CV884283

Overview
NameCV884283
Unique NameCV884283
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length852
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6199 contig Csv1_Contig6199:99..950. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884283 vs. ExPASy Swiss-Prot
Match: RS8_MAIZE (40S ribosomal protein S8 OS=Zea mays GN=RPS8 PE=2 SV=2)

HSP 1 Score: 316.235 bits (809), Expect = 1.435e-85
Identity = 167/217 (76.96%), Postives = 172/217 (79.26%), Query Frame = -3
Query:  197 DSMHXXXXXXXXXXXXXXXXKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXXXXXXXXXXKSNHVSRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQRKKGKSAGA 847
            DSMH                KYELGRQPANTKLSSNKTVRR+RVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYL HYGVDIGR                          KSNHV+RKLEKR++ RTLDPHIEEQFGSGRLLACI+SRPGQCGRADGYILEGKELEFYMKKLQRKKGKSA A
Sbjct:    6 DSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGVDIGR-KKKTPAAKKDNAEGQEVEAAAEETKKSNHVTRKLEKRKEGRTLDPHIEEQFGSGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKSAVA 221          
BLAST of CV884283 vs. ExPASy Swiss-Prot
Match: RS8_ORYSJ (40S ribosomal protein S8 OS=Oryza sativa subsp. japonica GN=RPS8 PE=2 SV=2)

HSP 1 Score: 313.153 bits (801), Expect = 1.214e-84
Identity = 166/217 (76.50%), Postives = 169/217 (77.88%), Query Frame = -3
Query:  197 DSMHXXXXXXXXXXXXXXXXKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXXXXXXXXXXKSNHVSRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQRKKGKSAGA 847
            DSMH                KYELGRQPANTKLSSNKTVRR+RVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYL HYGVDIGR                          KSNHV RKLEKRQ+ RTLD HIEEQFGSGRLLACI+SRPGQCGRADGYILEGKELEFYMKKLQRKKGK A A
Sbjct:    6 DSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGVDIGR--KKKAPAAKKDAEGQDAEATTEEAKKSNHVVRKLEKRQQGRTLDAHIEEQFGSGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGASA 220          
BLAST of CV884283 vs. ExPASy Swiss-Prot
Match: RS8_PRUAR (40S ribosomal protein S8 OS=Prunus armeniaca GN=RPS8 PE=2 SV=1)

HSP 1 Score: 306.22 bits (783), Expect = 1.485e-82
Identity = 162/218 (74.31%), Postives = 170/218 (77.98%), Query Frame = -3
Query:  194 DSMHXXXXXXXXXXXXXXXXKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXXXXXXXXXXKSNHVSRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQRKKGKSAGAA 847
            DSMH                KYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGN+SWGSEAVTRKTR+LDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV+IGR                          KSNHV+ KLEKRQ+ RTLD HIEEQFG G+LLACI+SRPGQCG+ADG ILEGKELEFYMKKLQRKKGK AGAA
Sbjct:    6 DSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNFSWGSEAVTRKTRLLDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVEIGR---KKKTAAAKKDTPEEGEATTEEAKKSNHVAIKLEKRQQGRTLDAHIEEQFGGGKLLACISSRPGQCGKADGDILEGKELEFYMKKLQRKKGKGAGAA 220          
BLAST of CV884283 vs. ExPASy Swiss-Prot
Match: RS82_ARATH (40S ribosomal protein S8-2 OS=Arabidopsis thaliana GN=RPS8B PE=2 SV=1)

HSP 1 Score: 303.908 bits (777), Expect = 7.368e-82
Identity = 162/218 (74.31%), Postives = 168/218 (77.06%), Query Frame = -3
Query:  194 DSMHXXXXXXXXXXXXXXXXKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXXXXXXXXXXKSNHVSRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQRKKGKSAGAA 847
            DS+H                KYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGN+SWGSEAVTRKTRILDV YNASNNELVRTQTLVKSAIVQVDAAPFKQ YLQHYGVDIGR                          KSNHV RKLE RQ+ R LD H+EEQF SGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQ+KKGK+AGAA
Sbjct:    6 DSIHKRRATGGKQKMWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNFSWGSEAVTRKTRILDVAYNASNNELVRTQTLVKSAIVQVDAAPFKQGYLQHYGVDIGR-------------KKKGEAVTTEEVKKSNHVQRKLEMRQEGRALDSHLEEQFSSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQKKKGKNAGAA 210          
BLAST of CV884283 vs. ExPASy Swiss-Prot
Match: RS81_ARATH (40S ribosomal protein S8-1 OS=Arabidopsis thaliana GN=RPS8A PE=2 SV=1)

