CV884405

Overview
NameCV884405
Unique NameCV884405
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length891
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3337 contig Csv1_Contig3337:514..1404. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_ORYSJ (Histidyl-tRNA synthetase OS=Oryza sativa subsp. japonica GN=Os05g0150900 PE=2 SV=2)

HSP 1 Score: 246.899 bits (629), Expect = 1.152e-64
Identity = 124/198 (62.63%), Postives = 159/198 (80.30%), Query Frame = -3
Query:  290 NSSAKLALDDLEIFFQALEKSKCIDKVVFDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPLAAELVSELWNAKVKAEYMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRL 883
            N+ +  AL++LEI F+AL+K+  I K+VFDLSLARGLDYYTGVI+EA+FKG TQVGSIAAGGRYDNL+GMF  KQVPAVGVSLGIERVF IMEQ + E+NQ IRATET+VLV ++G  L LAAELVSELWNA +KAE+ +  ++   +  A +S IPWMV+VGE E++ G VKLKN+  +QEE + R+ F + ++++L
Sbjct:  589 NAGSVTALNELEILFKALDKANAIGKIVFDLSLARGLDYYTGVIYEAVFKGTTQVGSIAAGGRYDNLVGMFSGKQVPAVGVSLGIERVFAIMEQQEMEKNQ-IRATETEVLVSIIGKDLILAAELVSELWNAGIKAEFKLTTRIQNHLKYATQSGIPWMVLVGESEISSGKVKLKNLAASQEEEVDRTEFAQVLKQKL 785          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYHC_MOUSE (Histidyl-tRNA synthetase, cytoplasmic OS=Mus musculus GN=Hars PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.761e-42
Identity = 100/214 (46.73%), Postives = 141/214 (65.89%), Query Frame = -3
Query:  284 ENSSAKLALDDLEIFFQALEKSKCIDKVVFDLSLARGLDYYTGVIFEAIF-KGATQ-------VGSIAAGGRYDNLIGMFGTK--QVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKL-PLAAELVSELWNAKVKAEYMVHK--KVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLNQ 886
            +N  A   L DL++ F+ L      DK+ FDLSLARGLDYYTGVI+EA+  +  TQ       VGSIAAGGRYD L+GMF  K  +VP VG+S+G+ER+F+I+EQ  +   + +R TETQVLV     KL     +LVSELW+A +KAE +  K  K++  +    E+ IP + I+GE+EL +G++KL+++ + +E  + R + VEEI+RR NQ
Sbjct:  291 QNKQAVEGLGDLKLLFEYLILFGIDDKISFDLSLARGLDYYTGVIYEAVLLQMPTQAGEEPLGVGSIAAGGRYDGLVGMFDPKGRKVPCVGLSIGVERIFSIVEQRLEASEEKVRTTETQVLVASAQKKLLEERLKLVSELWDAGIKAELLYKKNPKLLNQLQYCEEAGIPLVAIIGEQELKDGVIKLRSVASREEVDVQREDLVEEIRRRTNQ 504          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYHC_TAKRU (Histidyl-tRNA synthetase, cytoplasmic OS=Takifugu rubripes GN=hars PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 4.710e-42
Identity = 101/225 (44.89%), Postives = 139/225 (61.78%), Query Frame = -3
Query:  293 ENSSAKLALDDLEIFFQALEKSKCIDKVVFDLSLARGLDYYTGVIFEAIFKGA------------------TQVGSIAAGGRYDNLIGMFGTK--QVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLV-----GLLGDKLPLAAELVSELWNAKVKAEYMVHK--KVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRR 886
            +++ A   L D+++ F  L+  +  DKVVFDLSLARGLDYYTG+I+EAI   A                    VGS+A GGRYD L+GMF  K  +VP VGVS+GIER+F+IMEQ  +   + IR TE QV+V      LL ++L     L++ELWNA +KAE M  K  K++  +    ES IP + I+GE+EL  G+VKL+N+ T  E  ISR++ + EI++R
