ KPQ+ + +
Sbjct:    7 AIPSTSSHFSAPFLPSFRMPRKSLTAPLHRIRRPR--PFT----------VVSSVPDPAAG-PVEYTPWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVKPQSYMNY 127          

HSP 2 Score: 41.9726 bits (97), Expect = 4.395e-32
Identity = 24/47 (51.06%), Postives = 29/47 (61.70%), Query Frame = 3
Query:  447 GNRPGLLAALYQVPLLHFLLI*EK*I*GNGVPKLRQKGRHGPTKGLK 587
            G   G LAA YQVPL H LLI +     NGV +L++KG HG   GL+
Sbjct:  129 GEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQ 175          
BLAST of EY665387 vs. ExPASy Swiss-Prot
Match: CRS2B_ARATH (Chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic OS=Arabidopsis thaliana GN=CRS2B PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 4.314e-27
Identity = 73/149 (48.99%), Postives = 90/149 (60.40%), Query Frame = 1
Query:  157 PQKRQVSTRLCVHASLPDDNGGFKVEYTPWLIVGLGNPGIKYHGTRHNVGFDMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQA*LKFQW-GIGRASWLHFIKYRCFTFY*SRRNEFKEMGFPN----FDKKEGMGLQRG*K 588
            P  R+   R+C   S  +D+  FKVEYTPWLIVGLGNPG KYHGTRHNVGF+MID +A+ + + MNTIQSKALIGIG+I +VPILLAKPQ  + F    +G  +  + +  R           + EM  PN       K G G   G K
Sbjct:   18 PVFRKQRFRVCSSTSGGEDDR-FKVEYTPWLIVGLGNPGNKYHGTRHNVGFEMIDVLARKEGVLMNTIQSKALIGIGAIEDVPILLAKPQTYMNFSGESVGSLASHYRVPLRHILMI------YDEMALPNGVLRLQPKGGQGYHNGVK 159          
BLAST of EY665387 vs. ExPASy Swiss-Prot
Match: CRS2_ORYSJ (Chloroplastic group IIB intron splicing facilitator CRS2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0132800 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.255e-26
Identity = 68/146 (46.58%), Postives = 89/146 (60.96%), Query Frame = 1
Query:  160 QKRQVSTRLCVHASLPDDNGGFKVEYTPWLIVGLGNPGIKYHGTRHNVGFDMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQA*LKFQW-GIGRASWLHFIKYRCFTFY*SRRNEFKEMGFPN----FDKKEGMGLQRG 582
            ++ ++  R+ V AS+PD       EYTPWLI GLGNPG KYHGTRHNVGF+M+D IA+ + I MNTIQSK+L+GIGSIGEVP+LL KPQ+ + +    IG  +  + +  R           + EM  PN      +K G G   G
Sbjct:   38 RRTRLRRRIAVVASVPDP-AARPAEYTPWLIAGLGNPGSKYHGTRHNVGFEMVDRIARDEGITMNTIQSKSLLGIGSIGEVPVLLVKPQSYINYSGEAIGPLAAYYQVPLRHILVM------YDEMSLPNGVLRLQRKGGHGRHNG 176          
BLAST of EY665387 vs. ExPASy Swiss-Prot
Match: PTHM_ORYSJ (Peptidyl-tRNA hydrolase, mitochondrial OS=Oryza sativa subsp. japonica GN=Os01g0693900 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 8.909e-22
Identity = 44/77 (57.14%), Postives = 57/77 (74.03%), Query Frame = 1
Query:  196 ASLPDDNGGFKVEYTPWLIVGLGNPGIKYHGTRHNVGFDMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQ 426
            A+   D G  K    PWL VGLGNPG  Y GTRHNVGF+MID IA+A+ I+++++Q KA++G G IG+ PI+LAKPQ
Sbjct:   44 AAAAGDGGALK----PWLFVGLGNPGKVYQGTRHNVGFEMIDVIAEAEGISLSSMQFKAMVGKGRIGDAPIMLAKPQ 116          

HSP 2 Score: 33.8834 bits (76), Expect = 8.909e-22
Identity = 24/77 (31.17%), Postives = 36/77 (46.75%), Query Frame = 2
Query:  437 NFSGESAGPLGCTLSSTAASLFIDLGEMNLRKWGSQTSTKRKAWAYKGVKNGINHLEGCREFP-TRAKYGKPHGKRD 664
