CV884410

Overview
NameCV884410
Unique NameCV884410
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length851
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig614 contig Csv1_Contig614:119..969. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884410 vs. ExPASy Swiss-Prot
Match: TTC38_PONAB (Tetratricopeptide repeat protein 38 OS=Pongo abelii GN=TTC38 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.198e-15
Identity = 50/165 (30.30%), Postives = 81/165 (49.09%), Query Frame = 1
Query:  313 AVESHSKLLKEFPRDLLSLKRTQILCFYMGRPDLCFDIIHQVLPYNQQE----DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEEXXXXXXXXXXFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPGAV 795
            A E   ++L++ P D+L+LK +    FY+G  +   D + ++ P+   +     ++ GI +F L+E      AE+ AK+ L IN  D WS H + H+ +     K+ ++FM+            +  HN+WH AL YL         L IYD HI   L+  GA+
Sbjct:  127 ACELWEQILQDHPTDMLALKFSHDAYFYLGYQEQMRDSVARIYPFWTPDIPLSSYVKGIYSFGLMETNFYDQAEKLAKEALSINPTDAWSVHTVAHIHEMKAEIKDGLEFMQH-SETLWKDSDMLACHNYWHWAL-YLIEKGEYEAALTIYDTHILPSLQANGAM 289          
BLAST of CV884410 vs. ExPASy Swiss-Prot
Match: TTC38_HUMAN (Tetratricopeptide repeat protein 38 OS=Homo sapiens GN=TTC38 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.767e-15
Identity = 49/165 (29.70%), Postives = 80/165 (48.48%), Query Frame = 1
Query:  313 AVESHSKLLKEFPRDLLSLKRTQILCFYMGRPDLCFDIIHQVLPYNQQE----DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEEXXXXXXXXXXFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPGAV 795
            A E   ++L++ P D+L+LK +    FY+G  +   D + ++ P+   +     ++ GI +F L+E      AE+ AK+ L IN  D WS H + H+ +     K+ ++FM+            +  HN+WH AL YL         L IYD HI   L+   A+
Sbjct:  127 ACELWEQILQDHPTDMLALKFSHDAYFYLGYQEQMRDSVARIYPFWTPDIPLSSYVKGIYSFGLMETNFYDQAEKLAKEALSINPTDAWSVHTVAHIHEMKAEIKDGLEFMQH-SETFWKDSDMLACHNYWHWAL-YLIEKGEYEAALTIYDTHILPSLQANDAM 289          
BLAST of CV884410 vs. ExPASy Swiss-Prot
Match: TTC38_MOUSE (Tetratricopeptide repeat protein 38 OS=Mus musculus GN=Ttc38 PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.730e-14
Identity = 48/165 (29.09%), Postives = 81/165 (49.09%), Query Frame = 1
Query:  313 AVESHSKLLKEFPRDLLSLKRTQILCFYMGRPDLCFDIIHQVLPYNQQE----DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEEXXXXXXXXXXFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPGAV 795
            A +   ++L++ P D+L+LK +    FY+G  +   D + +V P+   +     ++ GI +F L+E      A++ AK+ L I   D WS H + HV +     K+ ++FM++           +  HN+WH AL YL         L IYD+HI   L+  G +
Sbjct:  123 ACDLWEQILRDHPTDMLALKFSHDAYFYLGYQEQMRDSVARVYPFWTPDIPLNSYVKGIYSFGLMETNFYDQAQKLAKEALSIEPTDAWSVHTVAHVHEMRAEIKDGLEFMQQ-SEGHWKDSDMLACHNYWHWAL-YLIEKGDYEAALTIYDSHILPSLQASGTM 285          
BLAST of CV884410 vs. ExPASy Swiss-Prot
Match: TTC38_XENLA (Tetratricopeptide repeat protein 38 OS=Xenopus laevis GN=ttc38 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.263e-13
Identity = 48/155 (30.97%), Postives = 72/155 (46.45%), Query Frame = 1
Query:  313 AVESHSKLLKEFPRDLLSLKRTQILCFYMGRPDLCFDIIHQVLPYNQQE----DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEEXXXXXXXXXXFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHI 765
            A +   ++L+  P DLL+LK      FY+G      D + +VLPY + E     ++ G+ +F LLE      A + AK+ L + + D WS H + HV +        + FM+E           +  H +WH AL YL         L +YDNHI
Sbjct:  126 AADLWERILQSHPTDLLALKFAHDCYFYLGEQRQMRDSVARVLPYWKPETPLSSYVKGMYSFGLLETNFYDQALKVAKEALAVERTDSWSVHTIAHVHEMKADLDSGLSFMQE-TENNWKGSDMLACHVYWHWAL-YLIEKGDYEAALTLYDNHI 278          