Sbjct:  296 QSTQACAGLTDIKLLFSYLQLFQVTDKVVFDLSLARGLDYYTGIIYEAILTQAGVAPVAPETSNEAPTEECVTVGSVAGGGRYDGLVGMFDPKGRKVPCVGVSIGIERIFSIMEQKAEASTEKIRTTEVQVMVAAAQKNLLEERL----RLITELWNAGIKAELMYKKSPKLLSQLQHCEESGIPLVAILGEQELKNGVVKLRNVATRDEVDISRADLIAEIKKR 516          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYHM_HUMAN (Probable histidyl-tRNA synthetase, mitochondrial OS=Homo sapiens GN=HARS2 PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 6.152e-42
Identity = 94/214 (43.93%), Postives = 138/214 (64.49%), Query Frame = -3
Query:  284 ENSSAKLALDDLEIFFQALEKSKCIDKVVFDLSLARGLDYYTGVIFEAIF--------KGATQVGSIAAGGRYDNLIGMFGTK--QVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDK-LPLAAELVSELWNAKVKAE--YMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLNQ 886
            +N  A   L DL++ F+ L      DK+ FDLSLARGLDYYTGVI+EA+         +    VGS+AAGGRYD L+GMF  K  +VP VG+S+G+ER+F I+EQ  K + + +R TETQV V       L    +L++ELW++ +KAE  Y  + K++  +     + IP +VI+GE+EL EG++K++++ + +E  I R NFV EIQ+RL++
Sbjct:  292 QNKQALEGLGDLKLLFEYLTLFGIADKISFDLSLARGLDYYTGVIYEAVLLQTPTQAGEEPLNVGSVAAGGRYDGLVGMFDPKGHKVPCVGLSIGVERIFYIVEQRMKTKGEKVRTTETQVFVATPQKNFLQERLKLIAELWDSGIKAEMLYKNNPKLLTQLHYCESTGIPLVVIIGEQELKEGVIKIRSVASREEVAIKRENFVAEIQKRLSE 505          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYHM_PONAB (Probable histidyl-tRNA synthetase, mitochondrial OS=Pongo abelii GN=HARS2 PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 8.034e-42
Identity = 94/214 (43.93%), Postives = 138/214 (64.49%), Query Frame = -3
Query:  284 ENSSAKLALDDLEIFFQALEKSKCIDKVVFDLSLARGLDYYTGVIFEAIF--------KGATQVGSIAAGGRYDNLIGMFGTK--QVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGL-LGDKLPLAAELVSELWNAKVKAE--YMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLNQ 886
            +N  A   L DL++ F+ L      DK+ FDLSLARGLDYYTGVI+EA+         +    VGS+AAGGRYD L+GMF  K  +VP VG+S+G+ER+F I+EQ  K + + +R TETQV V     + L    +L++ELWN+ +KAE  Y  + K++  +     + IP +VI+GE+EL EG++K++++ + +E  I R N V EIQ+RL++
Sbjct:  292 QNKQALEGLGDLKLLFEYLTLFGIADKISFDLSLARGLDYYTGVIYEAVLLQTPTQAGEEPLNVGSVAAGGRYDGLVGMFDPKGHKVPCVGLSIGVERIFYIVEQRMKTKGEKVRTTETQVFVATPQKNFLQERLKLIAELWNSGIKAEMLYKNNPKLLTQLHYCESTGIPLVVIIGEQELKEGVIKIRSVASREEVAIKRENLVAEIQKRLSE 505          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYHC_HUMAN (Histidyl-tRNA synthetase, cytoplasmic OS=Homo sapiens GN=HARS PE=1 SV=2)

HSP 1 Score: 170.244 bits (430), Expect = 1.370e-41
Identity = 97/214 (45.33%), Postives = 138/214 (64.49%), Query Frame = -3
Query:  284 ENSSAKLALDDLEIFFQALEKSKCIDKVVFDLSLARGLDYYTGVIFEAIF--------KGATQVGSIAAGGRYDNLIGMFGTK--QVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDK-LPLAAELVSELWNAKVKAE--YMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLNQ 886
            +N  A   L DL++ F+ L      DK+ FDLSLARGLDYYTGVI+EA+         +    VGS+AAGGRYD L+GMF  K  +VP VG+S+G+ER+F+I+EQ  +   + IR TETQVLV     K L    +LVSELW+A +KAE  Y  + K++  +    E+ IP + I+GE+EL +G++KL+++ + +E  + R + VEEI+RR  Q
Sbjct:  291 QNKQALEGLGDLKLLFEYLTLFGIDDKISFDLSLARGLDYYTGVIYEAVLLQTPAQAGEEPLGVGSVAAGGRYDGLVGMFDPKGRKVPCVGLSIGVERIFSIVEQRLEALEEKIRTTETQVLVASAQKKLLEERLKLVSELWDAGIKAELLYKKNPKLLNQLQYCEEAGIPLVAIIGEQELKDGVIKLRSVTSREEVDVRREDLVEEIKRRTGQ 504          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYHC_BOVIN (Histidyl-tRNA synthetase, cytoplasmic OS=Bos taurus GN=HARS PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.370e-41