            N SGES G L          + +   +++L     +   K     + GV++ INHL+  R+FP  R   G+P GK D
Sbjct:  120 NASGESVGQLVSYFKIPLNQVLVMYDDLDLPFAKLRLLPKGGHGGHNGVRSIINHLKQNRDFPRLRIGIGRPPGKMD 196          
BLAST of EY665387 vs. ExPASy Swiss-Prot
Match: PTHM_ARATH (Peptidyl-tRNA hydrolase, mitochondrial OS=Arabidopsis thaliana GN=At5g19830 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.616e-20
Identity = 35/64 (54.69%), Postives = 49/64 (76.56%), Query Frame = 1
Query:  235 YTPWLIVGLGNPGIKYHGTRHNVGFDMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQ 426
            + PWL +GLGNPG KY GTRHN+GF+MID  A++  I MN +  KA++G G + ++P++LAKPQ
Sbjct:   16 HRPWLFLGLGNPGDKYKGTRHNIGFEMIDVFAESVGIQMNLVNFKAIMGQGFVADLPVILAKPQ 79          

HSP 2 Score: 37.7354 bits (86), Expect = 1.616e-20
Identity = 25/77 (32.47%), Postives = 35/77 (45.45%), Query Frame = 2
Query:  437 NFSGESAGPLGCTLSSTAASLFIDLGEMNLRKWGSQTSTKRKAWAYKGVKNGINHLEGCREFP-TRAKYGKPHGKRD 664
            N SGES+GPL          + +   +M L     +   K     + G+K+ +NH  G REF   R   GKP G+ D
Sbjct:   83 NLSGESSGPLAAYYKLPLNRVLVVHDDMQLPCGVLRLQEKGGHGCHNGLKSVMNHFRGNREFARLRIGIGKPPGQMD 159          
BLAST of EY665387 vs. ExPASy Swiss-Prot
Match: PTHC_ARATH (Peptidyl-tRNA hydrolase, chloroplastic OS=Arabidopsis thaliana GN=At1g18440 PE=2 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 4.324e-19
Identity = 43/62 (69.35%), Postives = 51/62 (82.26%), Query Frame = 1
Query:  241 PWLIVGLGNPGIKYHGTRHNVGFDMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQ 426
            PWLIVGLGNPG KY GTRHNVGF+M+D +A A+ I+MNT+  KAL G G IG +PI+LAKPQ
Sbjct:   94 PWLIVGLGNPGKKYQGTRHNVGFEMVDALADAEGISMNTVNFKALFGKGVIGNIPIMLAKPQ 155          
BLAST of EY665387 vs. ExPASy Swiss-Prot
Match: CRS2L_ORYSJ (CRS2-like protein, chloroplastic OS=Oryza sativa subsp. japonica GN=Os03g0347800 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 9.471e-17
Identity = 49/92 (53.26%), Postives = 55/92 (59.78%), Query Frame = 1
Query:  151 PFPQKRQVSTRLCVHASLPDDNGGFKVEYTPWLIVGLGNPGIKYHGTRHNVGFDMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQ 426
            PF  KR  ST      SL   +    V   PWL VGLGNPG KY  TRHNVGFDMID  AQ+Q I++     KAL G G +  VP+LLAKPQ
Sbjct:   34 PFISKRHASTS---QTSLSSSSSSCSV-INPWLFVGLGNPGEKYQCTRHNVGFDMIDMFAQSQGISLTRHPFKALFGEGMVEGVPVLLAKPQ 121          

HSP 2 Score: 21.9422 bits (45), Expect = 9.471e-17
Identity = 10/30 (33.33%), Postives = 14/30 (46.67%), Query Frame = 2
Query:  437 NFSGESAGPLGCTLSSTAASLFIDLGEMNL 526
            N SGES GPL          + +   +M+L
Sbjct:  125 NLSGESVGPLAAYYKLPLNRVLVAFDDMDL 154          
BLAST of EY665387 vs. ExPASy Swiss-Prot
Match: PTH_CLOD6 (Peptidyl-tRNA hydrolase OS=Clostridium difficile (strain 630) GN=pth PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 3.002e-12
Identity = 34/61 (55.74%), Postives = 45/61 (73.77%), Query Frame = 1
Query:  244 WLIVGLGNPGIKYHGTRHNVGFDMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQ 426
            +++VGLGNPG KY  TRHNVGFD+ID +A+   I++  I+ KALIG G +G   +LL KPQ