BLAST of CV884410 vs. ExPASy Swiss-Prot
Match: TTC38_XENTR (Tetratricopeptide repeat protein 38 OS=Xenopus tropicalis GN=ttc38 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.240e-12
Identity = 46/155 (29.68%), Postives = 72/155 (46.45%), Query Frame = 1
Query:  313 AVESHSKLLKEFPRDLLSLKRTQILCFYMGRPDLCFDIIHQVLPY----NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEEXXXXXXXXXXFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHI 765
            A +   ++L+  P DLL+LK      FY+G      D + +VLPY         ++ G+ +F LLE      A + AK+ L +++ D WS H + HV +        + FM+E           +  H +WH AL ++E        L +YDNHI
Sbjct:  126 AADLWERILQNHPTDLLALKFAHDCYFYLGEQRQMRDSVARVLPYWKPGTPLSSYVKGMYSFGLLETNFYDQALKVAKEALAVDQTDSWSVHTVAHVHEMRADLDSGLAFMQE-TENNWKGSDMLACHVYWHWALYFIE-KGDYEAALTLYDNHI 278          
BLAST of CV884410 vs. ExPASy Swiss-Prot
Match: TTC38_DANRE (Tetratricopeptide repeat protein 38 OS=Danio rerio GN=ttc38 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.054e-11
Identity = 47/165 (28.48%), Postives = 78/165 (47.27%), Query Frame = 1
Query:  313 AVESHSKLLKEFPRDLLSLKRTQILCFYMGRPDLCFDIIHQVLPYNQQEDFIF----GILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEEXXXXXXXXXXFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPGAV 795
            A E    +L + P DLL+LK      FY+G      D + +V+P+ +    ++    G+ +F LLE     +AE+ AK+ L +   D WS HA+ HV +     ++ + FM             +  HN+WH AL ++E        L+I+D  + +   K GA+
Sbjct:  126 ACEVWECILADHPTDLLALKFAHDGFFYLGEQTQMRDSVARVMPHWKPHMPLYRQIKGMYSFGLLETRLYDEAEKMAKEALSLTPEDGWSVHAVAHVHEMKAEVEKGLNFMAS-TEKNWTVCDMLACHNYWHWALYHIE-KGNYEAALKIFDEQVSQRCVKSGAM 288          
The following BLAST results are available for this feature:
BLAST of CV884410 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
TTC38_PONAB1.198e-1530.30Tetratricopeptide repeat protein 38 OS=Pongo abeli... [more]
TTC38_HUMAN7.767e-1529.70Tetratricopeptide repeat protein 38 OS=Homo sapien... [more]
TTC38_MOUSE1.730e-1429.09Tetratricopeptide repeat protein 38 OS=Mus musculu... [more]
TTC38_XENLA3.263e-1330.97Tetratricopeptide repeat protein 38 OS=Xenopus lae... [more]
TTC38_XENTR1.240e-1229.68Tetratricopeptide repeat protein 38 OS=Xenopus tro... [more]
TTC38_DANRE3.054e-1128.48Tetratricopeptide repeat protein 38 OS=Danio rerio... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_003C05_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T3_C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884410 ID=CV884410; Name=CV884410; organism=Citrus sinensis; type=EST; length=851bp
GTGAAATTAGAGAGATGGGGTTACGAAGTTAAGACCTCCTCTGATTCTTG
CATCTGTGCCATCAACGCCTACTATCACCAGGTGCTTAGTTATGGGAGAG
AGAGGCGTGTGATATTAGAAGCGGCTGAGCATGACAAAGATTGTGTTTTG
GCTAATATTTTGGCTGCTCATTTCCTATCGTCCAGTGATTCTTTTAAAGC
TTCTTTGCATATTCGGGCAGCTAAGTCTCGTCTGGATGAAGCTACCACAT
ACGAGAAGGCAGTTTTCTACGCTGTCTGTTATTTGATTTCTGATGACAGA
GACGATGAAGTGGCCGTTGAGTCGCACTCTAAGCTTCTGAAAGAGTTTCC
AAGAGATCTGCTTTCTCTGAAAAGGACCCAAATACTCTGCTTCTACATGG
GCCGCCCTGATCTGTGTTTCGATATTATTCATCAGGTTCTGCCCTATAAT
CAACAAGAAGATTTCATATTTGGCATTCTTGCGTTTTCGTTGCTAGAGCT
TGGACAGATGTCAGATGCTGAGGAAGCTGCTAAAAAGGGACTTAAAATCA
ACAAACATGACTGCTGGTCTCAACATGCTCTGTGCCATGTTCTCCAGCAT
GATTGTTGTTTTAAAGAAGCAGTACAGTTCATGGAAGAATGCTCGTCCAC
ATGGAGTTCTTGTTCATCATTCATGTATACACACAATTGGTGGCACGTGG
CGCTCTGTTACTTGGAAGGTCATTCTCCAATGAGAAAAGTCCTGGAGATT
TACGATAATCATATCTGGAAGGAGTTAGAGAAGCCTGGTGCTGTGCATCC
AGAGGTGTACCTGAATGCTCTGGGCTTGTTGTTGCGAGTTTATGTACGGG
G
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