Identity = 95/214 (44.39%), Postives = 139/214 (64.95%), Query Frame = -3
Query:  284 ENSSAKLALDDLEIFFQALEKSKCIDKVVFDLSLARGLDYYTGVIFEAIF--------KGATQVGSIAAGGRYDNLIGMFGTK--QVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDK-LPLAAELVSELWNAKVKAE--YMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLNQ 886
            +N  A   L DL++ F+ L      DK+ FDLSLARGLDYYTGVI+EA+         +    VGS+AAGGRYD L+GMF  K  +VP VG+S+G+ER+F+I+EQ  +   + +R TETQVLV     K L    +L+SELW+A +KAE  Y  + K++  +    E+ IP + I+GE+EL +G++KL+++ + +E  + R + VEEI+RR +Q
Sbjct:  291 QNKQALEGLGDLKLLFEYLTLFGIADKISFDLSLARGLDYYTGVIYEAVLLQPPARAGEEPLGVGSVAAGGRYDGLVGMFDPKGRKVPCVGLSIGVERIFSIVEQRLEALEEKVRTTETQVLVASAQKKLLEERLKLISELWDAGIKAELLYKKNPKLLNQLQYCEETGIPLVAIIGEQELKDGVIKLRSVASREEVDVRREDLVEEIKRRTSQ 504          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYHC_PONAB (Histidyl-tRNA synthetase, cytoplasmic OS=Pongo abelii GN=HARS PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 6.801e-41
Identity = 95/214 (44.39%), Postives = 138/214 (64.49%), Query Frame = -3
Query:  284 ENSSAKLALDDLEIFFQALEKSKCIDKVVFDLSLARGLDYYTGVIFEAIF--------KGATQVGSIAAGGRYDNLIGMFGTK--QVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDK-LPLAAELVSELWNAKVKAE--YMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLNQ 886
            ++  A   L DL++ F+ L      DK+ FDLSLARGLDYYTGVI+EA+         +    VGS+AAGGRYD L+GMF  K  +VP VG+S+G+ER+F+I+EQ  +   + +R TETQVLV     K L    +LVSELW+A +KAE  Y  + K++  +    E+ IP + I+GE+EL +G++KL+++ + +E  + R + VEEI+RR  Q
Sbjct:  291 QSKQALEGLGDLKLLFEYLTLFGIDDKISFDLSLARGLDYYTGVIYEAVLLQTPAQAGEEPLGVGSVAAGGRYDGLVGMFDPKGRKVPCVGLSIGVERIFSIVEQRLEALEEKVRTTETQVLVASAQKKLLEERLKLVSELWDAGIKAELLYKKNPKLLNQLQYCEEAGIPLVAIIGEQELEDGVIKLRSVTSREEVDVRREDLVEEIKRRTGQ 504          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYHC_DICDI (Histidyl-tRNA synthetase, cytoplasmic OS=Dictyostelium discoideum GN=hisS PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 1.160e-40
Identity = 93/202 (46.04%), Postives = 128/202 (63.37%), Query Frame = -3
Query:  287 NSSAKLALDDLEIFFQALEKSKCIDKVVFDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQV-LVGLLGDKLPLAAELVSELWNAKVKAE--YMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLN 883
            N  A  AL  LE  F  LE       ++FDLSLARGLDYYTG+I+EA+  G  +VGSIAAGGRYD L+GM+G K VPAVG S+GIER+FTI+E   K+ N+ IR   TQV +V +  D +     +VSELW A + AE  Y V+ K+   ++ A ES IP ++I+G+ E+    + +K +   ++  I RSNF  +I+  L+
Sbjct:  276 NKDATEALSQLETLFGYLECFGVTQHILFDLSLARGLDYYTGIIYEAVLTGQDRVGSIAAGGRYDGLVGMYGKKDVPAVGFSIGIERIFTILEDEYKKENKKIRENATQVFVVQMEKDLIKERLAIVSELWKAGINAEFSYKVNPKLPAQLNTADESNIPLIIIIGKSEVETNSLSVKTMHDRKQVSIERSNFTVKIKEILS 477          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYHM_BOVIN (Probable histidyl-tRNA synthetase, mitochondrial OS=Bos taurus GN=HARS2 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 4.409e-40