HSP 1 Score: 290.812 bits (743), Expect = 6.455e-78
Identity = 150/216 (69.44%), Postives = 164/216 (75.93%), Query Frame = -3
Query:  203 DSMHXXXXXXXXXXXXXXXXKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGR-XXXXXXXXXXXXXXXXXXXXXXXXXXKSNHVSRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQRKKGKSA 847
            DS+H                KYE+GRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEA TRKTR+LDVVYNASNNELVRT+TLVKSAIVQVDAAPFKQWYL HYGV++GR                           KSNH+ RK+  RQ+ R+LD HIE+QF SGRLLACI+SRPGQCGRADGYILEGKELEFYMKK+Q+KKGK A
Sbjct:    6 DSIHKRRATGGKQKQWRKKRKYEMGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEATTRKTRVLDVVYNASNNELVRTKTLVKSAIVQVDAAPFKQWYLSHYGVELGRKKKSASSTKKDGEEGEEAAVAAPEEVKKSNHLLRKIASRQEGRSLDSHIEDQFASGRLLACISSRPGQCGRADGYILEGKELEFYMKKIQKKKGKGA 221          
BLAST of CV884283 vs. ExPASy Swiss-Prot
Match: RS8_ICTPU (40S ribosomal protein S8 OS=Ictalurus punctatus GN=rps8 PE=2 SV=3)

HSP 1 Score: 222.246 bits (565), Expect = 2.819e-57
Identity = 109/192 (56.77%), Postives = 138/192 (71.88%), Query Frame = -3
Query:  209 YELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXXXXXXXXXXKSNHVSRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQRKKGK 784
            YELGR P+NTKL   K +  +RVRGGN K+RALRLD GN+SWGSE  TRKTRI+DVVYNASNNELVRT+TLVK+ ++ VD+APF+QWY  HY + +GR                          +S  V +K +KR+K+  + P ++EQF  G+LLACI+SRPGQCGRADGY+LEGKELEFY++K++ KKGK
Sbjct:   27 YELGRPPSNTKLGP-KRIHTVRVRGGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCVILVDSAPFRQWYESHYALPLGR---------KKGAKLTPEEEDILNKKRSKKVQKKFDKRRKNSKISPLLDEQFQQGKLLACISSRPGQCGRADGYVLEGKELEFYLRKIKAKKGK 208          
BLAST of CV884283 vs. ExPASy Swiss-Prot
Match: RS8_DANRE (40S ribosomal protein S8 OS=Danio rerio GN=rps8 PE=2 SV=2)

HSP 1 Score: 212.616 bits (540), Expect = 2.234e-54
Identity = 107/192 (55.73%), Postives = 133/192 (69.27%), Query Frame = -3
Query:  209 YELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXXXXXXXXXXKSNHVSRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQRKKGK 784
            YELGR  ANTK+   + +  IRVRGGN K+RALRLD GN+SWGSE  TRKTRI+DVVYNASNNELVRT+TLVK+ +V VD+ P++QWY  HY + +GR                          +S  V +K   R+K   + P +EEQF  G+LLACI+SRPGQCGRADGY+LEGKELEFY++K++ KKGK
Sbjct:   27 YELGRPAANTKIGPRR-IHTIRVRGGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCVVLVDSTPYRQWYESHYALPLGR---------KKGAKLTPEEEEILNKKRSKKVQKKFTLRRKTAKISPLLEEQFLQGKLLACISSRPGQCGRADGYVLEGKELEFYLRKIKAKKGK 208          
BLAST of CV884283 vs. ExPASy Swiss-Prot
Match: RS8_RAT (40S ribosomal protein S8 OS=Rattus norvegicus GN=Rps8 PE=1 SV=2)

HSP 1 Score: 212.231 bits (539), Expect = 2.918e-54
Identity = 104/192 (54.17%), Postives = 135/192 (70.31%), Query Frame = -3
Query:  209 YELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXXXXXXXXXXKSNHVSRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQRKKGK 784
            YELGR  ANTK+   + +  +RVRGGN K+RALRLD GN+SWGSE  TRKTRI+DVVYNASNNELVRT+TLVK+ IV +D+ P++QWY  HY + +GR                          +S  + +K ++R+K+  +   +EEQF  G+LLACIASRPGQCGRADGY+LEGKELEFY++K++ +KGK
Sbjct:   27 YELGRPAANTKIGPRR-IHTVRVRGGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGR---------KKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK 208          
BLAST of CV884283 vs. ExPASy Swiss-Prot
Match: RS8_MOUSE (40S ribosomal protein S8 OS=Mus musculus GN=Rps8 PE=1 SV=2)