Sbjct:    2 YVVVGLGNPGKKYEKTRHNVGFDVIDILAKEYNISVTKIKHKALIGEGRVGTEKVLLVKPQ 62          
BLAST of EY665387 vs. ExPASy Swiss-Prot
Match: PTH_ALKMQ (Peptidyl-tRNA hydrolase OS=Alkaliphilus metalliredigens (strain QYMF) GN=pth PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.920e-12
Identity = 35/61 (57.38%), Postives = 44/61 (72.13%), Query Frame = 1
Query:  244 WLIVGLGNPGIKYHGTRHNVGFDMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQ 426
            ++IVGLGNPG KY GTRHNVGFD+ID +A    I +N ++ KAL G   IG   ++LAKPQ
Sbjct:    2 YIIVGLGNPGKKYSGTRHNVGFDVIDLLAHRLGITVNKLKHKALYGEARIGGEKVILAKPQ 62          
The following BLAST results are available for this feature:
BLAST of EY665387 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
CRS2A_ARATH1.638e-3861.54Chloroplastic group IIB intron splicing facilitato... [more]
CRS2_MAIZE4.395e-3250.75Chloroplastic group IIB intron splicing facilitato... [more]
CRS2B_ARATH4.314e-2748.99Chloroplastic group IIB intron splicing facilitato... [more]
CRS2_ORYSJ1.255e-2646.58Chloroplastic group IIB intron splicing facilitato... [more]
PTHM_ORYSJ8.909e-2257.14Peptidyl-tRNA hydrolase, mitochondrial OS=Oryza sa... [more]
PTHM_ARATH1.616e-2054.69Peptidyl-tRNA hydrolase, mitochondrial OS=Arabidop... [more]
PTHC_ARATH4.324e-1969.35Peptidyl-tRNA hydrolase, chloroplastic OS=Arabidop... [more]
CRS2L_ORYSJ9.471e-1753.26CRS2-like protein, chloroplastic OS=Oryza sativa s... [more]
PTH_CLOD63.002e-1255.74Peptidyl-tRNA hydrolase OS=Clostridium difficile (... [more]
PTH_ALKMQ3.920e-1257.38Peptidyl-tRNA hydrolase OS=Alkaliphilus metallired... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-007-C12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665387 ID=EY665387; Name=EY665387; organism=Citrus sinensis; type=EST; length=1071bp
AACCAACACAAGCAGAAACGTTATACCGCCTCGAACTGAGCTCTGCCACG
CCTCTGTTCTTTCATCGTTGTGTCTTAGAAACCCAAGAATAGGTCAATGT
TGTATGCACTCTCTGCCCCAAAAACTTGCATTTCCTGTCCGAGAGGGCCT
CCCTTTCCTCAAAAGCGTCAAGTTTCAACAAGGCTTTGTGTGCATGCTTC
GTTGCCAGATGATAATGGTGGATTTAAAGTGGAGTATACACCTTGGTTGA
TTGTCGGATTGGGTAACCCTGGGATTAAGTACCACGGCACTAGGCACAAT
GTTGGATTTGACATGATTGATCACATTGCTCAAGCGCAACGCATTGCTAT
GAACACAATACAGTCAAAGGCTTTAATTGGAATAGGTTCCATTGGAGAGG
TGCCGATTTTGTTGGCAAAACCTCAGGCATAACTGAAATTTCAGTGGGGA
ATCGGCCGGGCCTCTTGGCTGCACTTTATCAAGTACCGCTGCTTCACTTT
TTATTGATCTAGGAGAAATGAATTTAAGGAAATGGGGTTCCCAAACTTCG
ACAAAAAGGAAGGCATGGGCCTACAAAGGGGTTAAAAATGGGATAAACCA
CCTGGAGGGTTGCAGGGAGTTCCCCACGAGGGCAAAGTATGGGAAACCAC
ATGGAAAAAGGGATAAAAGTTTAGTTCAACCGAATATCAACCCACTGAAG
CGGGACACATTTGTCCGCCCATGACAAAGAGAGTAAAACCAGAAACACTA
TAGCGCAAGAGATATAACAGAATGTTGACAAGTTAGCGGGGAAAGGAATC
ACGACACGAAGGTGGAAGGAGACAGAGAAGAATAGAGAGAAAGAGATAAA
AGACAGAAGAAGGAACAAGCGATGGTAAAAAAAAAATTGTACAACACAAT
ATAATGTACAAATACGAAAAAAAAATGACAGGATAAAAACTGCGAGAGCC
AAAGACGATGAAAACGAAAAACACTATAGATCATGAAAATAATAAAAAGA
CAAAGAAGGGATAACAGGAAATAAAAAGAGAAAANAAAGGAACAAAAATA
AACCACAGCAAACAACAAAAC
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