Identity = 94/214 (43.93%), Postives = 137/214 (64.02%), Query Frame = -3
Query:  284 ENSSAKLALDDLEIFFQALEKSKCIDKVVFDLSLARGLDYYTGVIFEAIF--------KGATQVGSIAAGGRYDNLIGMFGTK--QVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGL-LGDKLPLAAELVSELWNAKVKAE--YMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLNQ 886
            +N  A   L DL++ F+ L      +KV FDLSLARGLDYYTGVI+EA+         +    +GS+AAGGRYD L+GMF  +  +VP VG+S+G+ER+F+I+EQ  K   + IR TETQV V     + L    +L++ELW+A +KAE  Y  + K++  +       IP +VI+GE+EL EG++KL+++ + +E  I R N V EIQ+RL++
Sbjct:  292 QNKQALEGLGDLKLLFEYLTLFGVAEKVSFDLSLARGLDYYTGVIYEAVLLQTPVHAEEEPLNMGSVAAGGRYDGLVGMFDPRGHKVPCVGLSIGVERIFSIVEQRIKTFGEKIRTTETQVFVATPQKNFLQERLKLIAELWDAGIKAELMYKNNPKLLPQLHYCENMGIPLVVIIGEQELKEGVIKLRSVASREEVAIKRENLVAEIQKRLSE 505          
The following BLAST results are available for this feature:
BLAST of CV884405 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 401
Match NameE-valueIdentityDescription
SYH_ORYSJ1.152e-6462.63Histidyl-tRNA synthetase OS=Oryza sativa subsp. ja... [more]
SYHC_MOUSE2.761e-4246.73Histidyl-tRNA synthetase, cytoplasmic OS=Mus muscu... [more]
SYHC_TAKRU4.710e-4244.89Histidyl-tRNA synthetase, cytoplasmic OS=Takifugu ... [more]
SYHM_HUMAN6.152e-4243.93Probable histidyl-tRNA synthetase, mitochondrial O... [more]
SYHM_PONAB8.034e-4243.93Probable histidyl-tRNA synthetase, mitochondrial O... [more]
SYHC_HUMAN1.370e-4145.33Histidyl-tRNA synthetase, cytoplasmic OS=Homo sapi... [more]
SYHC_BOVIN1.370e-4144.39Histidyl-tRNA synthetase, cytoplasmic OS=Bos tauru... [more]
SYHC_PONAB6.801e-4144.39Histidyl-tRNA synthetase, cytoplasmic OS=Pongo abe... [more]
SYHC_DICDI1.160e-4046.04Histidyl-tRNA synthetase, cytoplasmic OS=Dictyoste... [more]
SYHM_BOVIN4.409e-4043.93Probable histidyl-tRNA synthetase, mitochondrial O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_003C02_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T7_C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884405 ID=CV884405; Name=CV884405; organism=Citrus sinensis; type=EST; length=891bp
TTTTTTTTTTTTTTTTTCATCAAAATTCTTTAATTAAAATTCTCGAATCT
ATAAAATGACAACCATTATAATATCGGACAATTTCTACAGGGGAAAATGG
GAGAAAAAAACAAACAACAAATCATCTTCAATTCAATTTTTTACACGTTC
GTTACCAATTTGTCGAGATGCAGATATCAGACATGCCGTTGCAGCTAATG
ACATGCAGATTAATTGATATTCCAAGCGTTGTGTAACGTAGCAGAATGGC
TTAAAGTTGTGCTTCAACTAAATATTACGTTCATTGGTTCAATCGTCTTT
GAATTTCCTCAACAAAGTTACTTCTGGAAATAACCTCCTCTTGAGTGGTG
TCAATGTTCTTTAATTTTACTATTCCTTCATTCAGCTCGCGCTCACCCAC
AATTACCATCCAAGGGATTTTCGACTCCCTGGCACGATCAATGAGCTTCA
TCACTTTCTTATGGACCATGTATTCTGCTTTCACCTTGGCATTCCACAGC
TCGCTGACCAGTTCAGCAGCTAGAGGAAGTTTATCCCCGAGCAAGCCCAC
AAGTACTTGCGTCTCGGTGGCTCGAATTATCTGGTTCCTTTCTTTTTGAA
TCTGCTCCATTATAGTAAAGACTCGCTCAATTCCAAGACTGACACCAACT
GCAGGAACCTGCTTTGTACCAAACATTCCGATGAGGTTGTCATAACGTCC
ACCAGCTGCAATTGAACCAACCTGTGTGGCCCCTTTGAAAATGGCTTCAA
ATATGACACCAGTGTAATAGTCAAGACCTCTTGCAAGACTCAAATCAAAA
ACCACTTTATCAATGCACTTTGACTTTTCTAGAGCTTGAAAAAAAATTTC
AAGGTCATCCAATGCAAGTTTAGCTGAACTGTTTTCTAAAA
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