HSP 1 Score: 212.231 bits (539), Expect = 2.918e-54
Identity = 104/192 (54.17%), Postives = 135/192 (70.31%), Query Frame = -3
Query:  209 YELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXXXXXXXXXXKSNHVSRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQRKKGK 784
            YELGR  ANTK+   + +  +RVRGGN K+RALRLD GN+SWGSE  TRKTRI+DVVYNASNNELVRT+TLVK+ IV +D+ P++QWY  HY + +GR                          +S  + +K ++R+K+  +   +EEQF  G+LLACIASRPGQCGRADGY+LEGKELEFY++K++ +KGK
Sbjct:   27 YELGRPAANTKIGPRR-IHTVRVRGGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGR---------KKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK 208          
BLAST of CV884283 vs. ExPASy Swiss-Prot
Match: RS8_MACFA (40S ribosomal protein S8 OS=Macaca fascicularis GN=RPS8 PE=2 SV=3)

HSP 1 Score: 212.231 bits (539), Expect = 2.918e-54
Identity = 104/192 (54.17%), Postives = 135/192 (70.31%), Query Frame = -3
Query:  209 YELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXXXXXXXXXXKSNHVSRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQRKKGK 784
            YELGR  ANTK+   + +  +RVRGGN K+RALRLD GN+SWGSE  TRKTRI+DVVYNASNNELVRT+TLVK+ IV +D+ P++QWY  HY + +GR                          +S  + +K ++R+K+  +   +EEQF  G+LLACIASRPGQCGRADGY+LEGKELEFY++K++ +KGK
Sbjct:   27 YELGRPAANTKIGPRR-IHTVRVRGGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGR---------KKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK 208          
The following BLAST results are available for this feature:
BLAST of CV884283 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RS8_MAIZE1.435e-8576.9640S ribosomal protein S8 OS=Zea mays GN=RPS8 PE=2 ... [more]
RS8_ORYSJ1.214e-8476.5040S ribosomal protein S8 OS=Oryza sativa subsp. ja... [more]
RS8_PRUAR1.485e-8274.3140S ribosomal protein S8 OS=Prunus armeniaca GN=RP... [more]
RS82_ARATH7.368e-8274.3140S ribosomal protein S8-2 OS=Arabidopsis thaliana... [more]
RS81_ARATH6.455e-7869.4440S ribosomal protein S8-1 OS=Arabidopsis thaliana... [more]
RS8_ICTPU2.819e-5756.7740S ribosomal protein S8 OS=Ictalurus punctatus GN... [more]
RS8_DANRE2.234e-5455.7340S ribosomal protein S8 OS=Danio rerio GN=rps8 PE... [more]
RS8_RAT2.918e-5454.1740S ribosomal protein S8 OS=Rattus norvegicus GN=R... [more]
RS8_MOUSE2.918e-5454.1740S ribosomal protein S8 OS=Mus musculus GN=Rps8 P... [more]
RS8_MACFA2.918e-5454.1740S ribosomal protein S8 OS=Macaca fascicularis GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_002D07_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T7_D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884283 ID=CV884283; Name=CV884283; organism=Citrus sinensis; type=EST; length=852bp
TTTTTTAAGCGGAAGAATTCTAACACAGGAACTGGTAATATTCAAAAACA
AAATATAACAATAACACAAGTGAGAAATACAAGTTCGACTGCTGATATCA
TCTCGACTCTCGAAGTTTTAACTTAAGACTAAAAACAAGAACACAAGACA
AAACTAGAAATTCCAGTACGGAGTTTCAATAAACAAAAATTTAAGCAGCA
CCAGCACTCTTGCCCTTCTTCCTCTGTAACTTCTTCATGTAGAATTCCAG
TTCTTTACCCTCCAAGATGTATCCATCAGCACGTCCACACTGGCCAGGCC
GTGATGCGATACAAGCTAACAAACGACCACTACCAAACTGCTCCTCAATA
TGTGGGTCAAGTGTGCGATCTTTTTGACGCTTCTCAAGCTTTCTCGAGAC
ATGGTTGCTCTTCTTTGCCTCCTCAGTGGCGGGAGCCTCTCCTTCCTCTC
CTTCTTTCTTGGTTGTGGCAGCAGCTGCAGCCTTCTTCTTGCGACCAATG
TCAACACCATAATGCTGGAGATACCACTGCTTGAATGGTGCTGCATCAAC
CTGAACAATGGCACTCTTCACCAAAGTTTGAGTACGGACCAGCTCATTAT
TGGAGGCATTGTATACCACATCCAGAATTCTGGTCTTACGAGTCACTGCT
TCACTTCCCCAGGAGTAGTTTCCTGTGTCAAGCCTCAAAGCACGCCATTT
CACATTACCTCCACGAACCCTAATCCTCCTCACTGTCTTGTTGCTTGATA
GCTTAGTATTTGCAGGTTGCCTTCCAAGCTCATACTTTCTCTTCTTCCTC
CAAGCCTTCTTCTTGCCCCCAGTAGCACGCCTCTTGTGCATGGAATCACC
CT
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